Rmu_sc0006767.1_g000007

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006767.1
OG0000449
Physical Location & Seq
Reverse (-)
19844 .. 21139
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006767.1_g000007.1.cds

Sequence Viewer

Length: 1296 bp
atgtcatcgtttcacagcgattcctcaggagcagcagaagccgtagccaatatcgaagatctcctaactcagatccttgtgtcggtgccattacgatcacttgctcgtttcaagtgcgtctccacgcattggctctctctcatctccgacctccacaccgtcaagaaccccaagatctcgactttcttccctattaaaatccaagacgagtcctacaagtccgtccctcttggtaacagtcaaatcccatcttgttggaatcccctcaaaatccttaacaattcaatccctgatggatccaagttgaggattcttcagtcctgcaatggcctccttctctgcctctgcgagacaacggaagaaagaagacatgatgtcgtatacgtttttaatcccacaaccaaccaattccgggctatttcttctccaagggttagggaaaacatgtccttatctgcttttacacattatgctttggcttttgatccttgcaaatcacctcattacaaggtgatctgcgtgagtaacttcttctattgttatgacagggggcaccaccaaatagatatacattcatctgagactggagagtggaagcatctcgatgctcctttcttcacaagccccttgcactttaacaggatcatggaagaaggcgccgtatactgcaacggcgcagttcactggataagacacgtagggggattcttgtcattcagtgatgctaggaatgaattcataagacacgaagctgatgtgctgcactactttgacataggccaagaacgtctgggactcgtgtccgctacccctcctatccctttggttgtcagaaacattccgttaaaggattccggtaagtctcccactgaatggccgacatttgatcaaagatattttggggagtctggtggccatttgtatttaattgagacttataagcattgtaagacccaatttgatgtgatggagatggagagggactactctggctggtttgtcaagtatcatgttgaacttaatcagtcattcacagctcttcctagttcgaatgcttttgtcgtcttgggcctttctcaagagaaggaaaagcataataaggaggattcttcagctgatcttttgttgcatatgccaggtaaggtcatatcttataatctggggaataagaccatcaagacatctgttgttgagttggccaataaaaaacttttttttcatgtagatagtcgattctttcgtgatgaggttgttatgtatccttacatggagagtttagcttgtgtgggacgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

431

Amino Acids

49.15

Weight (kDa)

