Rorug02G0485300

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000449
Physical Location & Seq
Reverse (-)
61532974 .. 61534400
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0485300.1

Sequence Viewer

Length: 813 bp
ATGATGATGCAAATGCTAGTTCATCAAATGATCTTCATTTTGCTGTTATTCATATGCCGCGCCAGTACTGCTGCACCACAGACGGCAAAGCCTAGTTGCCTAGAGAAGTGTGGAAATGTTATCATCCCGTACCCTTTCGGGATTGGACCTTATGAAGGTTGTTACTATGACGAATGGTTTCAGATCGACTGCAACAAATCTACCGAGTGGAAGCCTTTCTTGAGGAGTACCAAATTGGAGGTGCTGAATATATCTACCGGAGGATGGCTTCAGGTGTACAGCCCTGTTACATCCTTCTGCAAGGGAAATAATAGTATCCCAGCGGCGGATTTAAGGGACAGCTTAAAGTTCAGCCCTCTCGCCTACTCCAAGGAGATTATGAGCAAGGTTTCTGTGACACTAGACTGGAGCATAAACAACCACACTCGGCCATTTGATTTTGACAGTTCGATTGTTTTTTTTAACGAGTCTTCTGACTCTGAGCGGTATCAAGAATATTATTACTTCCCGGAGCTAGCCAACCCGGCTTGCTTTGTTTACCGTTCTTCTCAACAAGAAAATTGGTCAGTAATTAATTGTTCCTGCCCCTGGGGCTACGAGGGAAATCCGTATCTCGGGCTATATTCTTGTCAAGACATTAATGAATGCCTGGATGATCGCCCCCGATGCTTTGGCAACACCAAGTGCGTGAACGAGTATGGTTGGTACCGATGTGAGGATGACCGGAGAAAGGCTGGATTGATCCTTGCCGCAGGTAGAGAATATAATTCATATTACAAATTGTTAATGCAAATAGTAGTCTTGCGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

270

Amino Acids

31.25

Weight (kDa)

