RLG00000010032

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000449
Physical Location & Seq
Reverse (-)
61899407 .. 61900762
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010032

Sequence Viewer

Length: 1356 bp
ATGTCATCGGCAGAAACGGTAGCAAATATCGAAGAACTCCTAACAAATATCCTTGTGTCGGTGCCACCTCATTCTGTTGCCCGTTTCAAGTGCGTCTCCAAACATTGGCTCTCTCTTATCTCCAACATCCAAAATCCCAAGATTTCTGCTTTCTTCTCCAGCAAGACCAAAGAAGAGTCCTTCAAGTTCATTCCTCTTCGTAAGCACGAAAGCCCATCTGTGAATCCCTTTAAAAGCCTTAATAATTCCGTCCCTGATGGGTCTAAGTTGAAGATTATTCAGTCCTGCAATGGCCTCTTTCTCTGCCTTTGCAAGTCGACGAAAGAAAGAAGACATGATCTCGTATACGTTTTCAATCCCACAACCAACCAATTCCGGGCTGTTTCTTCTCCAAGGTTTGGGGAAGACATGGACGAATTTGCTTTTGTACGTTACGAATTTGGTTTTGTACGTTATGCTTTGGCTTTTGATCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCGTGACTAACTTCAATGATCATTATGATGGGGGGCACCACGAGATAGACATATATTCATCAGAGACTGGAAAGTGGAAGCATCTCGATACTCCTTTCTTCCCCAGCCCCTCTGACGAGGGCGCAAACCATGATTGCAAGGAGATGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCACCGTATACTGCAATGGCGCAGTTCATTGGATAAGAGGCAGTCGTGAAGCAAGATTGCCATTCTGCACATTTGGGGATGGTAGGAATGAGTTCATAAGAAACGAAAGTGATGTGCTGCACTACTTTGACGTAGGCGAAGAACGTTTGCTGCTAGCCTCCGCTACCCCTCCTGTCCCCTTGGTTGTCAAAAAAATTCCATTAATTTCCTCCCCTAGCCCTCATTATTCCTTCAAGTCTCCCTCTGAGTATCCCAGATTGGCTCGTAGATATTTTGGGGAGTGCTGTGGCCGTTTGTACTTGATTGAGACTTACCAGCATTGTAGCACTGAATTTGAGGTCATGGAGATGGAGAAAGACTACTCTGGCTGGTTTGTCAAGTATAATGTTGATCTGAGCCCAGTATTCACAGCTCTTCCTAGACAGGATTGGAATGCTTTTGTTATTTTGTGCCTTTCTCAGAAGGAGGAAACCTCCCGAGAAAGGCATGATGAGGTTGAGGATTCTTCAACTGTTTTGTTGTTGCATATTCCTGGTAAGGTCATATCTTATAATCTTAGGAATAAGACATTCAAGACATCCGTTGAGTTAGCCAACAAGGAACTTTTTCTAGGTTTTGAAAATCGTAGGGAAGACGATGTTAACTATCCTTACGTGAAGTCTTCAGCTTGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

452

Amino Acids

51.88

Weight (kDa)