6.6

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 939, 1155
AccB1I GGYRCC 3 cut(s) 85, 552, 656
AccB7I CCANNNNNTGG 2 cut(s) 129, 873
AccI GTMKAC 2 cut(s) 381, 663
AciI CCGC 1 cut(s) 804
AclWI GGATC 5 cut(s) 67, 291, 304, 479, 650
AcoI YGGCCR 3 cut(s) 875, 913, 1197
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 2 cut(s) 299, 1095
AcyI GRCGYC 1 cut(s) 657
AfiI CCNNNNNNNGG 5 cut(s) 82, 129, 306, 412, 873
AflIII ACRYGT 2 cut(s) 444, 694
AgsI TTSAA 3 cut(s) 112, 285, 1016
AhdI GACNNNNNGTC 1 cut(s) 374
AjnI CCWGG 1 cut(s) 1135
AluBI AGCT 4 cut(s) 752, 1037, 1115, 1280
AluI AGCT 4 cut(s) 752, 1037, 1115, 1280
Alw26I GTCTC 5 cut(s) 124, 344, 575, 867, 926
AlwI GGATC 5 cut(s) 67, 291, 304, 479, 650
AoxI GGCC 6 cut(s) 328, 778, 875, 913, 1069, 1197
ApeKI GCWGC 2 cut(s) 32, 760
ApoI RAATTY 1 cut(s) 734
Asp700I GAANNNNTTC 1 cut(s) 734
AspLEI GCGC 2 cut(s) 659, 677
AspS9I GGNCC 1 cut(s) 1069
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 489, 523
AsuII TTCGAA 1 cut(s) 1049
AxyI CCTNAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 555
BalI TGGCCA 2 cut(s) 915, 1199
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 3 cut(s) 85, 552, 656
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 44, 747
BccI CCATC 5 cut(s) 256, 287, 961, 967, 1181
BceAI ACGGC 3 cut(s) 26, 644, 688
BciT130I CCWGG 1 cut(s) 1137
BciVI GTATCC 1 cut(s) 1269
BclI TGATCA 1 cut(s) 886
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 5 cut(s) 124, 344, 575, 867, 926
BfaI CTAG 2 cut(s) 726, 1044
BfoI RGCGCY 1 cut(s) 660
BfuI GTATCC 1 cut(s) 1269
BglII AGATCT 2 cut(s) 58, 174
BisI GCNGC 2 cut(s) 33, 761
BlsI GCNGC 2 cut(s) 34, 762
Bme1390I CCNGG 2 cut(s) 413, 1137
BmeRI GACNNNNNGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 1069
BmiI GGNNCC 4 cut(s) 87, 298, 554, 658
BmrFI CCNGG 2 cut(s) 413, 1137
BmsI GCATC 3 cut(s) 595, 607, 712
BoxI GACNNNNGTC 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 1049
BpuEI CTTGAG 1 cut(s) 1062
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 1 cut(s) 428
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 129, 306, 412, 873
Bse1I ACTGG 2 cut(s) 589, 689
Bse21I CCTNAGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 1137
BseDI CCNNGG 1 cut(s) 428
BseLI CCNNNNNNNGG 5 cut(s) 82, 129, 306, 412, 873
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 3 cut(s) 39, 83, 570
BseNI ACTGG 2 cut(s) 589, 689
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 2 cut(s) 44, 747
BsgI GTGCAG 1 cut(s) 746
BshFI GGCC 6 cut(s) 330, 780, 877, 915, 1071, 1199
BshNI GGYRCC 3 cut(s) 85, 552, 656
BsiSI CCGG 2 cut(s) 412, 855
BslFI GGGAC 3 cut(s) 209, 807, 995
BslI CCNNNNNNNGG 5 cut(s) 82, 129, 306, 412, 873
BsmAI GTCTC 5 cut(s) 124, 344, 575, 867, 926
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 3 cut(s) 209, 807, 995
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 6 cut(s) 330, 780, 877, 915, 1071, 1199
Bsp119I TTCGAA 1 cut(s) 1049
Bsp1286I GDGCHC 1 cut(s) 555
BspACI CCGC 1 cut(s) 804
BspANI GGCC 6 cut(s) 330, 780, 877, 915, 1071, 1199
BspCNI CTCAG 3 cut(s) 38, 82, 571
BspLI GGNNCC 4 cut(s) 87, 298, 554, 658
BspPI GGATC 5 cut(s) 67, 291, 304, 479, 650
BspQI GCTCTTC 1 cut(s) 1044
