Rroxscaffold_2G00089440

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000449
Physical Location & Seq
Forward (+)
11445220 .. 11446244
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089440.1

Sequence Viewer

Length: 921 bp
ATGTCGGCTTTCTTCTCTAGCAAAACCGAAGCCGAGTCCTTCAAGTCCCTCCCACTTGTTAACCCTGAAATCCCATCTGGTTGGAATCCCTTCACAACTTTTAACGATTCCTTCAATGACGGCTCCAGGTTGAAGATTATTCAGTCCTGCAACGGCCTCTTTCTCTGCATTCCCAAGAGCAGAGAACATCGTGATTTCGTACCTAGAAAACAACATGATCTCGTATATGTTGTTAATCCAACAACCAACAAATTCTTGGCTCTTTCTTCTCCAACGGCTAGGTTTAGAAGTTTTGTACGTTATGCTTTGGCTTTTGAACCTTCCAAATCTCCTCATTACACGTTGGTCTGCGTGACTACCCACTATCGCTATTCCTTCGTGGAAGGTGAAGGTAAGTACCACAAAATACAAATATATTCGTCAAAGTCTGGAAAGTGGAAACATGTTAATGATATCCCTTTCTTCCAGAGCCTTTATGACCGATGCTGTCACCCTGATCTCAAGAAATGGCACATGGACTTCGACCGTAGGAGCAGGGAAGGCTCAGTATACTGCAACGGCGCAGTGAAGAACGTTTGCGGCTTGTGGCTGCTACTCCTCCTGTTCGATCCCTTGGTTGTAGAAAACATGCCGGTGGAGGATATTGGTTCTGACCTCAAGATTCCCATTGAGTTTCCGAGATTGGTTCATAGATACTTTGGGGAGTGCGGTGGCCGTTTGTACTTGATTGACATTTATAAGCATTGTAACACTCAATTTGATGTGATGGAGATGGAGAGGGACTACTCTGGTTGGTTTGTCAAGTACCATGTTGATCTCAAACCAGTAGTCATGGCTCTTCCTCAACATGATTTGAATCCTTTTGTTATTTTGTGCCTTTCTCGAGAAAAGGAAAAGGATGATGACGAGTTTGGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

306

Amino Acids

35.67

Weight (kDa)

