FvH4_6g31150

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000449
Physical Location & Seq
Forward (+)
24321059 .. 24322301
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31150.t1

Sequence Viewer

Length: 1158 bp
ATGAAGAAGAAGTCGTCATGTTCAGCAGAGATCGTGGGGAGTATCGACGAGCTCCTTACGCAGATCCTTGAAAGGGTGCCGGCTCTATCTCTGATCCGCTCCAAATGCGTCTCCAAGCAGTGGCTCTCTCTCATCTCCGACCCCGACTTCCATCGCCGCCACACTTTCCAAAACCCTAACCCCAAAATCTTGGCTTTCCTCTCTCCCGAAACCAATCAAGACCAAAAACATCGACCCGTCTATGTTGTGAATCCCACCACCAACCAATTCCGGGCTCTTTTCCCTCCCACCCTCAGGGATGACGTCACCAGGTCTACTCTTGTGCGCTACGCTTTGGCTTTCGATCCTTCTCAGTCCCCTCATTACAAGGTGCTCTGCGTCACTAACGATGATGATGATGGGGGGCATCACGACATCGAGATATATTCATCCGAGACAGGAGAGTGGAAGCATCTCAAGACTCCTTACTTCCCCAGAGAGAGGGCCATGCACTTCGGGTGGAGGAGCCGGTTAGGTGCCGTGTACTGCAACGGCGCAGTTCATTGGTTACGAAGCAGACACGAAGCAGGCTTGCGGTTCGGCTTATATGGTGGGAATGGAATCATGGGATTCAGAAGGGAGAAGAAAACTGGCGTGCTGCACTACTTTGAGATAAGCCAAGAGCGTTTCCTGGTCGTGTCCGCTATCCCCCCTGTCCCCTCCGTGGTTAAAAACATTCCACTCAAGGGTAATGAACCAACTACATGGCCGAATTTGGCTCAGAGATATTTTGGGGTGTGCGGTGGCCGTTTGTACCTGATTGAGACTTATGACCATTGTTTGACCCAGTTTGATGTGATGGAGATGGAGAAGGACTACTCTGGCTGGTTTGTCAAGTATCAGGTTGATCTTAATCCGCTTGTCGCAGCTTTCCCTGGGCAGGACTGTAATGTTTTTGTTGTCTTGTGTCTTTTTCAAGAGGAGGAAACAGATTATGGGGTTGAGGACACTTCAACTCATCTCTTGTTGCACCTGTCTGGTAAGGTCATATCTTATAATCTTAGGAGTAAGACCTTCAGGACGTCTGTTGAGTTAGTCAACAAGGAACTAGCTTTAGGTAATCATCTATATCTAGAGGATGTTGTTTTTCCTTACATGGAGACTTTAACTTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

386

Amino Acids

44.16

Weight (kDa)

