Rw4G001700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000449
Physical Location & Seq
Forward (+)
3188378 .. 3189731
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001700.1

Sequence Viewer

Length: 1125 bp
ATGTCATCGGCAGAAACGGTAGCAAATATCGAAGAACTCCTGACAAATATCCTTGTGTCGGTGCCACCTCATTCTGTTGCCCGTTTCAAGTGCGTCTCCAAACATTGGCCCTCTCTTATCTCCAACATCCAAAATCCCAAGATTTCTGCTTTCTTCTCCAGCAAGACCAAAGAAGAAAGGCATGATCTCGTATACGTTTTCAATCCCACAACCAACCAATTCCGGGCTGTTTCTTCTCCAAGGTTTGGGGAAGACATGGGCGAATTTGCTTTTGTACGTTACGAATTTGGTTTTGTACGTTATGCTTTGGCTTTTGATCCTTCCAAATCGCCTCATTACAAGGTGGTCTGCGTGACTAACTTCAATGATCATTATGATGGGGGGCACCACGAGATAGACATATATTCATCAGAGACTGGAAAGTGGAAGCATCTCGATACTCCTTTCTTCCCCAGCCCCTCTGACGAGGGCGCAAACTATGATTGCAAGGAGATGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCACCGTATACTGCAATGGCGCAGTTCATTGGATAAGAGGCAGTCGTGAAGCAAGATTGCCATTCTGCACATTTGGGGATGGTAGGAATGAGTTCATAAGAAACGAAAGTGATGTGCTGCACTACTTTGACGTAGGCGAAGAACGTTTGCTGCTAGCCTCCGCTACCCCTCCTGTCCCCTTGGTTGTCAAAAAAATTCCATTAATTTCCTCCCCTAGCCCTCATTATTCCTTTAAGTCTCCCTCTGAGTATCCCAGATTGGCTCGTAGATATTTTGGGGAGTGCTGTGGCCGTTTGTACTTGATTGAGACTTACCAGCATTGTAGCACTGAATTTGAGGTCATGGAGATGGAGAAAGACTACTCTGGCTGGTTTGTCAACTTTCCTAGACAGGATTGGAATGCTTTTGTTATCTTGTGCCTTTCTCAGGAGGAGGAAACCTCCCGAGAAAGGCATGATGAGGTCATATCTTATAATCTTAGGAATAAGACATTCAGGACATCCGTTGAGTTAGCCAACAAGGAACTTTTTCTAGGTTTTGAAAATCGTAGGGAAGACGATGTTAACTATCCTTACGTGAAGTCTTCAGCTTGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

374

Amino Acids

43.36

Weight (kDa)

5.99

Isoelectric Point (pI)

