Rh4DG014500

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000449
Physical Location & Seq
Reverse (-)
2267522 .. 2269040
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG014500.1

Sequence Viewer

Length: 1035 bp
ATGGCGCAAAGAAACGAAAGGAGAATTCACTGCGATTCCTCATCAGCAGCAGAAACGGTGGCCAATATCGAAGAGCTTCTGTCTCAGATACTTGTATTGGTTCCAGCCTTATCTCTGATCCGTTTCAAGTGCGTCTCCAGGCACTGGCTCACTCTCATCTCCGACCCCGGATTTTTTCGCCGCCACTTACATCAAAAGTCGAAGATCATCGGCTTCTTTTCTAGCCAAACCGAAGACGAGTCCTTCAAGTCCATTGCTTTTAGTGACCGCGAAATCCCATCTGGGAATCCCTTCAAAACTATAAATGATTCCTTCGGTGATGGCTCCAGGTTGAAGATTATTCAATCCTGCAACGGCCTCTTCCTTTGCGTTCGCTACTCTAGGGATATTTCTCTTTTGCGTCAATCATATGGTGTCAAAGATCATCCCGCATATGTTGTGAATCCCACAACCAACAAATTCTTGGCTCTTTATTCTCCAAGCGTTAAGAAAAATAAAAAATGTTCTAGTTTTTTAGTACGTTATGCTCTGGCTTTTGACCCTTCCATATCACCTTTTTACAAGGTGGTCTGCGTGACTAACTACTCGTTTCGGGAGCAGTCCCACCACATAGACATCTATTCCTCTGAGACTCAAGAGTGGAAGGAGCTTCTCAGGGTTCCTTTCTTCCCCAGCTATCCCATGCACTTTAACCACAGGAGCACGGAAGGGGCAGTATACTGTAATGGCAAGATTCATTGGATAAGACGCCTAACCGACAGATTTGGCTATGACTCATGGTGGCACTTCCGCGATGGTAGATTCATAAGAGATGAAGGTGACGTGTTACACTACTTTGACATAGATGAACAAAGTTTGCGACTCGTCGCTGCTGCTACTCCTGTTCCTGTGGCTGTAAGAGCTGATAGGAATAAGACCTTCAAAACATCAGCGGAGCTGGCCGATAAGGAACTTTTTCTAGCTTTGGATAATGATCGATGCTTTCACATGGAGGCTGCTAACTATCCTTACATGGGGACTTTAGCTTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

344

Amino Acids

39.71

Weight (kDa)