5.35

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 33 - 87 3.9e-12 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 743
Acc65I GGTACC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 705
AccBSI CCGCTC 1 cut(s) 484
AccII CGCG 1 cut(s) 60
AciI CCGC 5 cut(s) 58, 323, 326, 484, 750
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 684
AfaI GTAC 5 cut(s) 67, 131, 229, 278, 707
AfiI CCNNNNNNNGG 7 cut(s) 155, 264, 325, 588, 614, 715, 730
AjnI CCWGG 2 cut(s) 587, 648
AluBI AGCT 2 cut(s) 342, 514
AluI AGCT 2 cut(s) 342, 514
AlwI GGATC 1 cut(s) 736
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 71
AseI ATTAAT 2 cut(s) 573, 639
Asp700I GAANNNNTTC 2 cut(s) 177, 215
Asp718I GGTACC 1 cut(s) 705
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 2 cut(s) 509, 524
AsuNHI GCTAGC 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 1 cut(s) 146
BaeI ACNNNNGTAYC 2 cut(s) 697, 730
BanI GGYRCC 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 2 cut(s) 589, 650
BciVI GTATCC 1 cut(s) 326
BcnI CCSGG 2 cut(s) 509, 524
BfaI CTAG 5 cut(s) 17, 93, 101, 401, 515
BfuAI ACCTGC 1 cut(s) 743
BfuI GTATCC 1 cut(s) 326
BglI GCCNNNNNGGC 2 cut(s) 524, 591
BisI GCNGC 4 cut(s) 58, 72, 324, 750
BlsI GCNGC 4 cut(s) 59, 73, 325, 751
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 4 cut(s) 509, 524, 589, 650
Bme18I GGWCC 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 707
BmrFI CCNGG 4 cut(s) 509, 524, 589, 650
BmsI GCATC 1 cut(s) 656
BmtI GCTAGC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 2 cut(s) 509, 524
BsaJI CCNNGG 3 cut(s) 369, 587, 588
BsaWI WCCGGW 2 cut(s) 257, 723
Bsc4I CCNNNNNNNGG 7 cut(s) 155, 264, 325, 588, 614, 715, 730
Bse1I ACTGG 2 cut(s) 63, 410
BseBI CCWGG 2 cut(s) 589, 650
BseDI CCNNGG 3 cut(s) 369, 587, 588
BseGI GGATG 5 cut(s) 123, 269, 290, 658, 724
BseLI CCNNNNNNNGG 7 cut(s) 155, 264, 325, 588, 614, 715, 730
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 63, 410
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 430
BshNI GGYRCC 1 cut(s) 705
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 4 cut(s) 258, 509, 524, 724
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 7 cut(s) 155, 264, 325, 588, 614, 715, 730
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 614
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 4 cut(s) 30, 183, 655, 741
BspACI CCGC 5 cut(s) 58, 323, 326, 484, 750
BspANI GGCC 1 cut(s) 430
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 707
BspMI ACCTGC 1 cut(s) 743
BspOI GCTAGC 1 cut(s) 518
BspPI GGATC 1 cut(s) 736
BspT107I GGYRCC 1 cut(s) 705
BsrBI CCGCTC 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 276
BsrI ACTGG 2 cut(s) 63, 410
BssECI CCNNGG 3 cut(s) 369, 587, 588
BssMI GATC 4 cut(s) 30, 183, 655, 741
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 589, 650
Bst4CI ACNGT 2 cut(s) 446, 542
BstAUI TGTACA 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 516, 529
BstDEI CTNAG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 5 cut(s) 123, 269, 290, 658, 724
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 4 cut(s) 33, 186, 658, 744
BstMBI GATC 4 cut(s) 30, 183, 655, 741
BstMWI GCNNNNNNNGC 4 cut(s) 68, 524, 591, 666
BstNI CCWGG 2 cut(s) 589, 650
BstSCI CCNGG 4 cut(s) 507, 522, 587, 648
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 462
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 430
BtsCI GGATG 5 cut(s) 123, 269, 290, 658, 724
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 516, 529
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 5 cut(s) 66, 130, 228, 277, 706
CviQI GTAC 5 cut(s) 66, 130, 228, 277, 706
DdeI CTNAG 1 cut(s) 480
DpnI GATC 4 cut(s) 32, 185, 657, 743
DpnII GATC 4 cut(s) 30, 183, 655, 741
DraIII CACNNNGTG 1 cut(s) 684
EaeI YGGCCR 1 cut(s) 428
