Rh4BG014700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Reverse (-)
2124338 .. 2125009
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG014700.1

Sequence Viewer

Length: 672 bp
ATGACACAGCTGAGCGTTTCATCAGCAGAGAGCGTAGCGAATATTGAAGAGCTTCTTAGTCAGATTCTTGTATGGGTTCCTGCTCTATCTCTGATCCGTTTCAAGTGCGTCTCCAAGCACTGGCTCGCTCTCATCTCCGACCCCGAGTTCCGTCGCCGCCACACCCTCCGAAACCCTAACTCCAAAATCTCAGCTTTCTTCTCTCCCCAAACCAATGAAGAAACCTTCAAGTCCATCCGTCTTGGTAACCATGAAATCCCACCTAGGTGCAATCCCTTCAAAACCCTAAACAATTCCGTCGCTGATGCGTCAAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCCATATTCCTATTACTATATATGGAGAACAAACAAAACATCATCCCGTATATGTTGTCAATCCCACAACCAACCAATTCCGGGCCCTCTCTTTTCCAATTGTCAAAGAAGACAGGGACAGATATACTTTTGTACGCTATGCTTTGGCATTTGATCCTTCCACATCGCCTCATTACAAGGTGGTCTGCGTGAATGACTTTCCCCATTATTATAAAAGGAGGCAGCACAAAATAGACATATATTCATCTGAGACCGGAGAGTGGAAGCGGTTCCTTTCTTCCCAAGCCCTTCTGACGTGGTCAGACACCATGATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

223

Amino Acids

25.83

Weight (kDa)