8.8

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 69 - 242 5.8e-10 F-box associated beta propeller domain
FBA_1 PF07734 108 - 251 3.5e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 717
AccII CGCG 2 cut(s) 270, 792
AciI CCGC 5 cut(s) 181, 268, 429, 790, 932
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 2 cut(s) 60, 939
AcsI RAATTY 2 cut(s) 24, 458
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 2 cut(s) 144, 1013
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 6 cut(s) 127, 247, 295, 334, 344, 922
AjiI CACGTC 1 cut(s) 823
AjnI CCWGG 2 cut(s) 137, 326
AluBI AGCT 7 cut(s) 76, 649, 675, 902, 937, 962, 1025
AluI AGCT 7 cut(s) 76, 649, 675, 902, 937, 962, 1025
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 3 cut(s) 87, 139, 623
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 3 cut(s) 60, 355, 939
ApeKI GCWGC 4 cut(s) 47, 869, 872, 995
ApoI RAATTY 2 cut(s) 24, 458
Asp700I GAANNNNTTC 3 cut(s) 75, 290, 954
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 329, 543, 830
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 704
BbvI GCAGC 4 cut(s) 59, 856, 859, 982
BccI CCATC 3 cut(s) 286, 314, 788
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 2 cut(s) 139, 328
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 87, 139, 623
BfaI CTAG 4 cut(s) 222, 381, 507, 959
BisI GCNGC 5 cut(s) 48, 181, 870, 873, 996
BlsI GCNGC 5 cut(s) 49, 182, 871, 874, 997
Bme1390I CCNGG 3 cut(s) 139, 168, 328
BmgBI CACGTC 1 cut(s) 823
BmiI GGNNCC 3 cut(s) 102, 325, 660
BmrFI CCNGG 3 cut(s) 139, 168, 328
BmsI GCATC 1 cut(s) 968
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 121, 310
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 976
BsaBI GATNNNNATC 1 cut(s) 972
BsaHI GRCGYC 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 1013
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 972
BseBI CCWGG 2 cut(s) 139, 328
BseCI ATCGAT 1 cut(s) 976
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 972
BseLI CCNNNNNNNGG 2 cut(s) 144, 1013
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 98, 618, 667
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 4 cut(s) 59, 856, 859, 982
BseYI CCCAGC 1 cut(s) 671
Bsh1236I CGCG 2 cut(s) 270, 792
BshFI GGCC 3 cut(s) 62, 357, 941
BshVI ATCGAT 1 cut(s) 976
BsiHKAI GWGCWC 1 cut(s) 704
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 586, 1030
BslI CCNNNNNNNGG 2 cut(s) 144, 1013
BsmAI GTCTC 3 cut(s) 87, 139, 623
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 586, 1030
BsnI GGCC 3 cut(s) 62, 357, 941
Bsp1286I GDGCHC 1 cut(s) 704
Bsp143I GATC 4 cut(s) 117, 204, 421, 973
BspACI CCGC 5 cut(s) 181, 268, 429, 790, 932
BspANI GGCC 3 cut(s) 62, 357, 941
BspCNI CTCAG 3 cut(s) 97, 619, 666
BspDI ATCGAT 1 cut(s) 976
BspFNI CGCG 2 cut(s) 270, 792
BspLI GGNNCC 3 cut(s) 102, 325, 660
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 4 cut(s) 117, 204, 421, 973
BssNAI GTATAC 1 cut(s) 718
BssNI GRCGYC 1 cut(s) 748
Bst1107I GTATAC 1 cut(s) 718
Bst2UI CCWGG 2 cut(s) 139, 328
Bst4CI ACNGT 2 cut(s) 58, 722
Bst6I CTCTTC 2 cut(s) 66, 365
BstACI GRCGYC 1 cut(s) 748
BstC8I GCNNGC 1 cut(s) 939
BstDEI CTNAG 3 cut(s) 84, 627, 653
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 2 cut(s) 270, 792
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 120, 207, 424, 976
BstMAI GTCTC 3 cut(s) 87, 139, 623
BstMBI GATC 4 cut(s) 117, 204, 421, 973
BstMWI GCNNNNNNNGC 2 cut(s) 899, 938
BstNI CCWGG 2 cut(s) 139, 328
BstSCI CCNGG 3 cut(s) 137, 166, 326
BstUI CGCG 2 cut(s) 270, 792
BstV1I GCAGC 4 cut(s) 59, 856, 859, 982
BstV2I GAAGAC 1 cut(s) 240
BstZ17I GTATAC 1 cut(s) 718
Bsu15I ATCGAT 1 cut(s) 976
BsuRI GGCC 3 cut(s) 62, 357, 941
BsuTUI ATCGAT 1 cut(s) 976
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 823
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 2 cut(s) 28, 142
Cac8I GCNNGC 1 cut(s) 939
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 976
CseI GACGC 3 cut(s) 121, 389, 756
Csp6I GTAC 1 cut(s) 518
CviAII CATG 4 cut(s) 682, 777, 988, 1012
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 84, 627, 653
DpnI GATC 4 cut(s) 119, 206, 423, 975
DpnII GATC 4 cut(s) 117, 204, 421, 973
EaeI YGGCCR 2 cut(s) 60, 939
Eam1104I CTCTTC 2 cut(s) 66, 365
EarI CTCTTC 2 cut(s) 66, 365