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 614
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 587, 648
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 350
FauNDI CATATG 1 cut(s) 53
Fnu4HI GCNGC 4 cut(s) 58, 72, 324, 750
FokI GGATG 5 cut(s) 110, 276, 277, 665, 731
Fsp4HI GCNGC 4 cut(s) 58, 72, 324, 750
FspBI CTAG 5 cut(s) 17, 93, 101, 401, 515
GlaI GCGC 1 cut(s) 61
GluI GCNGC 4 cut(s) 58, 72, 324, 750
GsaI CCCAGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 427
HaeIII GGCC 1 cut(s) 430
HapII CCGG 4 cut(s) 258, 509, 524, 724
HhaI GCGC 1 cut(s) 62
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 2 cut(s) 467, 476
HpaII CCGG 4 cut(s) 258, 509, 524, 724
Hpy166II GTNNAC 3 cut(s) 277, 538, 691
Hpy188I TCNGA 3 cut(s) 183, 475, 481
Hpy188III TCNNGA 4 cut(s) 139, 220, 491, 632
Hpy8I GTNNAC 3 cut(s) 277, 538, 691
HpyAV CCTTC 2 cut(s) 149, 304
HpyCH4III ACNGT 2 cut(s) 446, 542
HpyCH4V TGCA 5 cut(s) 10, 74, 192, 300, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 524, 591, 666
HpyF3I CTNAG 1 cut(s) 480
HspAI GCGC 1 cut(s) 60
KpnI GGTACC 1 cut(s) 709
Kzo9I GATC 4 cut(s) 30, 183, 655, 741
LmnI GCTCC 2 cut(s) 408, 511
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 656
MaeI CTAG 5 cut(s) 17, 93, 101, 401, 515
MaeIII GTNAC 3 cut(s) 161, 286, 394
MalI GATC 4 cut(s) 32, 185, 657, 743
MbiI CCGCTC 1 cut(s) 484
MboI GATC 4 cut(s) 30, 183, 655, 741
MboII GAAGA 3 cut(s) 25, 462, 537
MluCI AATT 6 cut(s) 233, 559, 570, 574, 766, 779
MlyI GAGTC 2 cut(s) 470, 476
MnlI CCTC 6 cut(s) 216, 232, 254, 366, 592, 709
MroXI GAANNNNTTC 2 cut(s) 177, 215
MseI TTAA 6 cut(s) 332, 344, 462, 573, 639, 785
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 4 cut(s) 258, 509, 524, 724
MspR9I CCNGG 4 cut(s) 509, 524, 589, 650
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 2 cut(s) 589, 650
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 68, 524, 591, 666
NciI CCSGG 2 cut(s) 509, 524
NdeI CATATG 1 cut(s) 53
NdeII GATC 4 cut(s) 30, 183, 655, 741
NheI GCTAGC 1 cut(s) 514
NlaIV GGNNCC 1 cut(s) 707
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 394
PasI CCCWGGG 1 cut(s) 588
PctI GAATGC 1 cut(s) 650
PdmI GAANNNNTTC 2 cut(s) 177, 215
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 4 cut(s) 59, 73, 325, 751
PleI GAGTC 2 cut(s) 470, 475
PpsI GAGTC 2 cut(s) 470, 475
PshBI ATTAAT 2 cut(s) 573, 639
Psp6I CCWGG 2 cut(s) 587, 648
PspFI CCCAGC 1 cut(s) 319
PspGI CCWGG 2 cut(s) 587, 648
PspN4I GGNNCC 1 cut(s) 707
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 5 cut(s) 67, 131, 229, 278, 707
RsaNI GTAC 5 cut(s) 66, 130, 228, 277, 706
SaqAI TTAA 6 cut(s) 332, 344, 462, 573, 639, 785
SatI GCNGC 4 cut(s) 58, 72, 324, 750
Sau3AI GATC 4 cut(s) 30, 183, 655, 741
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 2 cut(s) 470, 476
ScrFI CCNGG 4 cut(s) 509, 524, 589, 650
SetI ASST 8 cut(s) 151, 160, 243, 276, 344, 390, 516, 757
SfaNI GCATC 1 cut(s) 656
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 6 cut(s) 233, 559, 570, 574, 766, 779
SsiI CCGC 5 cut(s) 58, 323, 326, 484, 750
SspI AATATT 1 cut(s) 497
SspMI CTAG 5 cut(s) 17, 93, 101, 401, 515
StyD4I CCNGG 4 cut(s) 507, 522, 587, 648
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 446, 542
TaqI TCGA 2 cut(s) 186, 449
TasI AATT 6 cut(s) 233, 559, 570, 574, 766, 779
TatI WGTACW 2 cut(s) 65, 276
TauI GCSGC 3 cut(s) 60, 326, 752
Tru1I TTAA 6 cut(s) 332, 344, 462, 573, 639, 785
Tru9I TTAA 6 cut(s) 332, 344, 462, 573, 639, 785
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 6 cut(s) 11, 25, 40, 168, 657, 759
TspGWI ACGGA 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 146
VspI ATTAAT 2 cut(s) 573, 639
XagI CCTNNNNNAGG 1 cut(s) 153
XmnI GAANNNNTTC 2 cut(s) 177, 215
XspI CTAG 5 cut(s) 17, 93, 101, 401, 515
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.