FvH4_6g31140

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000449
Physical Location & Seq
Forward (+)
24316014 .. 24316907
894 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31140.t1

Sequence Viewer

Length: 894 bp
ATGTCTACTACTGTGCTCTACGCTTTGGCTTTCGATCCTTCTCAATCGCCTCATTACAAGCTGGTCTGCGTCACTGACTCCGGGGACTATGATGCTGGGGGGCATCATGAAATAGAGATATATTCATCTGAGACAAGAGAGTGGAAGCGTCTCAAGACTCCTTACTTCCCCAGCCCCTCTGACGAGGGCATGGACTACGATTCCATACAGAGTGCCATGCACTTTGACTGGAAGGATAGGATAGGTGCCGTCTACTACAACGGCGCAGTTCATTGGATTCGAAGGAGAAGCAAAGCAGGCTTCCTGTTTGCCACATTTGATGATGGTAGAATTGAATTCACAAGAGAGGAAACTGACGTGATGCACTACTTTGACATAAGCCAAGAGCGTTTCCTGGTCATGCCTGCTACCACCCCTGTCCCCTCAGTGGTCAAAAACATTCCACTCGAGAATACCTCTGGCTACTGGGAACCAACTACATGGCCGAAATTGGCTCAGAGATATTTTGGGGAGAGCAGTGGGCGTTTGTACCTGATTGAGACTTTTGAGCATTGTTTGACCCAATTTGATGTGATGGAGATGGAGAGGGAATACTCTGGCTGGTTGGTCAAGTATCAGGTGGATCTTAATCCGCTTCTCGCAGCTTTTACTGGACAAGATTGTAGTGCTTTTGTTGTCTTGTGCCTTTCTCAAGAGGAGGAAACAGATTATGAGGTTGAGGACACTTCAACTCATCTCTTGTTGCACCTGTCTGGTAAGGTCATATCTTATAATCTTAGGAGTAAAACCTTCAGGACATCTGTTGAGTTAGTCAACAAGGAACTAGCTTTAGGTAATCATCTATATCTAGAGGATGTTGCTCATCCTTACATGGAGACTTTAGCTTGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

298

Amino Acids

34.28

Weight (kDa)