6.79

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 57 - 207 4.4e-07 F-box associated beta propeller domain
FBA_1 PF07734 63 - 275 2.6e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1230
AccB1I GGYRCC 3 cut(s) 61, 537, 680
AccB7I CCANNNNNTGG 2 cut(s) 105, 398
AccI GTMKAC 3 cut(s) 317, 345, 687
AciI CCGC 1 cut(s) 840
AclI AACGTT 1 cut(s) 823
AclWI GGATC 1 cut(s) 464
AcoI YGGCCR 2 cut(s) 648, 967
AcsI RAATTY 4 cut(s) 416, 437, 873, 1010
AcuI CTGAAG 1 cut(s) 1326
AfaI GTAC 3 cut(s) 429, 450, 977
AfiI CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1161
AgsI TTSAA 9 cut(s) 88, 184, 271, 355, 517, 913, 1188, 1252, 1298
AjnI CCWGG 1 cut(s) 1210
AluBI AGCT 2 cut(s) 1091, 1346
AluI AGCT 2 cut(s) 1091, 1346
Alw26I GTCTC 4 cut(s) 100, 560, 921, 980
AlwI GGATC 1 cut(s) 464
AlwNI CAGNNNCTG 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 1155
AoxI GGCC 3 cut(s) 292, 648, 967
ApeKI GCWGC 2 cut(s) 796, 829
ApoI RAATTY 4 cut(s) 416, 437, 873, 1010
AseI ATTAAT 1 cut(s) 881
Asp700I GAANNNNTTC 2 cut(s) 770, 1284
AspLEI GCGC 2 cut(s) 626, 701
AsuC2I CCSGG 1 cut(s) 377
AsuNHI GCTAGC 1 cut(s) 832
AvaI CYCGRG 1 cut(s) 1155
BaeGI GKGCMC 1 cut(s) 540
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 3 cut(s) 61, 537, 680
BanII GRGCYC 1 cut(s) 1079
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 4 cut(s) 337, 411, 1317, 1332
BbvI GCAGC 2 cut(s) 783, 816
BccI CCATC 6 cut(s) 223, 251, 524, 640, 752, 1021
BceAI ACGGC 1 cut(s) 954
BciT130I CCWGG 1 cut(s) 1212
BciVI GTATCC 1 cut(s) 939
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 4 cut(s) 100, 560, 921, 980
BfaI CTAG 4 cut(s) 833, 894, 1098, 1289
BfmI CTRYAG 1 cut(s) 664
BfuI GTATCC 1 cut(s) 939
BisI GCNGC 2 cut(s) 797, 830
BlsI GCNGC 2 cut(s) 798, 831
Bme1390I CCNGG 2 cut(s) 377, 1212
BmeT110I CYCGRG 1 cut(s) 1155
BmiI GGNNCC 3 cut(s) 63, 539, 682
BmrFI CCNGG 2 cut(s) 377, 1212
BmrI ACTGGG 1 cut(s) 1073
BmsI GCATC 1 cut(s) 592
BmtI GCTAGC 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 1073
BpiI GAAGAC 4 cut(s) 337, 411, 1317, 1332
BplI GAGNNNNNCTC 2 cut(s) 1136, 1168
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 1333
BsaJI CCNNGG 2 cut(s) 392, 858
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1161
Bse1I ACTGG 2 cut(s) 574, 1079
Bse3DI GCAATG 2 cut(s) 295, 700
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 2 cut(s) 392, 858
BseGI GGATG 3 cut(s) 126, 763, 1256
BseLI CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1161
BseMI GCAATG 2 cut(s) 295, 700
BseMII CTCAG 3 cut(s) 915, 1064, 1151
BseNI ACTGG 2 cut(s) 574, 1079
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 2 cut(s) 783, 816
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 2 cut(s) 730, 782
BshFI GGCC 3 cut(s) 294, 650, 969
BshNI GGYRCC 3 cut(s) 61, 537, 680
BsiHKCI CYCGRG 1 cut(s) 1155
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 2 cut(s) 236, 839
BslI CCNNNNNNNGG 5 cut(s) 58, 105, 376, 398, 1161
BsmAI GTCTC 4 cut(s) 100, 560, 921, 980
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 236, 839
BsmI GAATGC 1 cut(s) 1117
BsnI GGCC 3 cut(s) 294, 650, 969
BsoBI CYCGRG 1 cut(s) 1155
Bsp1286I GDGCHC 2 cut(s) 540, 1079
Bsp143I GATC 4 cut(s) 337, 469, 520, 1069
BspACI CCGC 1 cut(s) 840
BspANI GGCC 3 cut(s) 294, 650, 969
BspCNI CTCAG 3 cut(s) 916, 1065, 1150
