Rh4BG089200

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Forward (+)
15380179 .. 15380499
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG089200.1

Sequence Viewer

Length: 321 bp
ATGGAGATGGGGAAGGACTACTGTGGCTGGTTTGTCAAGTATCATGTTGATCTTAATCCCGTAGTTGCTGCATTCCGTGGCAATTATGATCACTTTTCTCGTTTTTATGTCTTGTTTCTTGGTGGAGAGGGAAAAGAAGAACAAGATCAACAGCAACAGGAGGAGGTTTCTTCATCTCTTTTGTTCCATGTTCCTGGTAAGGTCATATCTTATAATCTTAGAAATAAGACCTTTAAGACATATGTGGACTTGGCCATTAAGGACTATTTTCTAGTTGGGGGATATAATTATCCTTACATGGAGACTTTAGCTTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

106

Amino Acids

12.34

Weight (kDa)

5.5

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 252
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 311
AluI AGCT 1 cut(s) 311
Alw26I GTCTC 1 cut(s) 296
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 254
BbvI GCAGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 54
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 54
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 3 cut(s) 49, 88, 145
BspANI GGCC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 3 cut(s) 49, 88, 145
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 76
BstKTI GATC 3 cut(s) 52, 91, 148
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 49, 88, 145
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 254
BtgI CCRYGG 1 cut(s) 76
CviAII CATG 3 cut(s) 44, 188, 298
CviJI RGCY 3 cut(s) 27, 254, 311
CviKI_1 RGCY 3 cut(s) 27, 254, 311
DdeI CTNAG 1 cut(s) 218
DpnI GATC 3 cut(s) 51, 90, 147
DpnII GATC 3 cut(s) 49, 88, 145
EaeI YGGCCR 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 47, 191, 301
FatI CATG 3 cut(s) 43, 187, 297
FauNDI CATATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 254
Hin1II CATG 3 cut(s) 47, 191, 301
Hpy166II GTNNAC 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 3 cut(s) 47, 191, 301
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 3 cut(s) 49, 88, 145
LpnPI CCDG 4 cut(s) 13, 143, 180, 207
Lsp1109I GCAGC 1 cut(s) 55
MaeI CTAG 1 cut(s) 272
MalI GATC 3 cut(s) 51, 90, 147
MboI GATC 3 cut(s) 49, 88, 145
MboII GAAGA 2 cut(s) 149, 162
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 2 cut(s) 82, 286
MluNI TGGCCA 1 cut(s) 254
MnlI CCTC 3 cut(s) 121, 154, 157
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 3 cut(s) 54, 234, 258
Msp20I TGGCCA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 1 cut(s) 195
NdeI CATATG 1 cut(s) 241
NdeII GATC 3 cut(s) 49, 88, 145
NlaIII CATG 3 cut(s) 47, 191, 301
PctI GAATGC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
SaqAI TTAA 3 cut(s) 54, 234, 258
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 49, 88, 145
ScrFI CCNGG 1 cut(s) 195
SetI ASST 4 cut(s) 168, 204, 233, 313
Sse9I AATT 2 cut(s) 82, 286
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 23
TasI AATT 2 cut(s) 82, 286
Tru1I TTAA 3 cut(s) 54, 234, 258
Tru9I TTAA 3 cut(s) 54, 234, 258
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 65
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.