6.73

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 52 1e-07 F-box domain
FBA_3 PF08268 76 - 181 1.2e-06 F-box associated beta propeller domain
FBA_1 PF07734 77 - 230 4.6e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1035
AatII GACGTC 2 cut(s) 306, 1064
AccB1I GGYRCC 2 cut(s) 76, 515
AccB7I CCANNNNNTGG 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 314
AciI CCGC 6 cut(s) 97, 157, 574, 681, 780, 896
AclWI GGATC 3 cut(s) 58, 88, 338
AcoI YGGCCR 2 cut(s) 746, 784
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 1039
AcyI GRCGYC 2 cut(s) 303, 1061
AfaI GTAC 2 cut(s) 524, 794
AfiI CCNNNNNNNGG 8 cut(s) 73, 120, 271, 294, 480, 703, 725, 919
AgsI TTSAA 3 cut(s) 71, 956, 993
AjnI CCWGG 3 cut(s) 308, 669, 913
AluBI AGCT 3 cut(s) 52, 908, 1091
AluI AGCT 3 cut(s) 52, 908, 1091
Alw21I GWGCWC 2 cut(s) 54, 375
Alw26I GTCTC 4 cut(s) 115, 428, 797, 1133
AlwI GGATC 3 cut(s) 58, 88, 338
AoxI GGCC 3 cut(s) 483, 746, 784
ApeKI GCWGC 2 cut(s) 637, 905
ApoI RAATTY 1 cut(s) 751
AspLEI GCGC 2 cut(s) 327, 536
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 298
AxyI CCTNAGG 1 cut(s) 293
BanI GGYRCC 2 cut(s) 76, 515
BanII GRGCYC 2 cut(s) 54, 277
Bbv12I GWGCWC 2 cut(s) 54, 375
BbvI GCAGC 2 cut(s) 624, 917
BccI CCATC 4 cut(s) 159, 392, 832, 838
BceAI ACGGC 3 cut(s) 503, 547, 771
BciT130I CCWGG 3 cut(s) 310, 671, 915
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 4 cut(s) 115, 428, 797, 1133
BfaI CTAG 2 cut(s) 1088, 1112
BisI GCNGC 3 cut(s) 157, 638, 906
BlsI GCNGC 3 cut(s) 158, 639, 907
Bme1390I CCNGG 4 cut(s) 272, 310, 671, 915
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 3 cut(s) 78, 506, 517
BmrFI CCNGG 4 cut(s) 272, 310, 671, 915
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 2 cut(s) 415, 460
BmuI ACTGGG 1 cut(s) 820
BpuEI CTTGAG 2 cut(s) 440, 707
BpuMI CCSGG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 891
BsaHI GRCGYC 2 cut(s) 303, 1061
BsaJI CCNNGG 3 cut(s) 702, 913, 914
Bsc4I CCNNNNNNNGG 8 cut(s) 73, 120, 271, 294, 480, 703, 725, 919
Bse118I RCCGGY 2 cut(s) 79, 507
Bse1I ACTGG 2 cut(s) 634, 826
Bse21I CCTNAGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 891
BseBI CCWGG 3 cut(s) 310, 671, 915
BseDI CCNNGG 3 cut(s) 702, 913, 914
BseGI GGATG 3 cut(s) 304, 428, 1123
BseJI GATNNNNATC 1 cut(s) 891
BseLI CCNNNNNNNGG 8 cut(s) 73, 120, 271, 294, 480, 703, 725, 919
BseMII CTCAG 3 cut(s) 307, 365, 773
BseNI ACTGG 2 cut(s) 634, 826
BseRI GAGGAG 2 cut(s) 517, 974
BseXI GCAGC 2 cut(s) 624, 917
BsgI GTGCAG 1 cut(s) 623
BshFI GGCC 3 cut(s) 485, 748, 786
BshNI GGYRCC 2 cut(s) 76, 515
BsiHKAI GWGCWC 2 cut(s) 54, 375
BsiSI CCGG 3 cut(s) 80, 271, 508
BslFI GGGAC 2 cut(s) 340, 680
BslI CCNNNNNNNGG 8 cut(s) 73, 120, 271, 294, 480, 703, 725, 919
BsmAI GTCTC 4 cut(s) 115, 428, 797, 1133
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 2 cut(s) 340, 680
BsnI GGCC 3 cut(s) 485, 748, 786
Bsp1286I GDGCHC 3 cut(s) 54, 277, 375
Bsp143I GATC 5 cut(s) 30, 63, 93, 343, 886
BspACI CCGC 6 cut(s) 97, 157, 574, 681, 780, 896
BspANI GGCC 3 cut(s) 485, 748, 786
BspCNI CTCAG 3 cut(s) 306, 364, 772
