FvH4_4g01420

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000449
Physical Location & Seq
Reverse (-)
1304280 .. 1307286
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01420.t1

Sequence Viewer

Length: 684 bp
ATGCATTTCGACGAGAGTTGCAGGGAGGGCGCAGTGTACTGCAATGGCGGAGTTCATTGGATAAGAGATAGAATGCAAGTTGGCTTGTGTTGGAGCAGGACAAGGATAGGTGACTCTTGGTCCAAAGATACTTGGATAAGAAATGATTGTGATGTGTTGCACTACTTTGATGTAGGTGAAGAACAATTTCGACTTGCCCCTGCTACTCCTCCTCCTGTCCCCTTGGTTGCCAAAGACCTTAGCTATGACATTAATTATGGTTGGCCGAGATTTGATCGTATATGTTTTGGGGACTGCGGTGGCCGTTTGTATTTGATTGAGAGTTTTCAGTATTGCAAGACTCGATTTGAGGTCATGGAGATGGAGAGGGACTACTCTGGCTGGCTTGTTAAGTATCGTGTTGATCTTAATCCGCTAGTCGCGGCTTATCCTGGAGAGGATTGGGATGCTTGTGTTGTCTTGGGCCTTTCTCAAGAGGATAAGACAGATAATGGGGTTGAGGATACTTCAACTGATCTTTTGTTGCACCTCCCTGGTAAGATCATATCCTATAATCTGAGGAATGAGACATTCAAGACATCTGCTGAGTTAGGCAATGAGGAACTTTTTCAAGCTTTCGGTGATAATCATGGTATTGAAGAGGCTGTTACTTTTCCTTATATGGAGACTCTGGCTTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

228

Amino Acids

26.11

Weight (kDa)

4.59

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 422
AciI CCGC 4 cut(s) 48, 297, 413, 422
AcoI YGGCCR 2 cut(s) 263, 301
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 4 cut(s) 510, 574, 611, 638
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 2 cut(s) 430, 532
AluBI AGCT 2 cut(s) 243, 614
AluI AGCT 2 cut(s) 243, 614
Alw26I GTCTC 2 cut(s) 560, 659
AoxI GGCC 3 cut(s) 263, 301, 463
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 2 cut(s) 186, 606
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 120, 463
AsuHPI GGTGA 3 cut(s) 122, 188, 632
AvaII GGWCC 1 cut(s) 120
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 2 cut(s) 432, 534
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 560, 659
BfaI CTAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 432, 534
Bme18I GGWCC 1 cut(s) 120
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 120, 463
BmrFI CCNGG 2 cut(s) 432, 534
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 222, 532
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse3DI GCAATG 2 cut(s) 49, 601
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 2 cut(s) 432, 534
BseDI CCNNGG 2 cut(s) 222, 532
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 408
BseMI GCAATG 2 cut(s) 49, 601
BseMII CTCAG 2 cut(s) 548, 576
BseRI GAGGAG 2 cut(s) 198, 201
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 3 cut(s) 265, 303, 465
BslFI GGGAC 3 cut(s) 203, 305, 383
BsmAI GTCTC 2 cut(s) 560, 659
BsmFI GGGAC 3 cut(s) 203, 305, 383
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 3 cut(s) 265, 303, 465
Bsp143I GATC 4 cut(s) 274, 403, 514, 540
BspACI CCGC 4 cut(s) 48, 297, 413, 422
BspANI GGCC 3 cut(s) 265, 303, 465
BspCNI CTCAG 2 cut(s) 549, 577
BspFNI CGCG 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 49, 601
BssECI CCNNGG 2 cut(s) 222, 532
BssMI GATC 4 cut(s) 274, 403, 514, 540
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 432, 534
Bst6I CTCTTC 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 3 cut(s) 239, 557, 585
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 277, 406, 517, 543
BstMAI GTCTC 2 cut(s) 560, 659
BstMBI GATC 4 cut(s) 274, 403, 514, 540
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 2 cut(s) 432, 534
BstSCI CCNGG 2 cut(s) 430, 532
BstUI CGCG 1 cut(s) 422
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 3 cut(s) 265, 303, 465
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 120, 463
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 355, 629
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 239, 557, 585
DpnI GATC 4 cut(s) 276, 405, 516, 542
DpnII GATC 4 cut(s) 274, 403, 514, 540
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 263, 301
Eam1104I CTCTTC 1 cut(s) 633
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 633
EciI GGCGGA 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 430, 532
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 358, 632
FaqI GGGAC 3 cut(s) 203, 305, 383
FatI CATG 2 cut(s) 354, 628
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 453
HaeIII GGCC 3 cut(s) 265, 303, 465
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 358, 632
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 3 cut(s) 113, 340, 667
HphI GGTGA 3 cut(s) 122, 188, 632
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 558
Hpy188III TCNNGA 2 cut(s) 473, 574
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 14
HpyCH4V TGCA 7 cut(s) 4, 21, 42, 76, 160, 336, 526
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 3 cut(s) 239, 557, 585
Hsp92II CATG 2 cut(s) 358, 632
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 4 cut(s) 274, 403, 514, 540
LmnI GCTCC 1 cut(s) 93
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 110, 646
MalI GATC 4 cut(s) 276, 405, 516, 542
MboI GATC 4 cut(s) 274, 403, 514, 540
MboII GAAGA 2 cut(s) 191, 650
MluCI AATT 2 cut(s) 185, 253
MlyI GAGTC 3 cut(s) 107, 334, 661
MmeI TCCRAC 1 cut(s) 71
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 186, 606
MseI TTAA 3 cut(s) 252, 390, 408
MslI CAYNNNNRTG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 432, 534
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 2 cut(s) 432, 534
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 4 cut(s) 274, 403, 514, 540
NlaIII CATG 2 cut(s) 358, 632
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 78
PdmI GAANNNNTTC 2 cut(s) 186, 606
PfoI TCCNGGA 1 cut(s) 430
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 3 cut(s) 107, 334, 661
PpsI GAGTC 3 cut(s) 107, 334, 661
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 430, 532
PspGI CCWGG 2 cut(s) 430, 532
PspPI GGNCC 2 cut(s) 120, 463
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 3 cut(s) 252, 390, 408
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 4 cut(s) 274, 403, 514, 540
Sau96I GGNCC 2 cut(s) 120, 463
SchI GAGTC 3 cut(s) 107, 334, 661
ScrFI CCNGG 2 cut(s) 432, 534
SetI ASST 7 cut(s) 112, 178, 240, 245, 354, 531, 616
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
Sse9I AATT 2 cut(s) 185, 253
SsiI CCGC 4 cut(s) 48, 297, 413, 422
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 430, 532
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 3 cut(s) 9, 190, 343
TasI AATT 2 cut(s) 185, 253
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 252, 390, 408
Tru9I TTAA 3 cut(s) 252, 390, 408
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 120
VspI ATTAAT 1 cut(s) 252
XmnI GAANNNNTTC 2 cut(s) 186, 606
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.