4.86

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 2 cut(s) 5, 252
AciI CCGC 1 cut(s) 632
AclWI GGATC 2 cut(s) 29, 630
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 775
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 2 cut(s) 335, 729
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 4 cut(s) 61, 644, 827, 884
AluI AGCT 4 cut(s) 61, 644, 827, 884
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 4 cut(s) 125, 155, 533, 869
AlwI GGATC 2 cut(s) 29, 630
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 1 cut(s) 335
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 446
BanI GGYRCC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 653
BccI CCATC 3 cut(s) 317, 568, 574
BceAI ACGGC 2 cut(s) 233, 277
BciT130I CCWGG 1 cut(s) 395
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 4 cut(s) 125, 155, 533, 869
BfaI CTAG 2 cut(s) 824, 848
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
Bme1390I CCNGG 2 cut(s) 82, 395
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 247, 471
BmrFI CCNGG 2 cut(s) 82, 395
BmrI ACTGGG 1 cut(s) 475
BmsI GCATC 3 cut(s) 82, 112, 351
BmuI ACTGGG 1 cut(s) 475
BplI GAGNNNNNCTC 2 cut(s) 440, 472
Bpu14I TTCGAA 1 cut(s) 280
BpuEI CTTGAG 2 cut(s) 137, 675
BpuMI CCSGG 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 3 cut(s) 233, 470, 655
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 859, 862
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMII CTCAG 3 cut(s) 120, 438, 509
BseNI ACTGG 3 cut(s) 233, 470, 655
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 1 cut(s) 653
BseYI CCCAGC 2 cut(s) 95, 170
BshFI GGCC 1 cut(s) 484
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 98, 404
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 4 cut(s) 125, 155, 533, 869
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 2 cut(s) 98, 404
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 34, 622
BspACI CCGC 1 cut(s) 632
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 3 cut(s) 121, 437, 508
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 247, 471
BspPI GGATC 2 cut(s) 29, 630
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 245
BsrI ACTGG 3 cut(s) 233, 470, 655
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 34, 622
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 2 cut(s) 298, 405
BstDEI CTNAG 4 cut(s) 129, 424, 495, 776
BstF5I GGATG 2 cut(s) 859, 862
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 37, 625
BstMAI GTCTC 4 cut(s) 125, 155, 533, 869
BstMBI GATC 2 cut(s) 34, 622
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 80, 393
BstV1I GCAGC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 1 cut(s) 484
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 2 cut(s) 859, 862
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 3 cut(s) 72, 432, 523
Cac8I GCNNGC 2 cut(s) 298, 405
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 266
CseI GACGC 2 cut(s) 58, 137
Csp6I GTAC 1 cut(s) 529
CviAII CATG 6 cut(s) 107, 190, 217, 400, 480, 871
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 4 cut(s) 129, 424, 495, 776
DpnI GATC 2 cut(s) 36, 624
DpnII GATC 2 cut(s) 34, 622
EaeI YGGCCR 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 775
Eco88I CYCGRG 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 393
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 6 cut(s) 110, 193, 220, 403, 483, 874
FaqI GGGAC 2 cut(s) 98, 404
FatI CATG 6 cut(s) 106, 189, 216, 399, 479, 870
FblI GTMKAC 2 cut(s) 5, 252
Fnu4HI GCNGC 1 cut(s) 642
FokI GGATG 2 cut(s) 849, 866
Fsp4HI GCNGC 1 cut(s) 642
FspBI CTAG 2 cut(s) 824, 848
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 642
GsaI CCCAGC 2 cut(s) 99, 174
HaeIII GGCC 1 cut(s) 484
HapII CCGG 1 cut(s) 81
HgaI GACGC 2 cut(s) 58, 137
HhaI GCGC 1 cut(s) 266
Hin1II CATG 6 cut(s) 110, 193, 220, 403, 483, 874
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 4 cut(s) 77, 157, 200, 277
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 3 cut(s) 6, 253, 814
Hpy188I TCNGA 3 cut(s) 130, 181, 498
Hpy188III TCNNGA 6 cut(s) 107, 154, 448, 692, 793, 848
Hpy8I GTNNAC 3 cut(s) 6, 253, 814
HpyAV CCTTC 4 cut(s) 48, 226, 276, 799
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 220, 364, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 4 cut(s) 129, 424, 495, 776
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 6 cut(s) 110, 193, 220, 403, 483, 874
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 34, 622
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 3 cut(s) 82, 112, 351
MaeI CTAG 2 cut(s) 824, 848
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 36, 624
MboI GATC 2 cut(s) 34, 622
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 330, 335, 488, 563
MlyI GAGTC 2 cut(s) 71, 151
MseI TTAA 1 cut(s) 627
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 82, 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 297
NciI CCSGG 1 cut(s) 82
NdeII GATC 2 cut(s) 34, 622
NlaIII CATG 6 cut(s) 110, 193, 220, 403, 483, 874
NlaIV GGNNCC 2 cut(s) 247, 471
NmuCI GTSAC 1 cut(s) 70
NspV TTCGAA 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 446
PagI TCATGA 1 cut(s) 106
PfeI GAWTC 2 cut(s) 200, 277
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 2 cut(s) 71, 151
PpsI GAGTC 2 cut(s) 71, 151
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 2 cut(s) 95, 170
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 247, 471
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 2 cut(s) 34, 622
SchI GAGTC 2 cut(s) 71, 151
ScrFI CCNGG 2 cut(s) 82, 395
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 3 cut(s) 82, 112, 351
Sfr274I CTCGAG 1 cut(s) 446
SfuI TTCGAA 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 446
SmlI CTYRAG 3 cut(s) 152, 446, 690
SmoI CTYRAG 3 cut(s) 152, 446, 690
Sse9I AATT 4 cut(s) 330, 335, 488, 563
SsiI CCGC 1 cut(s) 632
SspMI CTAG 2 cut(s) 824, 848
StyD4I CCNGG 2 cut(s) 80, 393
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 33, 280, 447
TasI AATT 4 cut(s) 330, 335, 488, 563
TfiI GAWTC 2 cut(s) 200, 277
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 3 cut(s) 79, 432, 523
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 114, 123, 260
TspRI CASTG 3 cut(s) 79, 432, 523
XapI RAATTY 1 cut(s) 335
XbaI TCTAGA 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 446
XmiI GTMKAC 2 cut(s) 5, 252
XspI CTAG 2 cut(s) 824, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.