Rh4BG017600

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Forward (+)
2762230 .. 2763090
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG017600.1

Sequence Viewer

Length: 861 bp
ATGGCGAAAAGAAAAGAGAGAAACATGTCATCCTCAGCAGCAGAAGCTGTAGCCAATATCGAAGAGCTCCTTACTCAGATCCTTGTGTCGCTGCCATTACGATCACTTGCTCGTTTCAAGTGCGTCTCCACGCATTGGCTCTCTCTCATCTCCGACCTCCGCACCCTCAAAAACCCCAAGATATTGGCTTTCTTCTCTAGCAAAATCCAAGACAAGTGCTTCAAGTCCATTCCTCTTGGTAACCATGAAATCTCACCTGGGTGGAATCCCTTCAAAACCCTTAACAATTCCGTCCCTGATGGATCCAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCCATATTCCTATATTTGGAGAACAAAGGAAACATCATCCCGTATATGTTGTTAATCCAACAACCAACCAATTCCGGGCTGTTTCCTCTCCAAGGGTTGGGGAATATATGGACAGATTAGCTTTTGTACGGTATGCTTTGGCTTTTGACCCTTCCAAATCACCTCATTACAAGGTGATCTGTGTGACTAACTCGGTGCCCACCATTTATCATTATGTGGAACGGGAAGGCGAGCACCACAAAATAGACATATATTCGTCTGAGACTGAAAACTGGAAGCATCTAAATATTCCTTTCTTCCAAAGCCCCTCTGACAGGCACAGGCACTATAGTTTAAAGATGGTGGCCATGCACTTTGATCGCAGGAGCAGGGAAGGCGCCATATACTGCAACGGCGCAGTTCATTGGATAAGAGAGACAGGGGAAGCAAGATTTTCATTCTGCTTCTTACCAGGTGGTAGGTTTGAATTCGAAAGAAAGGAAACTGATGTGCTGCACTGCACTACTTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

286

Amino Acids

33.01

Weight (kDa)