9.34

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 52 1.5e-06 F-box domain
FBA_1 PF07734 85 - 209 1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 120
AciI CCGC 2 cut(s) 157, 619
AclWI GGATC 2 cut(s) 88, 500
AcuI CTGAAG 1 cut(s) 311
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 3 cut(s) 120, 433, 612
AgsI TTSAA 4 cut(s) 47, 103, 229, 280
AjiI CACGTC 1 cut(s) 648
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 3 cut(s) 10, 52, 194
AluI AGCT 3 cut(s) 10, 52, 194
Alw26I GTCTC 2 cut(s) 115, 596
AlwI GGATC 2 cut(s) 88, 500
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 2 cut(s) 340, 435
ApaI GGGCCC 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 574
Asp700I GAANNNNTTC 2 cut(s) 51, 620
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 435, 436
AsuC2I CCSGG 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 143
AvrII CCTAGG 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 2 cut(s) 115, 596
BfaI CTAG 1 cut(s) 264
BisI GCNGC 2 cut(s) 157, 575
BlnI CCTAGG 1 cut(s) 263
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 2 cut(s) 158, 576
Bme1390I CCNGG 1 cut(s) 434
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 648
BmgT120I GGNCC 2 cut(s) 435, 436
BmiI GGNNCC 3 cut(s) 78, 437, 623
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 434
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 433, 612
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 234, 394
BseLI CCNNNNNNNGG 3 cut(s) 120, 433, 612
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 204, 591
BseNI ACTGG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 586
BshFI GGCC 2 cut(s) 342, 437
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 2 cut(s) 433, 606
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 3 cut(s) 120, 433, 612
BsmAI GTCTC 2 cut(s) 115, 596
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 2 cut(s) 342, 437
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 143
Bsp120I GGGCCC 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 2 cut(s) 93, 505
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 2 cut(s) 157, 619
BspANI GGCC 2 cut(s) 342, 437
BspCNI CTCAG 2 cut(s) 203, 592
BspLI GGNNCC 3 cut(s) 78, 437, 623
BspPI GGATC 2 cut(s) 88, 500
BspQI GCTCTTC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 2 cut(s) 93, 505
BssT1I CCWWGG 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 11, 56, 190, 600
BstEII GGTNACC 1 cut(s) 245
BstF5I GGATG 2 cut(s) 234, 394
BstKTI GATC 2 cut(s) 96, 508
BstMAI GTCTC 2 cut(s) 115, 596
BstMBI GATC 2 cut(s) 93, 505
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 342, 437
BtgZI GCGATG 1 cut(s) 501
BtrI CACGTC 1 cut(s) 648
BtsCI GGATG 2 cut(s) 234, 394
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 435, 436
CseI GACGC 2 cut(s) 97, 297
Csp6I GTAC 1 cut(s) 485
CviAII CATG 2 cut(s) 251, 661
CviJI RGCY 7 cut(s) 10, 52, 124, 194, 342, 437, 638
CviKI_1 RGCY 7 cut(s) 10, 52, 124, 194, 342, 437, 638
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 4 cut(s) 11, 56, 190, 600
DpnI GATC 2 cut(s) 95, 507
DpnII GATC 2 cut(s) 93, 505
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 436
EcoO65I GGTNACC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 254, 664
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 482
FatI CATG 2 cut(s) 250, 660
Fnu4HI GCNGC 2 cut(s) 157, 575
FokI GGATG 2 cut(s) 221, 381
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 2 cut(s) 157, 575
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 157, 575
HaeIII GGCC 2 cut(s) 342, 437
HapII CCGG 2 cut(s) 433, 606
HgaI GACGC 2 cut(s) 97, 297
Hin1II CATG 2 cut(s) 254, 664
HinfI GANTC 2 cut(s) 64, 322
HpaII CCGG 2 cut(s) 433, 606
Hpy188I TCNGA 7 cut(s) 63, 93, 139, 170, 601, 645, 655
Hpy99I CGWCG 2 cut(s) 156, 302
HpyAV CCTTC 4 cut(s) 235, 286, 519, 650
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 2 cut(s) 270, 336
HpyF3I CTNAG 4 cut(s) 11, 56, 190, 600
HpySE526I ACGT 1 cut(s) 647
Hsp92II CATG 2 cut(s) 254, 664
Kzo9I GATC 2 cut(s) 93, 505
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 93, 106, 346, 446, 451, 619
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 95, 507
MboI GATC 2 cut(s) 93, 505
MboII GAAGA 6 cut(s) 59, 190, 230, 317, 473, 621
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 3 cut(s) 292, 428, 450
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 176, 312, 353, 449, 531, 564
MroXI GAANNNNTTC 2 cut(s) 51, 620
MslI CAYNNNNRTG 1 cut(s) 265
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 2 cut(s) 433, 606
MspR9I CCNGG 1 cut(s) 434
MunI CAATTG 1 cut(s) 450
NciI CCSGG 1 cut(s) 434
NdeII GATC 2 cut(s) 93, 505
NlaIII CATG 2 cut(s) 254, 664
NlaIV GGNNCC 3 cut(s) 78, 437, 623
OliI CACNNNNGTG 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 42
PdmI GAANNNNTTC 2 cut(s) 51, 620
PfeI GAWTC 2 cut(s) 64, 322
PflFI GACNNNGTC 1 cut(s) 649
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 2 cut(s) 158, 576
PsiI TTATAA 1 cut(s) 564
PspEI GGTNACC 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 78, 437, 623
PspOMI GGGCCC 1 cut(s) 435
PspPI GGNCC 2 cut(s) 435, 436
PsyI GACNNNGTC 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 265
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 2 cut(s) 157, 575
Sau3AI GATC 2 cut(s) 93, 505
Sau96I GGNCC 2 cut(s) 435, 436
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 439
SetI ASST 8 cut(s) 12, 54, 196, 227, 265, 269, 534, 650
SfaNI GCATC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 265
Sse9I AATT 3 cut(s) 292, 428, 450
SsiI CCGC 2 cut(s) 157, 619
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 650
TasI AATT 3 cut(s) 292, 428, 450
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 64, 322
TscAI CASTG 1 cut(s) 125
TseI GCWGC 1 cut(s) 574
TspDTI ATGAA 5 cut(s) 9, 231, 267, 585, 657
TspGWI ACGGA 4 cut(s) 86, 140, 227, 286
TspRI CASTG 1 cut(s) 125
Tth111I GACNNNGTC 1 cut(s) 649
Van91I CCANNNNNTGG 1 cut(s) 120
XmaJI CCTAGG 1 cut(s) 263
XmnI GAANNNNTTC 2 cut(s) 51, 620
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.