BspT104I TTCGAA 1 cut(s) 1049
BspT107I GGYRCC 3 cut(s) 85, 552, 656
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 2 cut(s) 589, 689
BssECI CCNNGG 1 cut(s) 428
BssNAI GTATAC 2 cut(s) 382, 664
BssNI GRCGYC 1 cut(s) 657
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 428
Bst1107I GTATAC 2 cut(s) 382, 664
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 2 cut(s) 160, 239
Bst6I CTCTTC 1 cut(s) 1044
BstACI GRCGYC 1 cut(s) 657
BstBAI YACGTR 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 1049
BstDEI CTNAG 3 cut(s) 25, 69, 579
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 659, 677
BstMAI GTCTC 5 cut(s) 124, 344, 575, 867, 926
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 1 cut(s) 1137
BstNSI RCATGY 1 cut(s) 448
BstPAI GACNNNNGTC 1 cut(s) 799
BstSCI CCNGG 2 cut(s) 411, 1135
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 44, 747
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 4 cut(s) 58, 72, 174, 296
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 4 cut(s) 58, 72, 174, 296
BstZ17I GTATAC 2 cut(s) 382, 664
Bsu36I CCTNAGG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 1269
BsuRI GGCC 6 cut(s) 330, 780, 877, 915, 1071, 1199
BtsIMutI CAGTG 3 cut(s) 682, 724, 867
CfoI GCGC 2 cut(s) 659, 677
Cfr13I GGNCC 1 cut(s) 1069
CseI GACGC 1 cut(s) 106
CviAII CATG 6 cut(s) 371, 445, 646, 1010, 1220, 1267
DdeI CTNAG 3 cut(s) 25, 69, 579
DinI GGCGCC 1 cut(s) 658
DriI GACNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 3 cut(s) 875, 913, 1197
Eam1104I CTCTTC 1 cut(s) 1044
Eam1105I GACNNNNNGTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 1044
Eco130I CCWWGG 1 cut(s) 428
Eco57I CTGAAG 2 cut(s) 299, 1095
Eco81I CCTNAGG 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 428
EgeI GGCGCC 1 cut(s) 658
EheI GGCGCC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 6 cut(s) 374, 448, 649, 1013, 1223, 1270
FaqI GGGAC 3 cut(s) 209, 807, 995
FatI CATG 6 cut(s) 370, 444, 645, 1009, 1219, 1266
FauNDI CATATG 1 cut(s) 1131
FbaI TGATCA 1 cut(s) 886
FblI GTMKAC 2 cut(s) 381, 663
Fnu4HI GCNGC 2 cut(s) 33, 761
Fsp4HI GCNGC 2 cut(s) 33, 761
FspBI CTAG 2 cut(s) 726, 1044
GlaI GCGC 2 cut(s) 658, 676
GluI GCNGC 2 cut(s) 33, 761
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 6 cut(s) 330, 780, 877, 915, 1071, 1199
HapII CCGG 2 cut(s) 412, 855
HgaI GACGC 1 cut(s) 106
HhaI GCGC 2 cut(s) 659, 677
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 6 cut(s) 374, 448, 649, 1013, 1223, 1270
Hin6I GCGC 2 cut(s) 657, 675
HinP1I GCGC 2 cut(s) 657, 675
HpaII CCGG 2 cut(s) 412, 855
HphI GGTGA 2 cut(s) 489, 523
Hpy166II GTNNAC 3 cut(s) 382, 664, 682
Hpy188I TCNGA 4 cut(s) 72, 148, 580, 833
Hpy188III TCNNGA 7 cut(s) 27, 163, 178, 602, 1079, 1177, 1241
Hpy8I GTNNAC 3 cut(s) 382, 664, 682
HpyAV CCTTC 3 cut(s) 344, 647, 1078
HpyCH4III ACNGT 2 cut(s) 160, 239
HpyCH4IV ACGT 3 cut(s) 384, 696, 787
HpyCH4V TGCA 6 cut(s) 324, 492, 631, 669, 763, 1129
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 25, 69, 579
HpySE526I ACGT 3 cut(s) 384, 696, 787
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 6 cut(s) 374, 448, 649, 1013, 1223, 1270
HspAI GCGC 2 cut(s) 657, 675
KasI GGCGCC 1 cut(s) 656
