FvH4_4g01472

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000449
Physical Location & Seq
Reverse (-)
1340498 .. 1342980
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01472.t1

Sequence Viewer

Length: 234 bp
ATGGAGAGGGACTACCCTGGCTGGCTTGTCAAGTATCGTGTTGATCTTAATCTGCTAGTCGCAGCTCTTCCTGGAGAGGATTGGAATGCTTGTGTTGTCTTGGGCCTTTCTCAAGAGGATGAGACAGATAATGGGGTTGAGGATACTTCAACTCATCTTTTGTTGCAGCTGCCTGGTAAGATCATATCCTATAATCTGAGGGAAGACCTAGCTTCAAGACATCTGTTGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

78

Amino Acids

8.68

Weight (kDa)

4.46

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 150, 216
AjnI CCWGG 3 cut(s) 16, 70, 172
AluBI AGCT 3 cut(s) 65, 169, 212
AluI AGCT 3 cut(s) 65, 169, 212
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 62, 166, 169
AspS9I GGNCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 74, 156, 178
BciT130I CCWGG 3 cut(s) 18, 72, 174
BciVI GTATCC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 56, 209
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 3 cut(s) 63, 167, 170
BlsI GCNGC 3 cut(s) 64, 168, 171
Bme1390I CCNGG 3 cut(s) 18, 72, 174
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 3 cut(s) 18, 72, 174
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 3 cut(s) 18, 72, 174
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 48
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 74, 156, 178
BshFI GGCC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 43, 180
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 43, 180
Bst2UI CCWGG 3 cut(s) 18, 72, 174
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 2 cut(s) 46, 183
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 43, 180
BstNI CCWGG 3 cut(s) 18, 72, 174
BstSCI CCNGG 3 cut(s) 16, 70, 172
BstV1I GCAGC 3 cut(s) 74, 156, 178
BstV2I GAAGAC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 103
CviJI RGCY 6 cut(s) 21, 25, 65, 105, 169, 212
CviKI_1 RGCY 6 cut(s) 21, 25, 65, 105, 169, 212
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 45, 182
DpnII GATC 2 cut(s) 43, 180
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EcoRII CCWGG 3 cut(s) 16, 70, 172
FaiI YATR 2 cut(s) 185, 192
FaqI GGGAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 63, 167, 170
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 63, 167, 170
FspBI CTAG 2 cut(s) 56, 209
GluI GCNGC 3 cut(s) 63, 167, 170
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 2 cut(s) 113, 216
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 197
Kzo9I GATC 2 cut(s) 43, 180
LguI GCTCTTC 1 cut(s) 72
LpnPI CCDG 7 cut(s) 3, 7, 30, 57, 84, 159, 186
Lsp1109I GCAGC 3 cut(s) 74, 156, 178
MaeI CTAG 2 cut(s) 56, 209
MalI GATC 2 cut(s) 45, 182
MboI GATC 2 cut(s) 43, 180
MboII GAAGA 2 cut(s) 59, 215
MnlI CCTC 4 cut(s) 70, 109, 133, 192
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 18, 72, 174
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 3 cut(s) 18, 72, 174
NdeII GATC 2 cut(s) 43, 180
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 3 cut(s) 64, 168, 171
Psp6I CCWGG 3 cut(s) 16, 70, 172
PspGI CCWGG 3 cut(s) 16, 70, 172
PspPI GGNCC 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 63, 167, 170
Sau3AI GATC 2 cut(s) 43, 180
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 3 cut(s) 18, 72, 174
SetI ASST 4 cut(s) 67, 171, 210, 214
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
SspMI CTAG 2 cut(s) 56, 209
StyD4I CCNGG 3 cut(s) 16, 70, 172
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 3 cut(s) 62, 166, 169
XspI CTAG 2 cut(s) 56, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.