Rmu_sc0002509.1_g000011

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002509.1
OG0000449
Physical Location & Seq
Forward (+)
43502 .. 44421
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002509.1_g000011.1.cds

Sequence Viewer

Length: 837 bp
atgggttcctgctctatctctgatccgtttcaagtgcgtctccaagcactggctcgctctcatctctccgaccccgagttccgtcgccgtcacaccctccgaaaccctaactccaaaatctcagctttcttctctccccaaaccaatgaagaaaccttcaagtccatccgtcttggtagccatgaaatcccacctaggtgcaatcccttcaaaacgctaaacaattccgtcgctgatgaatcaaagttcaggattcttcagtcctgcaatggcctctttctctgccatactcctatatttggagaacatcatcccgtatatgttgtcaatcccacgaccaacgaattccgggcactttcttttccaattgtcaaagaagacggggacagacatacttttgtacgctatgctttggcttttgatccttccacatcgcctcattacaaggtgcgtctcgatactccgttcttccccagcccctccgacgaggacaggcaccatgatttgatgaacaaggccatgcactttaactacaggagcagagaaggcgccatctactgcaacggtgcagttcattggataagagacaaaggggaagcaagcctgtccttctgcgcattcccagatgataggtttgaattcacaagagaggaaactgatgtgctgcactacttcgacataggccaagagcgtttgctggtcgctccagctacccctccagtccccttggttgtcaagaacattccactgaaggttagtggttttggctgcaagatgttaaagttaatgcttagtttatttaaccttatgctagttagtttctttaactctagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

278

Amino Acids

31.83

Weight (kDa)