BspLI GGNNCC 3 cut(s) 78, 506, 517
BspPI GGATC 3 cut(s) 58, 88, 338
BspT107I GGYRCC 2 cut(s) 76, 515
BsrBI CCGCTC 1 cut(s) 99
BsrFI RCCGGY 2 cut(s) 79, 507
BsrI ACTGG 2 cut(s) 634, 826
BssAI RCCGGY 2 cut(s) 79, 507
BssECI CCNNGG 3 cut(s) 702, 913, 914
BssMI GATC 5 cut(s) 30, 63, 93, 343, 886
BssNI GRCGYC 2 cut(s) 303, 1061
Bst2UI CCWGG 3 cut(s) 310, 671, 915
Bst4CI ACNGT 1 cut(s) 926
BstACI GRCGYC 2 cut(s) 303, 1061
BstC8I GCNNGC 4 cut(s) 81, 568, 572, 635
BstDEI CTNAG 4 cut(s) 293, 351, 759, 1040
BstDSI CCRYGG 1 cut(s) 702
BstF5I GGATG 3 cut(s) 304, 428, 1123
BstHHI GCGC 2 cut(s) 327, 536
BstKTI GATC 5 cut(s) 33, 66, 96, 346, 889
BstMAI GTCTC 4 cut(s) 115, 428, 797, 1133
BstMBI GATC 5 cut(s) 30, 63, 93, 343, 886
BstMWI GCNNNNNNNGC 2 cut(s) 58, 105
BstNI CCWGG 3 cut(s) 310, 671, 915
BstSCI CCNGG 4 cut(s) 270, 308, 669, 913
BstV1I GCAGC 2 cut(s) 624, 917
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 2 cut(s) 190, 744
BstYI RGATCY 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 293
BsuRI GGCC 3 cut(s) 485, 748, 786
BtgI CCRYGG 1 cut(s) 702
BtgZI GCGATG 1 cut(s) 137
BtsCI GGATG 3 cut(s) 304, 428, 1123
BtsI GCAGTG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 125
Cac8I GCNNGC 4 cut(s) 81, 568, 572, 635
CfoI GCGC 2 cut(s) 327, 536
Cfr10I RCCGGY 2 cut(s) 79, 507
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 2 cut(s) 97, 367
CsiI ACCWGGT 1 cut(s) 308
Csp6I GTAC 2 cut(s) 523, 793
CviAII CATG 5 cut(s) 18, 487, 604, 744, 1135
CviQI GTAC 2 cut(s) 523, 793
DdeI CTNAG 4 cut(s) 293, 351, 759, 1040
DpnI GATC 5 cut(s) 32, 65, 95, 345, 888
DpnII GATC 5 cut(s) 30, 63, 93, 343, 886
EaeI YGGCCR 2 cut(s) 746, 784
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 2 cut(s) 54, 277
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 1039
Eco81I CCTNAGG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 3 cut(s) 308, 669, 913
EcoT38I GRGCYC 2 cut(s) 54, 277
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 5 cut(s) 21, 490, 607, 747, 1138
FaqI GGGAC 2 cut(s) 340, 680
FatI CATG 5 cut(s) 17, 486, 603, 743, 1134
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 3 cut(s) 157, 638, 906
FokI GGATG 3 cut(s) 311, 415, 1130
FriOI GRGCYC 2 cut(s) 54, 277
Fsp4HI GCNGC 3 cut(s) 157, 638, 906
FspBI CTAG 2 cut(s) 1088, 1112
GlaI GCGC 2 cut(s) 326, 535
GluI GCNGC 3 cut(s) 157, 638, 906
HaeIII GGCC 3 cut(s) 485, 748, 786
HapII CCGG 3 cut(s) 80, 271, 508
HgaI GACGC 2 cut(s) 97, 367
HhaI GCGC 2 cut(s) 327, 536
Hin1I GRCGYC 2 cut(s) 303, 1061
Hin1II CATG 5 cut(s) 21, 490, 607, 747, 1138
Hin6I GCGC 2 cut(s) 325, 534
HinP1I GCGC 2 cut(s) 325, 534
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HinfI GANTC 4 cut(s) 250, 460, 600, 609
HpaII CCGG 3 cut(s) 80, 271, 508
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 3 cut(s) 315, 523, 1078
Hpy188I TCNGA 5 cut(s) 93, 139, 433, 614, 762
Hpy188III TCNNGA 8 cut(s) 206, 218, 410, 418, 457, 956, 1057, 1112
Hpy8I GTNNAC 3 cut(s) 315, 523, 1078
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 4 cut(s) 357, 609, 844, 1063
HpyCH4III ACNGT 1 cut(s) 926