60.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 61 - 223 4.4e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccB1I GGYRCC 3 cut(s) 61, 384, 527
AccB7I CCANNNNNTGG 2 cut(s) 105, 245
AccI GTMKAC 2 cut(s) 192, 534
AciI CCGC 1 cut(s) 687
AclI AACGTT 1 cut(s) 670
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 2 cut(s) 495, 814
AcsI RAATTY 4 cut(s) 263, 284, 720, 857
AcuI CTGAAG 1 cut(s) 1095
AfaI GTAC 3 cut(s) 276, 297, 824
AfiI CCNNNNNNNGG 6 cut(s) 58, 105, 223, 245, 952, 975
AgsI TTSAA 4 cut(s) 88, 202, 364, 1067
AluBI AGCT 1 cut(s) 1115
AluI AGCT 1 cut(s) 1115
Alw26I GTCTC 4 cut(s) 100, 407, 768, 827
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 969
AoxI GGCC 3 cut(s) 107, 495, 814
ApeKI GCWGC 2 cut(s) 643, 676
ApoI RAATTY 4 cut(s) 263, 284, 720, 857
AseI ATTAAT 1 cut(s) 728
Asp700I GAANNNNTTC 2 cut(s) 617, 1053
AspLEI GCGC 2 cut(s) 473, 548
AspS9I GGNCC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 224
AsuNHI GCTAGC 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 969
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 3 cut(s) 61, 384, 527
BauI CACGAG 1 cut(s) 389
BbsI GAAGAC 3 cut(s) 258, 1086, 1101
BbvI GCAGC 2 cut(s) 630, 663
BccI CCATC 4 cut(s) 371, 487, 599, 868
BceAI ACGGC 1 cut(s) 801
BciVI GTATCC 1 cut(s) 786
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 4 cut(s) 100, 407, 768, 827
BfaI CTAG 4 cut(s) 680, 741, 912, 1058
BfmI CTRYAG 1 cut(s) 511
BfuI GTATCC 1 cut(s) 786
BisI GCNGC 2 cut(s) 644, 677
BlsI GCNGC 2 cut(s) 645, 678
Bme1390I CCNGG 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 969
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 3 cut(s) 63, 386, 529
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 439
BmtI GCTAGC 1 cut(s) 683
BpiI GAAGAC 3 cut(s) 258, 1086, 1101
BplI GAGNNNNNCTC 2 cut(s) 950, 982
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 1102
BsaJI CCNNGG 2 cut(s) 239, 705
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 105, 223, 245, 952, 975
Bse1I ACTGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 547
BseDI CCNNGG 2 cut(s) 239, 705
BseGI GGATG 3 cut(s) 126, 610, 1025
BseLI CCNNNNNNNGG 6 cut(s) 58, 105, 223, 245, 952, 975
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 762, 965
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 1 cut(s) 971
BseSI GKGCMC 1 cut(s) 387
BseXI GCAGC 2 cut(s) 630, 663
BseYI CCCAGC 1 cut(s) 452
BsgI GTGCAG 2 cut(s) 577, 629
BshFI GGCC 3 cut(s) 109, 497, 816
BshNI GGYRCC 3 cut(s) 61, 384, 527
BsiHKCI CYCGRG 1 cut(s) 969
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 6 cut(s) 58, 105, 223, 245, 952, 975
BsmAI GTCTC 4 cut(s) 100, 407, 768, 827
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 3 cut(s) 109, 497, 816
BsoBI CYCGRG 1 cut(s) 969
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 3 cut(s) 184, 316, 367
BspACI CCGC 1 cut(s) 687
BspANI GGCC 3 cut(s) 109, 497, 816
BspCNI CTCAG 2 cut(s) 763, 964
BspLI GGNNCC 3 cut(s) 63, 386, 529
BspOI GCTAGC 1 cut(s) 683
BspPI GGATC 1 cut(s) 311
BspT107I GGYRCC 3 cut(s) 61, 384, 527
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 2 cut(s) 239, 705
BssMI GATC 3 cut(s) 184, 316, 367
BssNAI GTATAC 2 cut(s) 193, 535
BssSI CACGAG 1 cut(s) 389
BssT1I CCWWGG 2 cut(s) 239, 705
Bst1107I GTATAC 2 cut(s) 193, 535
Bst2BI CACGAG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 19, 532
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 3 cut(s) 771, 951, 1004
BstENI CCTNNNNNAGG 1 cut(s) 950
BstF5I GGATG 3 cut(s) 126, 610, 1025
BstHHI GCGC 2 cut(s) 473, 548
BstKTI GATC 3 cut(s) 187, 319, 370
BstMAI GTCTC 4 cut(s) 100, 407, 768, 827
BstMBI GATC 3 cut(s) 184, 316, 367
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 511
BstSLI GKGCMC 1 cut(s) 387
BstV1I GCAGC 2 cut(s) 630, 663
BstV2I GAAGAC 3 cut(s) 258, 1086, 1101
BstZ17I GTATAC 2 cut(s) 193, 535
BsuI GTATCC 1 cut(s) 786
BsuRI GGCC 3 cut(s) 109, 497, 816
BtsCI GGATG 3 cut(s) 126, 610, 1025
BtsIMutI CAGTG 1 cut(s) 852
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 1 cut(s) 416
CfoI GCGC 2 cut(s) 473, 548
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 275, 296, 823
CviAII CATG 5 cut(s) 182, 256, 499, 868, 980
CviQI GTAC 3 cut(s) 275, 296, 823
DdeI CTNAG 3 cut(s) 771, 951, 1004
DpnI GATC 3 cut(s) 186, 318, 369
DpnII GATC 3 cut(s) 184, 316, 367