8.16

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 616
AccB1I GGYRCC 2 cut(s) 495, 548
AccB7I CCANNNNNTGG 1 cut(s) 49
AclWI GGATC 2 cut(s) 17, 416
AcsI RAATTY 2 cut(s) 344, 638
AcuI CTGAAG 2 cut(s) 242, 770
AcyI GRCGYC 1 cut(s) 549
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 49, 299
AgsI TTSAA 4 cut(s) 32, 160, 211, 638
AleI CACNNNNGTG 1 cut(s) 196
AluBI AGCT 2 cut(s) 125, 710
AluI AGCT 2 cut(s) 125, 710
Alw26I GTCTC 3 cut(s) 44, 458, 579
AlwI GGATC 2 cut(s) 17, 416
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 3 cut(s) 271, 516, 682
ApeKI GCWGC 2 cut(s) 664, 768
ApoI RAATTY 2 cut(s) 344, 638
AspA2I CCTAGG 1 cut(s) 194
AspLEI GCGC 2 cut(s) 551, 617
AsuC2I CCSGG 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 355
BanI GGYRCC 2 cut(s) 495, 548
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 651, 755
BccI CCATC 2 cut(s) 173, 560
BceAI ACGGC 1 cut(s) 72
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 3 cut(s) 44, 458, 579
BfaI CTAG 3 cut(s) 195, 812, 831
BfmI CTRYAG 1 cut(s) 532
BfoI RGCGCY 1 cut(s) 552
BisI GCNGC 2 cut(s) 665, 769
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 2 cut(s) 666, 770
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 3 cut(s) 7, 497, 550
BmrFI CCNGG 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 2 cut(s) 690, 702
BpuMI CCSGG 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 194, 726
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 299
Bse1I ACTGG 2 cut(s) 54, 719
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 194, 726
BseGI GGATG 2 cut(s) 165, 310
BseLI CCNNNNNNNGG 2 cut(s) 49, 299
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 54, 719
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 2 cut(s) 651, 755
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 2 cut(s) 588, 650
BshFI GGCC 3 cut(s) 273, 518, 684
BshNI GGYRCC 2 cut(s) 495, 548
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 349
BslFI GGGAC 2 cut(s) 398, 707
BslI CCNNNNNNNGG 2 cut(s) 49, 299
BsmAI GTCTC 3 cut(s) 44, 458, 579
BsmBI CGTCTC 2 cut(s) 44, 458
BsmFI GGGAC 2 cut(s) 398, 707
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 3 cut(s) 273, 518, 684
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 22, 421
BspANI GGCC 3 cut(s) 273, 518, 684
BspCNI CTCAG 1 cut(s) 134
BspLI GGNNCC 3 cut(s) 7, 497, 550
BspPI GGATC 2 cut(s) 17, 416
BspT107I GGYRCC 2 cut(s) 495, 548
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 2 cut(s) 54, 719
BssECI CCNNGG 2 cut(s) 194, 726
BssMI GATC 2 cut(s) 22, 421
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 2 cut(s) 194, 726
Bst4CI ACNGT 1 cut(s) 566
BstACI GRCGYC 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 55, 601
BstDEI CTNAG 2 cut(s) 121, 791
BstF5I GGATG 2 cut(s) 165, 310
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 2 cut(s) 551, 617
BstKTI GATC 2 cut(s) 25, 424
BstMAI GTCTC 3 cut(s) 44, 458, 579
BstMBI GATC 2 cut(s) 22, 421
BstMWI GCNNNNNNNGC 1 cut(s) 546
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 651, 755
BstV2I GAAGAC 1 cut(s) 384
BsuRI GGCC 3 cut(s) 273, 518, 684
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 165, 310
BtsIMutI CAGTG 2 cut(s) 47, 746
Cac8I GCNNGC 2 cut(s) 55, 601
CfoI GCGC 2 cut(s) 551, 617
CseI GACGC 2 cut(s) 26, 440
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 182, 500, 520
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 2 cut(s) 121, 791
DinI GGCGCC 1 cut(s) 550
DpnI GATC 2 cut(s) 24, 423
DpnII GATC 2 cut(s) 22, 421
Eco130I CCWWGG 2 cut(s) 194, 726
Eco57I CTGAAG 2 cut(s) 242, 770
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 2 cut(s) 344, 638
EcoT14I CCWWGG 2 cut(s) 194, 726
EgeI GGCGCC 1 cut(s) 550
EheI GGCGCC 1 cut(s) 550
ErhI CCWWGG 2 cut(s) 194, 726
Esp3I CGTCTC 2 cut(s) 44, 458
FaeI CATG 3 cut(s) 185, 503, 523
FaqI GGGAC 2 cut(s) 398, 707
FatI CATG 3 cut(s) 181, 499, 519
Fnu4HI GCNGC 2 cut(s) 665, 769
FokI GGATG 2 cut(s) 152, 297
Fsp4HI GCNGC 2 cut(s) 665, 769
FspBI CTAG 3 cut(s) 195, 812, 831
FspI TGCGCA 1 cut(s) 616
GlaI GCGC 2 cut(s) 550, 616
GluI GCNGC 2 cut(s) 665, 769
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 2 cut(s) 690, 702
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 3 cut(s) 273, 518, 684
HapII CCGG 1 cut(s) 349
HgaI GACGC 2 cut(s) 26, 440
HhaI GCGC 2 cut(s) 551, 617
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 3 cut(s) 185, 503, 523
Hin6I GCGC 2 cut(s) 549, 615
HinP1I GCGC 2 cut(s) 549, 615
HinfI GANTC 2 cut(s) 239, 253
HpaII CCGG 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 22, 70, 101, 484
Hpy188III TCNNGA 3 cut(s) 250, 455, 736
Hpy99I CGWCG 3 cut(s) 87, 233, 488
HpyAV CCTTC 6 cut(s) 166, 217, 435, 539, 619, 745
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 7 cut(s) 201, 267, 523, 561, 569, 667, 771
HpyF10VI GCNNNNNNNGC 1 cut(s) 546
HpyF3I CTNAG 2 cut(s) 121, 791
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 3 cut(s) 185, 503, 523
HspAI GCGC 2 cut(s) 549, 615
KasI GGCGCC 1 cut(s) 548
Kzo9I GATC 2 cut(s) 22, 421
LmnI GCTCC 2 cut(s) 537, 709
Lsp1109I GCAGC 2 cut(s) 651, 755
MaeI CTAG 3 cut(s) 195, 812, 831
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 24, 423
MboI GATC 2 cut(s) 22, 421
MboII GAAGA 5 cut(s) 121, 161, 248, 389, 460
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 4 cut(s) 223, 344, 366, 638
Mly113I GGCGCC 1 cut(s) 549
MmeI TCCRAC 2 cut(s) 93, 507
MnlI CCTC 7 cut(s) 107, 284, 447, 481, 490, 643, 726
MseI TTAA 6 cut(s) 528, 779, 785, 801, 825, 835
MslI CAYNNNNRTG 1 cut(s) 196
MspI CCGG 1 cut(s) 349
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 617
MwoI GCNNNNNNNGC 1 cut(s) 546
NarI GGCGCC 1 cut(s) 549
NciI CCSGG 1 cut(s) 350
NdeII GATC 2 cut(s) 22, 421
NlaIII CATG 3 cut(s) 185, 503, 523
NlaIV GGNNCC 3 cut(s) 7, 497, 550
NmuCI GTSAC 1 cut(s) 89
NsbI TGCGCA 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 196
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 2 cut(s) 239, 253
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 2 cut(s) 666, 770
PluTI GGCGCC 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 3 cut(s) 7, 497, 550
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 196
SaqAI TTAA 6 cut(s) 528, 779, 785, 801, 825, 835
SatI GCNGC 2 cut(s) 665, 769
Sau3AI GATC 2 cut(s) 22, 421
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 355
SetI ASST 9 cut(s) 127, 158, 196, 200, 450, 635, 712, 756, 807
SfcI CTRYAG 1 cut(s) 532
SfoI GGCGCC 1 cut(s) 550
SmiMI CAYNNNNRTG 1 cut(s) 196
Sse9I AATT 4 cut(s) 223, 344, 366, 638
SspDI GGCGCC 1 cut(s) 548
SspMI CTAG 3 cut(s) 195, 812, 831
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 194, 726
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 2 cut(s) 456, 675
TasI AATT 4 cut(s) 223, 344, 366, 638
TfiI GAWTC 2 cut(s) 239, 253
Tru1I TTAA 6 cut(s) 528, 779, 785, 801, 825, 835
Tru9I TTAA 6 cut(s) 528, 779, 785, 801, 825, 835
TscAI CASTG 2 cut(s) 54, 753
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 664, 768
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 5 cut(s) 162, 198, 252, 524, 563
TspGWI ACGGA 5 cut(s) 15, 71, 158, 217, 453
TspRI CASTG 2 cut(s) 54, 753
Van91I CCANNNNNTGG 1 cut(s) 49
XapI RAATTY 2 cut(s) 344, 638
XmaJI CCTAGG 1 cut(s) 194
XspI CTAG 3 cut(s) 195, 812, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.