Rh4BG014200

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Reverse (-)
1988813 .. 1989247
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG014200.1

Sequence Viewer

Length: 435 bp
ATGTGTGTCTCCAAGCAATGGCTCTCTCTCATCTCCGACCCCGAGTTCCGTCGCCGCCACACCCTCCGAAACCCTAACTCCAAAATCTCAGCTTCCTTCAAGTCCATCCTTCTTGGTAACCATGAAATCCCACCTGGGTGGAATCCCTTCAAAACCCTTAAGAATTCCGATTCCGTCCCTGATGTATCCGAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCCATATTCCTAGATCTGGACTTGAAACAAAAAATCATCCCGTATATGTTGTCAATCCCACAACCAACGAATTCCGGGCTCTTTCTTTTCCAGTTGTCAGACATAGTAGTGATTCTTTATTTGTGCGCTATGCTTTGGCTTTTGATCCTTCCAAGTCGCCTCATTACAAGGTGGTTTGCGTGACTAACAACCCCCATAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

144

Amino Acids

16.35

Weight (kDa)

9.55

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 54 - 138 3.4e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 2 cut(s) 163, 299
AcuI CTGAAG 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 18, 195, 245
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 100, 151, 254
AjnI CCWGG 1 cut(s) 133
AleI CACNNNNGTG 1 cut(s) 136
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 163, 299
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 41
BanII GRGCYC 1 cut(s) 310
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 135
BciVI GTATCC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 240
BfrI CTTAAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 196
BglII AGATCT 1 cut(s) 242
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 135, 305
BmeT110I CYCGRG 1 cut(s) 41
BmrFI CCNGG 2 cut(s) 135, 305
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 195, 245
Bse1I ACTGG 1 cut(s) 320
Bse3DI GCAATG 2 cut(s) 23, 220
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 105, 265
BseLI CCNNNNNNNGG 3 cut(s) 18, 195, 245
BseMI GCAATG 2 cut(s) 23, 220
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 320
BshFI GGCC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 18, 195, 245
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 242, 373
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 101
BspPI GGATC 1 cut(s) 368
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 23, 220
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 242, 373
Bst2UI CCWGG 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 88
BstEII GGTNACC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 105, 265
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 245, 376
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 242, 373
BstNI CCWGG 1 cut(s) 135
BstPI GGTNACC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 133, 303
BstX2I RGATCY 1 cut(s) 242
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 1 cut(s) 242
BsuI GTATCC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 105, 265
CfoI GCGC 1 cut(s) 357
CviAII CATG 1 cut(s) 122
CviJI RGCY 5 cut(s) 22, 92, 219, 308, 368
CviKI_1 RGCY 5 cut(s) 22, 92, 219, 308, 368
DdeI CTNAG 1 cut(s) 88
DpnI GATC 2 cut(s) 244, 375
DpnII GATC 2 cut(s) 242, 373
Eco24I GRGCYC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 116
EcoRI GAATTC 2 cut(s) 163, 299
EcoRII CCWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 310
FaeI CATG 1 cut(s) 125
FaiI YATR 8 cut(s) 123, 234, 274, 276, 333, 360, 426, 433
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 92, 252
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 240
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 304
HhaI GCGC 1 cut(s) 357
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HinfI GANTC 4 cut(s) 142, 170, 199, 341
HpaII CCGG 1 cut(s) 304
Hpy188I TCNGA 5 cut(s) 37, 68, 169, 190, 329
Hpy188III TCNNGA 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 106, 119, 157, 387
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 2 cut(s) 242, 373
LpnPI CCDG 7 cut(s) 120, 147, 192, 223, 231, 317, 333
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 116, 409
MalI GATC 2 cut(s) 244, 375
MboI GATC 2 cut(s) 242, 373
MboII GAAGA 1 cut(s) 194
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 3 cut(s) 163, 299, 427
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 74, 189, 230, 399
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 2 cut(s) 136, 336
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 135, 305
MvaI CCWGG 1 cut(s) 135
NciI CCSGG 1 cut(s) 305
NdeII GATC 2 cut(s) 242, 373
NlaIII CATG 1 cut(s) 125
NmuCI GTSAC 1 cut(s) 409
OliI CACNNNNGTG 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 4 cut(s) 142, 170, 199, 341
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 133
PspEI GGTNACC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 136, 336
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 242, 373
ScrFI CCNGG 2 cut(s) 135, 305
SduI GDGCHC 1 cut(s) 310
SetI ASST 3 cut(s) 94, 136, 402
SmiMI CAYNNNNRTG 2 cut(s) 136, 336
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 163, 299, 427
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 133, 303
TasI AATT 3 cut(s) 163, 299, 427
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 4 cut(s) 142, 170, 199, 341
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 38, 163
Van91I CCANNNNNTGG 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 158
XapI RAATTY 2 cut(s) 163, 299
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.