9.33

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 103 - 217 2.3e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 541, 722
AccB7I CCANNNNNTGG 2 cut(s) 135, 443
AciI CCGC 1 cut(s) 160
AclWI GGATC 3 cut(s) 73, 297, 310
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 723
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 7 cut(s) 135, 312, 362, 421, 438, 443, 660
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 4 cut(s) 118, 223, 274, 812
AjnI CCWGG 2 cut(s) 256, 796
AleI CACNNNNGTG 1 cut(s) 259
AluBI AGCT 3 cut(s) 47, 67, 467
AluI AGCT 3 cut(s) 47, 67, 467
Alw21I GWGCWC 2 cut(s) 69, 582
Alw26I GTCTC 3 cut(s) 130, 602, 755
AlwI GGATC 3 cut(s) 73, 297, 310
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 2 cut(s) 334, 690
ApeKI GCWGC 3 cut(s) 38, 91, 838
ApoI RAATTY 1 cut(s) 812
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 725, 743
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 246, 498, 532
AsuII TTCGAA 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 546
BalI TGGCCA 1 cut(s) 692
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 541, 722
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 2 cut(s) 69, 582
BbvCI CCTCAGC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 50, 78, 825
BccI CCATC 2 cut(s) 293, 679
BceAI ACGGC 1 cut(s) 754
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BciT130I CCWGG 2 cut(s) 258, 798
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 130, 602, 755
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 48, 673
BfoI RGCGCY 1 cut(s) 726
BisI GCNGC 3 cut(s) 39, 92, 839
BlsI GCNGC 3 cut(s) 40, 93, 840
Bme1390I CCNGG 3 cut(s) 258, 422, 798
BmiI GGNNCC 3 cut(s) 304, 543, 724
BmrFI CCNGG 3 cut(s) 258, 422, 798
BmsI GCATC 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 816
BpuMI CCSGG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 723
BsaJI CCNNGG 2 cut(s) 257, 437
Bsc4I CCNNNNNNNGG 7 cut(s) 135, 312, 362, 421, 438, 443, 660
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 2 cut(s) 258, 798
BseDI CCNNGG 2 cut(s) 257, 437
BseGI GGATG 2 cut(s) 29, 382
BseLI CCNNNNNNNGG 7 cut(s) 135, 312, 362, 421, 438, 443, 660
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 3 cut(s) 48, 89, 597
BseNI ACTGG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 3 cut(s) 50, 78, 825
BsgI GTGCAG 2 cut(s) 824, 829
BshFI GGCC 2 cut(s) 336, 692
BshNI GGYRCC 2 cut(s) 541, 722
BsiHKAI GWGCWC 2 cut(s) 69, 582
BsiSI CCGG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 7 cut(s) 135, 312, 362, 421, 438, 443, 660
BsmAI GTCTC 3 cut(s) 130, 602, 755
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 336, 692
Bsp119I TTCGAA 1 cut(s) 816
Bsp1286I GDGCHC 3 cut(s) 69, 546, 582
Bsp143I GATC 5 cut(s) 78, 101, 302, 522, 703
BspACI CCGC 1 cut(s) 160
BspANI GGCC 2 cut(s) 336, 692
BspCNI CTCAG 3 cut(s) 47, 88, 598
BspLI GGNNCC 3 cut(s) 304, 543, 724
BspPI GGATC 3 cut(s) 73, 297, 310
BspQI GCTCTTC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 816
BspT107I GGYRCC 2 cut(s) 541, 722
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 257, 437
BssMI GATC 5 cut(s) 78, 101, 302, 522, 703
BssNI GRCGYC 1 cut(s) 723
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 258, 798
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 1 cut(s) 57
BstACI GRCGYC 1 cut(s) 723
BstBI TTCGAA 1 cut(s) 816
BstC8I GCNNGC 1 cut(s) 578
BstDEI CTNAG 3 cut(s) 34, 75, 606
BstEII GGTNACC 1 cut(s) 239
BstENI CCTNNNNNAGG 2 cut(s) 436, 658
BstF5I GGATG 2 cut(s) 29, 382
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 2 cut(s) 725, 743
BstKTI GATC 5 cut(s) 81, 104, 305, 525, 706
BstMAI GTCTC 3 cut(s) 130, 602, 755
BstMBI GATC 5 cut(s) 78, 101, 302, 522, 703
BstMWI GCNNNNNNNGC 2 cut(s) 44, 720
BstNI CCWGG 2 cut(s) 258, 798
BstNSI RCATGY 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 256, 420, 796
BstSFI CTRYAG 2 cut(s) 48, 673
BstSLI GKGCMC 1 cut(s) 546
BstV1I GCAGC 3 cut(s) 50, 78, 825
BstX2I RGATCY 2 cut(s) 78, 302
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 2 cut(s) 78, 302
BsuRI GGCC 2 cut(s) 336, 692
BtsCI GGATG 2 cut(s) 29, 382
BtsI GCAGTG 1 cut(s) 841
BtsIMutI CAGTG 1 cut(s) 841
Cac8I GCNNGC 1 cut(s) 578
CaiI CAGNNNCTG 1 cut(s) 47
CfoI GCGC 2 cut(s) 725, 743
CseI GACGC 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 796
Csp6I GTAC 1 cut(s) 473
CviAII CATG 3 cut(s) 25, 245, 694
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 3 cut(s) 34, 75, 606
DinI GGCGCC 1 cut(s) 724
DpnI GATC 5 cut(s) 80, 103, 304, 524, 705
DpnII GATC 5 cut(s) 78, 101, 302, 522, 703
DraI TTTAAA 1 cut(s) 681