Ksp22I TGATCA 1 cut(s) 886
LguI GCTCTTC 1 cut(s) 1044
LmnI GCTCC 2 cut(s) 29, 613
Lsp1109I GCAGC 2 cut(s) 44, 747
LweI GCATC 3 cut(s) 595, 607, 712
MaeI CTAG 2 cut(s) 726, 1044
MaeII ACGT 3 cut(s) 384, 696, 787
MaeIII GTNAC 2 cut(s) 233, 524
MflI RGATCY 4 cut(s) 58, 72, 174, 296
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 2 cut(s) 915, 1199
MluCI AATT 5 cut(s) 280, 407, 734, 927, 956
MluNI TGGCCA 2 cut(s) 915, 1199
Mly113I GGCGCC 1 cut(s) 657
MlyI GAGTC 3 cut(s) 218, 789, 914
MmeI TCCRAC 2 cut(s) 171, 236
Mox20I TGGCCA 2 cut(s) 915, 1199
MroXI GAANNNNTTC 1 cut(s) 734
MscI TGGCCA 2 cut(s) 915, 1199
MseI TTAA 7 cut(s) 195, 276, 390, 636, 845, 926, 1020
MslI CAYNNNNRTG 1 cut(s) 603
Msp20I TGGCCA 2 cut(s) 915, 1199
MspA1I CMGCKG 1 cut(s) 1115
MspI CCGG 2 cut(s) 412, 855
MspR9I CCNGG 2 cut(s) 413, 1137
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 1 cut(s) 1137
MwoI GCNNNNNNNGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 657
NciI CCSGG 1 cut(s) 413
NdeI CATATG 1 cut(s) 1131
NlaIII CATG 6 cut(s) 374, 448, 649, 1013, 1223, 1270
NlaIV GGNNCC 4 cut(s) 87, 298, 554, 658
NspI RCATGY 1 cut(s) 448
NspV TTCGAA 1 cut(s) 1049
PciI ACATGT 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 1044
PcsI WCGNNNNNNNCGW 1 cut(s) 1237
PctI GAATGC 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 7 cut(s) 20, 259, 310, 705, 851, 1106, 1233
PflMI CCANNNNNTGG 2 cut(s) 129, 873
PkrI GCNGC 2 cut(s) 34, 762
PleI GAGTC 3 cut(s) 217, 789, 913
PluTI GGCGCC 1 cut(s) 660
PpsI GAGTC 3 cut(s) 217, 789, 913
Ppu21I YACGTR 1 cut(s) 697
PscI ACATGT 1 cut(s) 444
PshAI GACNNNNGTC 1 cut(s) 799
PsiI TTATAA 2 cut(s) 939, 1155
Psp6I CCWGG 1 cut(s) 1135
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 4 cut(s) 87, 298, 554, 658
PspPI GGNCC 1 cut(s) 1069
PsuI RGATCY 4 cut(s) 58, 72, 174, 296
PvuII CAGCTG 1 cut(s) 1115
RseI CAYNNNNRTG 1 cut(s) 603
SapI GCTCTTC 1 cut(s) 1044
SaqAI TTAA 7 cut(s) 195, 276, 390, 636, 845, 926, 1020
SatI GCNGC 2 cut(s) 33, 761
Sau96I GGNCC 1 cut(s) 1069
SchI GAGTC 3 cut(s) 218, 789, 914
ScrFI CCNGG 2 cut(s) 413, 1137
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 3 cut(s) 595, 607, 712
SfoI GGCGCC 1 cut(s) 658
SfuI TTCGAA 1 cut(s) 1049
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
Sse9I AATT 5 cut(s) 280, 407, 734, 927, 956
SsiI CCGC 1 cut(s) 804
SspDI GGCGCC 1 cut(s) 656
SspMI CTAG 2 cut(s) 726, 1044
StyD4I CCNGG 2 cut(s) 411, 1135
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 160, 239
TaiI ACGT 3 cut(s) 387, 699, 790
TaqI TCGA 5 cut(s) 54, 179, 603, 1049, 1231
TasI AATT 5 cut(s) 280, 407, 734, 927, 956
TfiI GAWTC 7 cut(s) 20, 259, 310, 705, 851, 1106, 1233
Tru1I TTAA 7 cut(s) 195, 276, 390, 636, 845, 926, 1020
Tru9I TTAA 7 cut(s) 195, 276, 390, 636, 845, 926, 1020
TscAI CASTG 3 cut(s) 689, 724, 874
TseI GCWGC 2 cut(s) 32, 760
TspDTI ATGAA 4 cut(s) 564, 727, 747, 1208
TspGWI ACGGA 3 cut(s) 211, 371, 831
TspRI CASTG 3 cut(s) 689, 724, 874
Van91I CCANNNNNTGG 2 cut(s) 129, 873
XapI RAATTY 1 cut(s) 734
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 2 cut(s) 381, 663
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 2 cut(s) 726, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.