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 137, 326
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 685, 780, 991, 1015
FaqI GGGAC 2 cut(s) 586, 1030
FatI CATG 4 cut(s) 681, 776, 987, 1011
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 2 cut(s) 409, 433
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 5 cut(s) 48, 181, 870, 873, 996
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 5 cut(s) 48, 181, 870, 873, 996
FspBI CTAG 4 cut(s) 222, 381, 507, 959
GlaI GCGC 1 cut(s) 6
GluI GCNGC 5 cut(s) 48, 181, 870, 873, 996
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 2 cut(s) 121, 310
HaeIII GGCC 3 cut(s) 62, 357, 941
HapII CCGG 1 cut(s) 168
HgaI GACGC 3 cut(s) 121, 389, 756
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 4 cut(s) 685, 780, 991, 1015
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 329, 543, 830
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 4 cut(s) 87, 117, 163, 628
Hpy188III TCNNGA 2 cut(s) 593, 635
Hpy8I GTNNAC 1 cut(s) 718
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 8 cut(s) 253, 301, 322, 552, 637, 701, 809, 928
HpyCH4III ACNGT 2 cut(s) 58, 722
HpyCH4IV ACGT 2 cut(s) 520, 822
HpyCH4V TGCA 2 cut(s) 351, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 899, 938
HpyF3I CTNAG 3 cut(s) 84, 627, 653
HpySE526I ACGT 2 cut(s) 520, 822
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 4 cut(s) 685, 780, 991, 1015
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 4 cut(s) 117, 204, 421, 973
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 5 cut(s) 329, 595, 646, 699, 934
Lsp1109I GCAGC 4 cut(s) 59, 856, 859, 982
LweI GCATC 1 cut(s) 968
MaeI CTAG 4 cut(s) 222, 381, 507, 959
MaeII ACGT 2 cut(s) 520, 822
MaeIII GTNAC 4 cut(s) 263, 574, 818, 825
MalI GATC 4 cut(s) 119, 206, 423, 975
MboI GATC 4 cut(s) 117, 204, 421, 973
MboII GAAGA 6 cut(s) 83, 214, 245, 346, 352, 658
MhlI GDGCHC 1 cut(s) 704
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 24, 458
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 4 cut(s) 248, 625, 767, 855
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 49, 368, 634, 985
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 3 cut(s) 75, 290, 954
MscI TGGCCA 1 cut(s) 62
MseI TTAA 2 cut(s) 486, 690
Msp20I TGGCCA 1 cut(s) 62
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 3 cut(s) 139, 168, 328
MvaI CCWGG 2 cut(s) 139, 328
MvnI CGCG 2 cut(s) 270, 792
MwoI GCNNNNNNNGC 2 cut(s) 899, 938
NciI CCSGG 1 cut(s) 168
NdeI CATATG 2 cut(s) 409, 433
NdeII GATC 4 cut(s) 117, 204, 421, 973
NlaIII CATG 4 cut(s) 685, 780, 991, 1015
NlaIV GGNNCC 3 cut(s) 102, 325, 660
NmuCI GTSAC 3 cut(s) 263, 574, 818
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 3 cut(s) 75, 290, 954
PfeI GAWTC 6 cut(s) 35, 286, 308, 442, 733, 801
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 5 cut(s) 49, 182, 871, 874, 997
PleI GAGTC 4 cut(s) 247, 625, 767, 855
PpsI GAGTC 4 cut(s) 247, 625, 767, 855
Psp6I CCWGG 2 cut(s) 137, 326
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 137, 326
PspN4I GGNNCC 3 cut(s) 102, 325, 660
PstNI CAGNNNCTG 1 cut(s) 144
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 486, 690
SatI GCNGC 5 cut(s) 48, 181, 870, 873, 996
Sau3AI GATC 4 cut(s) 117, 204, 421, 973
SchI GAGTC 4 cut(s) 248, 625, 767, 855
ScrFI CCNGG 3 cut(s) 139, 168, 328
SduI GDGCHC 1 cut(s) 704
SfaNI GCATC 1 cut(s) 968
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 2 cut(s) 24, 458
SsiI CCGC 5 cut(s) 181, 268, 429, 790, 932
SspMI CTAG 4 cut(s) 222, 381, 507, 959
StyD4I CCNGG 3 cut(s) 137, 166, 326
TaaI ACNGT 2 cut(s) 58, 722
TaiI ACGT 2 cut(s) 523, 825
TaqI TCGA 3 cut(s) 69, 200, 976
TasI AATT 2 cut(s) 24, 458
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 6 cut(s) 35, 286, 308, 442, 733, 801
Tru1I TTAA 2 cut(s) 486, 690
Tru9I TTAA 2 cut(s) 486, 690
TscAI CASTG 2 cut(s) 35, 149
TseFI GTSAC 3 cut(s) 263, 574, 818
TseI GCWGC 4 cut(s) 47, 869, 872, 995
Tsp45I GTSAC 3 cut(s) 263, 574, 818
TspDTI ATGAA 4 cut(s) 725, 793, 828, 861
TspGWI ACGGA 2 cut(s) 110, 719
TspRI CASTG 2 cut(s) 35, 149
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 24, 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 3 cut(s) 75, 290, 954
XspI CTAG 4 cut(s) 222, 381, 507, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.