HpyCH4IV ACGT 2 cut(s) 303, 1061
HpyCH4V TGCA 4 cut(s) 490, 528, 640, 1009
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 105
HpyF3I CTNAG 4 cut(s) 293, 351, 759, 1040
HpySE526I ACGT 2 cut(s) 303, 1061
Hsp92I GRCGYC 2 cut(s) 303, 1061
Hsp92II CATG 5 cut(s) 21, 490, 607, 747, 1138
HspAI GCGC 2 cut(s) 325, 534
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 5 cut(s) 30, 63, 93, 343, 886
LmnI GCTCC 3 cut(s) 57, 104, 504
Lsp1109I GCAGC 2 cut(s) 624, 917
LweI GCATC 2 cut(s) 415, 460
MabI ACCWGGT 1 cut(s) 308
MaeI CTAG 2 cut(s) 1088, 1112
MaeII ACGT 2 cut(s) 303, 1061
MaeIII GTNAC 3 cut(s) 304, 379, 546
MalI GATC 5 cut(s) 32, 65, 95, 345, 888
MbiI CCGCTC 1 cut(s) 99
MboI GATC 5 cut(s) 30, 63, 93, 343, 886
MboII GAAGA 3 cut(s) 16, 19, 634
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 3 cut(s) 54, 277, 375
MluCI AATT 2 cut(s) 266, 751
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 79
MseI TTAA 3 cut(s) 708, 891, 1145
MspI CCGG 3 cut(s) 80, 271, 508
MspR9I CCNGG 4 cut(s) 272, 310, 671, 915
MvaI CCWGG 3 cut(s) 310, 671, 915
MwoI GCNNNNNNNGC 2 cut(s) 58, 105
NaeI GCCGGC 1 cut(s) 81
NciI CCSGG 1 cut(s) 272
NdeII GATC 5 cut(s) 30, 63, 93, 343, 886
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 5 cut(s) 21, 490, 607, 747, 1138
NlaIV GGNNCC 3 cut(s) 78, 506, 517
NmuCI GTSAC 2 cut(s) 304, 379
PasI CCCWGGG 1 cut(s) 914
PdiI GCCGGC 1 cut(s) 81
PfeI GAWTC 3 cut(s) 250, 600, 609
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 3 cut(s) 158, 639, 907
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PsiI TTATAA 1 cut(s) 1035
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 308, 669, 913
PspGI CCWGG 3 cut(s) 308, 669, 913
PspN4I GGNNCC 3 cut(s) 78, 506, 517
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 524, 794
RsaNI GTAC 2 cut(s) 523, 793
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 708, 891, 1145
SatI GCNGC 3 cut(s) 157, 638, 906
Sau3AI GATC 5 cut(s) 30, 63, 93, 343, 886
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 4 cut(s) 272, 310, 671, 915
SduI GDGCHC 3 cut(s) 54, 277, 375
SexAI ACCWGGT 1 cut(s) 308
SfaNI GCATC 2 cut(s) 415, 460
SmlI CTYRAG 2 cut(s) 455, 722
SmoI CTYRAG 2 cut(s) 455, 722
Sse9I AATT 2 cut(s) 266, 751
SsiI CCGC 6 cut(s) 97, 157, 574, 681, 780, 896
SspMI CTAG 2 cut(s) 1088, 1112
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 4 cut(s) 270, 308, 669, 913
TaaI ACNGT 1 cut(s) 926
TaiI ACGT 2 cut(s) 306, 1064
TaqI TCGA 4 cut(s) 45, 232, 342, 417
TasI AATT 2 cut(s) 266, 751
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 3 cut(s) 250, 600, 609
Tru1I TTAA 3 cut(s) 708, 891, 1145
Tru9I TTAA 3 cut(s) 708, 891, 1145
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 2 cut(s) 304, 379
TseI GCWGC 2 cut(s) 637, 905
Tsp45I GTSAC 2 cut(s) 304, 379
TspDTI ATGAA 4 cut(s) 17, 417, 530, 747
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 120
XapI RAATTY 1 cut(s) 751
XbaI TCTAGA 1 cut(s) 1111
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 2 cut(s) 1088, 1112
ZraI GACGTC 2 cut(s) 304, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.