7.16

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 42 - 153 4.3e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AccI GTMKAC 1 cut(s) 549
AciI CCGC 2 cut(s) 579, 708
AclI AACGTT 1 cut(s) 573
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 5 cut(s) 201, 297, 398, 722, 806
AflIII ACRYGT 2 cut(s) 339, 442
AgsI TTSAA 5 cut(s) 43, 115, 133, 317, 856
AjnI CCWGG 1 cut(s) 125
AlwI GGATC 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 882
AoxI GGCC 2 cut(s) 154, 712
ApeKI GCWGC 1 cut(s) 589
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 813, 845
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 398, 482
AvaI CYCGRG 1 cut(s) 882
BbvI GCAGC 1 cut(s) 576
BccI CCATC 3 cut(s) 82, 760, 766
BceAI ACGGC 5 cut(s) 136, 169, 291, 574, 699
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 3 cut(s) 18, 204, 279
BisI GCNGC 2 cut(s) 580, 590
BlsI GCNGC 2 cut(s) 581, 591
Bme1390I CCNGG 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 882
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 109
BpuEI CTTGAG 2 cut(s) 485, 641
BsaBI GATNNNNATC 1 cut(s) 855
BsaJI CCNNGG 1 cut(s) 612
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 824
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 1 cut(s) 904
BseJI GATNNNNATC 1 cut(s) 855
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 824
BseRI GAGGAG 2 cut(s) 321, 587
BseXI GCAGC 1 cut(s) 576
Bsh1285I CGRYCG 1 cut(s) 526
BshFI GGCC 2 cut(s) 156, 714
BsiEI CGRYCG 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 1 cut(s) 632
BslFI GGGAC 2 cut(s) 31, 794
BsmFI GGGAC 2 cut(s) 31, 794
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 2 cut(s) 156, 714
BsoBI CYCGRG 1 cut(s) 882
Bsp143I GATC 4 cut(s) 217, 496, 607, 814
BspACI CCGC 2 cut(s) 579, 708
BspANI GGCC 2 cut(s) 156, 714
BspCNI CTCAG 1 cut(s) 557
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 1 cut(s) 824
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 4 cut(s) 217, 496, 607, 814
BssNAI GTATAC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 612
Bst1107I GTATAC 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 1 cut(s) 843
BstDEI CTNAG 1 cut(s) 544
BstF5I GGATG 1 cut(s) 904
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 4 cut(s) 220, 499, 610, 817
BstMBI GATC 4 cut(s) 217, 496, 607, 814
BstMCI CGRYCG 1 cut(s) 526
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 2 cut(s) 446, 631
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 550
BsuRI GGCC 2 cut(s) 156, 714
BtsCI GGATG 1 cut(s) 904
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 570
CfoI GCGC 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 631
Csp6I GTAC 5 cut(s) 200, 296, 397, 721, 805
CviAII CATG 7 cut(s) 215, 443, 514, 628, 809, 832, 848
CviQI GTAC 5 cut(s) 200, 296, 397, 721, 805
DdeI CTNAG 1 cut(s) 544
DpnI GATC 4 cut(s) 219, 498, 609, 816
DpnII GATC 4 cut(s) 217, 496, 607, 814
EaeI YGGCCR 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 843
EarI CTCTTC 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 612
Eco32I GATATC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 882
EcoRII CCWGG 1 cut(s) 125
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 7 cut(s) 218, 446, 517, 631, 812, 835, 851
FaqI GGGAC 2 cut(s) 31, 794
FatI CATG 7 cut(s) 214, 442, 513, 627, 808, 831, 847
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 2 cut(s) 580, 590
FokI GGATG 1 cut(s) 911
Fsp4HI GCNGC 2 cut(s) 580, 590
FspBI CTAG 3 cut(s) 18, 204, 279
GlaI GCGC 1 cut(s) 562
GluI GCNGC 2 cut(s) 580, 590
GsuI CTGGAG 1 cut(s) 109
HaeIII GGCC 2 cut(s) 156, 714
HapII CCGG 1 cut(s) 632
HhaI GCGC 1 cut(s) 563
Hin1II CATG 7 cut(s) 218, 446, 517, 631, 812, 835, 851
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 5 cut(s) 35, 85, 107, 661, 856
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 1 cut(s) 632
HphI GGTGA 2 cut(s) 398, 482
Hpy166II GTNNAC 2 cut(s) 61, 550
Hpy188I TCNGA 2 cut(s) 652, 678
Hpy188III TCNNGA 7 cut(s) 191, 429, 466, 502, 658, 882, 884
Hpy8I GTNNAC 2 cut(s) 61, 550
HpyAV CCTTC 8 cut(s) 49, 100, 121, 330, 377, 383, 385, 533
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 3 cut(s) 298, 341, 573
HpyCH4V TGCA 3 cut(s) 150, 168, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 1 cut(s) 544
HpySE526I ACGT 3 cut(s) 298, 341, 573
Hsp92II CATG 7 cut(s) 218, 446, 517, 631, 812, 835, 851
HspAI GCGC 1 cut(s) 561
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 4 cut(s) 217, 496, 607, 814
LguI GCTCTTC 1 cut(s) 843
LmnI GCTCC 2 cut(s) 128, 531
Lsp1109I GCAGC 1 cut(s) 576
LweI GCATC 1 cut(s) 473
MaeI CTAG 3 cut(s) 18, 204, 279
MaeII ACGT 3 cut(s) 298, 341, 573
MaeIII GTNAC 3 cut(s) 352, 488, 746
MalI GATC 4 cut(s) 219, 498, 609, 816
MboI GATC 4 cut(s) 217, 496, 607, 814
MboII GAAGA 6 cut(s) 4, 145, 258, 454, 580, 830
MluCI AATT 2 cut(s) 251, 755
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 3 cut(s) 62, 263, 296
MnlI CCTC 8 cut(s) 59, 167, 342, 608, 631, 665, 771, 852
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 5 cut(s) 60, 102, 234, 447, 919
MslI CAYNNNNRTG 2 cut(s) 447, 632
MspI CCGG 1 cut(s) 632
MspR9I CCNGG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 540
NdeII GATC 4 cut(s) 217, 496, 607, 814
NlaIII CATG 7 cut(s) 218, 446, 517, 631, 812, 835, 851
NlaIV GGNNCC 1 cut(s) 124
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 2 cut(s) 352, 488
NspI RCATGY 2 cut(s) 446, 631
PaeR7I CTCGAG 1 cut(s) 882
PciI ACATGT 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 843
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 85, 107, 661, 856
PkrI GCNGC 2 cut(s) 581, 591
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PscI ACATGT 1 cut(s) 442
PsiI TTATAA 1 cut(s) 738
Psp1406I AACGTT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 124
RsaI GTAC 5 cut(s) 201, 297, 398, 722, 806
RsaNI GTAC 5 cut(s) 200, 296, 397, 721, 805
RseI CAYNNNNRTG 2 cut(s) 447, 632
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 5 cut(s) 60, 102, 234, 447, 919
SatI GCNGC 2 cut(s) 580, 590
Sau3AI GATC 4 cut(s) 217, 496, 607, 814
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 127
SfaNI GCATC 1 cut(s) 473
Sfr274I CTCGAG 1 cut(s) 882
SlaI CTCGAG 1 cut(s) 882
SmiMI CAYNNNNRTG 2 cut(s) 447, 632
SmlI CTYRAG 3 cut(s) 500, 656, 882
SmoI CTYRAG 3 cut(s) 500, 656, 882
Sse9I AATT 2 cut(s) 251, 755
SsiI CCGC 2 cut(s) 579, 708
SspMI CTAG 3 cut(s) 18, 204, 279
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 3 cut(s) 301, 344, 576
TaqI TCGA 3 cut(s) 522, 606, 883
TaqII GACCGA 1 cut(s) 495
TasI AATT 2 cut(s) 251, 755
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 4 cut(s) 85, 107, 661, 856
Tru1I TTAA 5 cut(s) 60, 102, 234, 447, 919
Tru9I TTAA 5 cut(s) 60, 102, 234, 447, 919
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 2 cut(s) 352, 488
TseI GCWGC 1 cut(s) 589
Tsp45I GTSAC 2 cut(s) 352, 488
TspDTI ATGAA 1 cut(s) 677
TspRI CASTG 1 cut(s) 570
XapI RAATTY 1 cut(s) 251
XceI RCATGY 2 cut(s) 446, 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 882
XmiI GTMKAC 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 3 cut(s) 18, 204, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.