EaeI YGGCCR 2 cut(s) 495, 814
Eco130I CCWWGG 2 cut(s) 239, 705
Eco57I CTGAAG 1 cut(s) 1095
Eco88I CYCGRG 1 cut(s) 969
EcoNI CCTNNNNNAGG 1 cut(s) 950
EcoT14I CCWWGG 2 cut(s) 239, 705
ErhI CCWWGG 2 cut(s) 239, 705
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 5 cut(s) 185, 259, 502, 871, 983
FaqI GGGAC 1 cut(s) 686
FatI CATG 5 cut(s) 181, 255, 498, 867, 979
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 2 cut(s) 192, 534
Fnu4HI GCNGC 2 cut(s) 644, 677
FokI GGATG 3 cut(s) 113, 617, 1012
Fsp4HI GCNGC 2 cut(s) 644, 677
FspBI CTAG 4 cut(s) 680, 741, 912, 1058
GlaI GCGC 2 cut(s) 472, 547
GluI GCNGC 2 cut(s) 644, 677
GsaI CCCAGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 3 cut(s) 109, 497, 816
HapII CCGG 1 cut(s) 223
HgaI GACGC 1 cut(s) 82
HhaI GCGC 2 cut(s) 473, 548
Hin1II CATG 5 cut(s) 185, 259, 502, 871, 983
Hin6I GCGC 2 cut(s) 471, 546
HinP1I GCGC 2 cut(s) 471, 546
HincII GTYRAC 2 cut(s) 904, 1090
HindII GTYRAC 2 cut(s) 904, 1090
HpaI GTTAAC 1 cut(s) 1090
HpaII CCGG 1 cut(s) 223
Hpy166II GTNNAC 4 cut(s) 193, 535, 904, 1090
Hpy188I TCNGA 3 cut(s) 412, 463, 772
Hpy188III TCNNGA 6 cut(s) 40, 434, 572, 953, 969, 1021
Hpy8I GTNNAC 4 cut(s) 193, 535, 904, 1090
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 2 cut(s) 19, 532
HpyCH4IV ACGT 6 cut(s) 195, 277, 298, 657, 670, 1101
HpyCH4V TGCA 5 cut(s) 486, 502, 540, 594, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
HpyF3I CTNAG 3 cut(s) 771, 951, 1004
HpySE526I ACGT 6 cut(s) 195, 277, 298, 657, 670, 1101
Hsp92II CATG 5 cut(s) 185, 259, 502, 871, 983
HspAI GCGC 2 cut(s) 471, 546
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 1090
Kzo9I GATC 3 cut(s) 184, 316, 367
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 2 cut(s) 630, 663
LweI GCATC 1 cut(s) 439
MaeI CTAG 4 cut(s) 680, 741, 912, 1058
MaeII ACGT 6 cut(s) 195, 277, 298, 657, 670, 1101
MaeIII GTNAC 2 cut(s) 278, 352
MalI GATC 3 cut(s) 186, 318, 369
MboI GATC 3 cut(s) 184, 316, 367
MboII GAAGA 9 cut(s) 44, 145, 185, 225, 263, 439, 677, 1091, 1101
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 6 cut(s) 218, 263, 284, 720, 729, 857
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 147
Mox20I TGGCCA 1 cut(s) 497
MroXI GAANNNNTTC 2 cut(s) 617, 1053
MscI TGGCCA 1 cut(s) 497
MseI TTAA 3 cut(s) 728, 759, 1089
MslI CAYNNNNRTG 2 cut(s) 375, 872
Msp20I TGGCCA 1 cut(s) 497
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 931
MwoI GCNNNNNNNGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 224
NdeII GATC 3 cut(s) 184, 316, 367
NheI GCTAGC 1 cut(s) 679
NlaIII CATG 5 cut(s) 185, 259, 502, 871, 983
NlaIV GGNNCC 3 cut(s) 63, 386, 529
NmuCI GTSAC 1 cut(s) 352
PctI GAATGC 1 cut(s) 931
PdmI GAANNNNTTC 2 cut(s) 617, 1053
PflMI CCANNNNNTGG 2 cut(s) 105, 245
PkrI GCNGC 2 cut(s) 645, 678
Ppu21I YACGTR 1 cut(s) 1102
PshBI ATTAAT 1 cut(s) 728
PsiI TTATAA 1 cut(s) 999
Psp1406I AACGTT 1 cut(s) 670
PspFI CCCAGC 1 cut(s) 452
PspN4I GGNNCC 3 cut(s) 63, 386, 529
PspPI GGNCC 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 416
RsaI GTAC 3 cut(s) 276, 297, 824
RsaNI GTAC 3 cut(s) 275, 296, 823
RseI CAYNNNNRTG 2 cut(s) 375, 872
SaqAI TTAA 3 cut(s) 728, 759, 1089
SatI GCNGC 2 cut(s) 644, 677
Sau3AI GATC 3 cut(s) 184, 316, 367
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 387
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 511
SmiMI CAYNNNNRTG 2 cut(s) 375, 872
Sse9I AATT 6 cut(s) 218, 263, 284, 720, 729, 857
SsiI CCGC 1 cut(s) 687
SspMI CTAG 4 cut(s) 680, 741, 912, 1058
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 2 cut(s) 239, 705
TaaI ACNGT 2 cut(s) 19, 532
TaiI ACGT 6 cut(s) 198, 280, 301, 660, 673, 1104
TaqI TCGA 2 cut(s) 30, 435
TasI AATT 6 cut(s) 218, 263, 284, 720, 729, 857
TatI WGTACW 1 cut(s) 822
Tru1I TTAA 3 cut(s) 728, 759, 1089
Tru9I TTAA 3 cut(s) 728, 759, 1089
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 643, 676
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 396, 542, 610
TspGWI ACGGA 1 cut(s) 1018
TspRI CASTG 1 cut(s) 859
Van91I CCANNNNNTGG 2 cut(s) 105, 245
VspI ATTAAT 1 cut(s) 728
XagI CCTNNNNNAGG 1 cut(s) 950
XapI RAATTY 4 cut(s) 263, 284, 720, 857
XmiI GTMKAC 2 cut(s) 192, 534
XmnI GAANNNNTTC 2 cut(s) 617, 1053
XspI CTAG 4 cut(s) 680, 741, 912, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.