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 437
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 305
Eco91I GGTNACC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 67
EcoNI CCTNNNNNAGG 2 cut(s) 436, 658
EcoO65I GGTNACC 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 812
EcoRII CCWGG 2 cut(s) 256, 796
EcoT14I CCWWGG 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 69
EgeI GGCGCC 1 cut(s) 724
EheI GGCGCC 1 cut(s) 724
ErhI CCWWGG 1 cut(s) 437
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 3 cut(s) 28, 248, 697
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 24, 244, 693
Fnu4HI GCNGC 3 cut(s) 39, 92, 839
FokI GGATG 2 cut(s) 16, 369
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 39, 92, 839
FspBI CTAG 1 cut(s) 198
GlaI GCGC 2 cut(s) 724, 742
GluI GCNGC 3 cut(s) 39, 92, 839
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 2 cut(s) 336, 692
HapII CCGG 1 cut(s) 421
HgaI GACGC 1 cut(s) 112
HhaI GCGC 2 cut(s) 725, 743
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 3 cut(s) 28, 248, 697
Hin6I GCGC 2 cut(s) 723, 741
HinP1I GCGC 2 cut(s) 723, 741
HinfI GANTC 2 cut(s) 265, 316
HpaII CCGG 1 cut(s) 421
HphI GGTGA 3 cut(s) 246, 498, 532
Hpy188I TCNGA 4 cut(s) 78, 154, 607, 658
HpyAV CCTTC 4 cut(s) 280, 507, 566, 713
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4V TGCA 5 cut(s) 330, 697, 735, 841, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 720
HpyF3I CTNAG 3 cut(s) 34, 75, 606
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 3 cut(s) 28, 248, 697
HspAI GCGC 2 cut(s) 723, 741
KasI GGCGCC 1 cut(s) 722
Kzo9I GATC 5 cut(s) 78, 101, 302, 522, 703
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 72, 711
Lsp1109I GCAGC 3 cut(s) 50, 78, 825
LweI GCATC 1 cut(s) 634
MabI ACCWGGT 1 cut(s) 796
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 239, 529
MalI GATC 5 cut(s) 80, 103, 304, 524, 705
MboI GATC 5 cut(s) 78, 101, 302, 522, 703
MboII GAAGA 4 cut(s) 74, 184, 311, 634
MflI RGATCY 2 cut(s) 78, 302
MhlI GDGCHC 3 cut(s) 69, 546, 582
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 3 cut(s) 286, 416, 812
MluNI TGGCCA 1 cut(s) 692
Mly113I GGCGCC 1 cut(s) 723
MmeI TCCRAC 2 cut(s) 177, 428
MnlI CCTC 9 cut(s) 43, 167, 176, 243, 306, 347, 442, 519, 664
Mox20I TGGCCA 1 cut(s) 692
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 692
MseI TTAA 3 cut(s) 282, 399, 680
MslI CAYNNNNRTG 1 cut(s) 259
Msp20I TGGCCA 1 cut(s) 692
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 3 cut(s) 258, 422, 798
MvaI CCWGG 2 cut(s) 258, 798
MwoI GCNNNNNNNGC 2 cut(s) 44, 720
NarI GGCGCC 1 cut(s) 723
NciI CCSGG 1 cut(s) 422
NdeII GATC 5 cut(s) 78, 101, 302, 522, 703
NlaIII CATG 3 cut(s) 28, 248, 697
NlaIV GGNNCC 3 cut(s) 304, 543, 724
NmuCI GTSAC 1 cut(s) 529
NspI RCATGY 1 cut(s) 28
NspV TTCGAA 1 cut(s) 816
OliI CACNNNNGTG 1 cut(s) 259
PciI ACATGT 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 2 cut(s) 265, 316
PflMI CCANNNNNTGG 2 cut(s) 135, 443
PkrI GCNGC 3 cut(s) 40, 93, 840
PluTI GGCGCC 1 cut(s) 726
PscI ACATGT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 256, 796
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 2 cut(s) 256, 796
PspN4I GGNNCC 3 cut(s) 304, 543, 724
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 2 cut(s) 78, 302
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 259
SacI GAGCTC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 282, 399, 680
SatI GCNGC 3 cut(s) 39, 92, 839
Sau3AI GATC 5 cut(s) 78, 101, 302, 522, 703
ScrFI CCNGG 3 cut(s) 258, 422, 798
SduI GDGCHC 3 cut(s) 69, 546, 582
SetI ASST 9 cut(s) 49, 69, 159, 259, 469, 511, 522, 802, 809
SexAI ACCWGGT 1 cut(s) 796
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 2 cut(s) 48, 673
SfoI GGCGCC 1 cut(s) 724
SfuI TTCGAA 1 cut(s) 816
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 3 cut(s) 286, 416, 812
SsiI CCGC 1 cut(s) 160
SspDI GGCGCC 1 cut(s) 722
SspI AATATT 1 cut(s) 634
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 256, 420, 796
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 60, 816
TasI AATT 3 cut(s) 286, 416, 812
TfiI GAWTC 2 cut(s) 265, 316
Tru1I TTAA 3 cut(s) 282, 399, 680
Tru9I TTAA 3 cut(s) 282, 399, 680
TscAI CASTG 1 cut(s) 848
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 3 cut(s) 38, 91, 838
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 3 cut(s) 261, 737, 771
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 848
Van91I CCANNNNNTGG 2 cut(s) 135, 443
XagI CCTNNNNNAGG 2 cut(s) 436, 658
XapI RAATTY 1 cut(s) 812
XceI RCATGY 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.