BspLI GGNNCC 3 cut(s) 63, 539, 682
BspOI GCTAGC 1 cut(s) 836
BspPI GGATC 1 cut(s) 464
BspQI GCTCTTC 1 cut(s) 1098
BspT107I GGYRCC 3 cut(s) 61, 537, 680
BsrDI GCAATG 2 cut(s) 295, 700
BsrI ACTGG 2 cut(s) 574, 1079
BssECI CCNNGG 2 cut(s) 392, 858
BssMI GATC 4 cut(s) 337, 469, 520, 1069
BssNAI GTATAC 2 cut(s) 346, 688
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 2 cut(s) 392, 858
Bst1107I GTATAC 2 cut(s) 346, 688
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 3 cut(s) 19, 685, 1192
Bst6I CTCTTC 3 cut(s) 168, 201, 1098
BstBAI YACGTR 1 cut(s) 1333
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 5 cut(s) 264, 924, 1073, 1137, 1235
BstF5I GGATG 3 cut(s) 126, 763, 1256
BstHHI GCGC 2 cut(s) 626, 701
BstKTI GATC 4 cut(s) 340, 472, 523, 1072
BstMAI GTCTC 4 cut(s) 100, 560, 921, 980
BstMBI GATC 4 cut(s) 337, 469, 520, 1069
BstMWI GCNNNNNNNGC 1 cut(s) 678
BstNI CCWGG 1 cut(s) 1212
BstSCI CCNGG 2 cut(s) 375, 1210
BstSFI CTRYAG 1 cut(s) 664
BstSLI GKGCMC 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 783, 816
BstV2I GAAGAC 4 cut(s) 337, 411, 1317, 1332
BstZ17I GTATAC 2 cut(s) 346, 688
BsuI GTATCC 1 cut(s) 939
BsuRI GGCC 3 cut(s) 294, 650, 969
BtsCI GGATG 3 cut(s) 126, 763, 1256
BtsIMutI CAGTG 1 cut(s) 1005
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 569
CfoI GCGC 2 cut(s) 626, 701
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 428, 449, 976
CviAII CATG 6 cut(s) 335, 409, 632, 652, 1021, 1166
CviQI GTAC 3 cut(s) 428, 449, 976
DdeI CTNAG 5 cut(s) 264, 924, 1073, 1137, 1235
DpnI GATC 4 cut(s) 339, 471, 522, 1071
DpnII GATC 4 cut(s) 337, 469, 520, 1069
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 648, 967
Eam1104I CTCTTC 3 cut(s) 168, 201, 1098
EarI CTCTTC 3 cut(s) 168, 201, 1098
Eco130I CCWWGG 2 cut(s) 392, 858
Eco24I GRGCYC 1 cut(s) 1079
Eco57I CTGAAG 1 cut(s) 1326
Eco88I CYCGRG 1 cut(s) 1155
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 392, 858
EcoT38I GRGCYC 1 cut(s) 1079
ErhI CCWWGG 2 cut(s) 392, 858
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 6 cut(s) 338, 412, 635, 655, 1024, 1169
FaqI GGGAC 2 cut(s) 236, 839
FatI CATG 6 cut(s) 334, 408, 631, 651, 1020, 1165
FbaI TGATCA 1 cut(s) 520
FblI GTMKAC 3 cut(s) 317, 345, 687
Fnu4HI GCNGC 2 cut(s) 797, 830
FokI GGATG 3 cut(s) 113, 770, 1243
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 2 cut(s) 797, 830
FspBI CTAG 4 cut(s) 833, 894, 1098, 1289
GlaI GCGC 2 cut(s) 625, 700
GluI GCNGC 2 cut(s) 797, 830
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 294, 650, 969
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 82
HhaI GCGC 2 cut(s) 626, 701
Hin1II CATG 6 cut(s) 338, 412, 635, 655, 1024, 1169
Hin6I GCGC 2 cut(s) 624, 699
HinP1I GCGC 2 cut(s) 624, 699
HincII GTYRAC 2 cut(s) 318, 1321
HindII GTYRAC 2 cut(s) 318, 1321
HinfI GANTC 3 cut(s) 176, 223, 1181
HpaI GTTAAC 1 cut(s) 1321
HpaII CCGG 1 cut(s) 376
Hpy166II GTNNAC 4 cut(s) 318, 346, 688, 1321
Hpy188I TCNGA 5 cut(s) 565, 616, 925, 1074, 1140
Hpy188III TCNNGA 4 cut(s) 587, 725, 1155, 1252
Hpy8I GTNNAC 4 cut(s) 318, 346, 688, 1321
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 4 cut(s) 190, 483, 919, 1135
HpyCH4III ACNGT 3 cut(s) 19, 685, 1192
HpyCH4IV ACGT 6 cut(s) 348, 430, 451, 810, 823, 1332
HpyCH4V TGCA 8 cut(s) 288, 312, 639, 655, 693, 747, 799, 1204
HpyF10VI GCNNNNNNNGC 1 cut(s) 678
HpyF3I CTNAG 5 cut(s) 264, 924, 1073, 1137, 1235
HpySE526I ACGT 6 cut(s) 348, 430, 451, 810, 823, 1332
Hsp92II CATG 6 cut(s) 338, 412, 635, 655, 1024, 1169
HspAI GCGC 2 cut(s) 624, 699
Ksp22I TGATCA 1 cut(s) 520
KspAI GTTAAC 1 cut(s) 1321
Kzo9I GATC 4 cut(s) 337, 469, 520, 1069
LguI GCTCTTC 1 cut(s) 1098
LmnI GCTCC 1 cut(s) 669
Lsp1109I GCAGC 2 cut(s) 783, 816
LweI GCATC 1 cut(s) 592
MaeI CTAG 4 cut(s) 833, 894, 1098, 1289
MaeII ACGT 6 cut(s) 348, 430, 451, 810, 823, 1332
MaeIII GTNAC 2 cut(s) 431, 505
MalI GATC 4 cut(s) 339, 471, 522, 1071
MboI GATC 4 cut(s) 337, 469, 520, 1069
MhlI GDGCHC 2 cut(s) 540, 1079
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 7 cut(s) 244, 371, 416, 437, 873, 882, 1010
MluNI TGGCCA 1 cut(s) 650
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 650
MroXI GAANNNNTTC 2 cut(s) 770, 1284
MscI TGGCCA 1 cut(s) 650
MseI TTAA 4 cut(s) 231, 240, 881, 1320
MslI CAYNNNNRTG 2 cut(s) 528, 1025
Msp20I TGGCCA 1 cut(s) 650
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 377, 1212
Mva1269I GAATGC 1 cut(s) 1117
MvaI CCWGG 1 cut(s) 1212
MwoI GCNNNNNNNGC 1 cut(s) 678
NciI CCSGG 1 cut(s) 377
NdeII GATC 4 cut(s) 337, 469, 520, 1069
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 6 cut(s) 338, 412, 635, 655, 1024, 1169
NlaIV GGNNCC 3 cut(s) 63, 539, 682
NmuCI GTSAC 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 1098
PctI GAATGC 1 cut(s) 1117
PdmI GAANNNNTTC 2 cut(s) 770, 1284
PfeI GAWTC 2 cut(s) 223, 1181
PflMI CCANNNNNTGG 2 cut(s) 105, 398
PkrI GCNGC 2 cut(s) 798, 831
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 1333
PshBI ATTAAT 1 cut(s) 881
PsiI TTATAA 1 cut(s) 1230
Psp1406I AACGTT 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 1210
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 3 cut(s) 63, 539, 682
PstNI CAGNNNCTG 1 cut(s) 569
RsaI GTAC 3 cut(s) 429, 450, 977
RsaNI GTAC 3 cut(s) 428, 449, 976
RseI CAYNNNNRTG 2 cut(s) 528, 1025
SalI GTCGAC 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 1098
SaqAI TTAA 4 cut(s) 231, 240, 881, 1320
SatI GCNGC 2 cut(s) 797, 830
Sau3AI GATC 4 cut(s) 337, 469, 520, 1069
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 377, 1212
SduI GDGCHC 2 cut(s) 540, 1079
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 1 cut(s) 664
SmiMI CAYNNNNRTG 2 cut(s) 528, 1025
Sse9I AATT 7 cut(s) 244, 371, 416, 437, 873, 882, 1010
SsiI CCGC 1 cut(s) 840
SspMI CTAG 4 cut(s) 833, 894, 1098, 1289
StyD4I CCNGG 2 cut(s) 375, 1210
StyI CCWWGG 2 cut(s) 392, 858
TaaI ACNGT 3 cut(s) 19, 685, 1192
TaiI ACGT 6 cut(s) 351, 433, 454, 813, 826, 1335
TaqI TCGA 3 cut(s) 30, 317, 588
TasI AATT 7 cut(s) 244, 371, 416, 437, 873, 882, 1010
TatI WGTACW 1 cut(s) 975
TfiI GAWTC 2 cut(s) 223, 1181
Tru1I TTAA 4 cut(s) 231, 240, 881, 1320
Tru9I TTAA 4 cut(s) 231, 240, 881, 1320
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 796, 829
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 178, 549, 695, 763
TspGWI ACGGA 2 cut(s) 238, 1249
TspRI CASTG 1 cut(s) 1012
Van91I CCANNNNNTGG 2 cut(s) 105, 398
VspI ATTAAT 1 cut(s) 881
XapI RAATTY 4 cut(s) 416, 437, 873, 1010
XmiI GTMKAC 3 cut(s) 317, 345, 687
XmnI GAANNNNTTC 2 cut(s) 770, 1284
XspI CTAG 4 cut(s) 833, 894, 1098, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.