Rh4DG015400

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000449
Physical Location & Seq
Reverse (-)
2392541 .. 2392972
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG015400.1

Sequence Viewer

Length: 432 bp
ATGGGTTCCTGCTCTATCGCTGATCCGTTTCAAGTGCGTCTCCACCACACCCTCCGAAACCCTAACTCCAAAATCTCAGCTTTCTTCTCTCCCCAAACCAATGAAGAAACCTTCGAGTCCATCCGTCTTGGTAACCATGAAATCCCACTTAGGTGCAATCCCTTCAAAACCCTCAACAATTCCGTCGCTGATGAATCAAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCCATATTCCTATATTTGGAGAACAAATAAAACATCATCCCGTATATGTTGTCAATCCCACAACCAACCAATTCCGGGCTCTTTCTTCTCCAACTGTCAAAGAAGACATGGACATAATGGCTTTTGTACGGTACGCTTTGGCTTTTGATCCTTCCACATCGCCTAGCTCATTACAAGGTGGTCTGCGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

143

Amino Acids

16.06

Weight (kDa)

7.01

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 17, 380
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 2 cut(s) 366, 371
AfiI CCNNNNNNNGG 2 cut(s) 254, 313
AgsI TTSAA 2 cut(s) 32, 166
AleI CACNNNNGTG 1 cut(s) 151
AluBI AGCT 2 cut(s) 80, 405
AluI AGCT 2 cut(s) 80, 405
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 17, 380
AoxI GGCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 314
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 348
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 348
BpuMI CCSGG 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 313
Bse3DI GCAATG 1 cut(s) 229
BseGI GGATG 2 cut(s) 120, 274
BseLI CCNNNNNNNGG 2 cut(s) 254, 313
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 254, 313
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 22, 385
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 2 cut(s) 17, 380
BsrDI GCAATG 1 cut(s) 229
BssMI GATC 2 cut(s) 22, 385
Bst4CI ACNGT 2 cut(s) 334, 369
BstDEI CTNAG 2 cut(s) 76, 149
BstEII GGTNACC 1 cut(s) 131
BstF5I GGATG 2 cut(s) 120, 274
BstKTI GATC 2 cut(s) 25, 388
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 22, 385
BstPI GGTNACC 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 228
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 120, 274
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 365, 370
CviAII CATG 2 cut(s) 137, 346
CviJI RGCY 6 cut(s) 80, 228, 317, 359, 380, 405
CviKI_1 RGCY 6 cut(s) 80, 228, 317, 359, 380, 405
CviQI GTAC 2 cut(s) 365, 370
DdeI CTNAG 2 cut(s) 76, 149
DpnI GATC 2 cut(s) 24, 387
DpnII GATC 2 cut(s) 22, 385
Eco24I GRGCYC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 131
EcoT38I GRGCYC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 2 cut(s) 140, 349
FaiI YATR 7 cut(s) 138, 243, 251, 283, 285, 347, 353
FatI CATG 2 cut(s) 136, 345
FokI GGATG 2 cut(s) 107, 261
FriOI GRGCYC 1 cut(s) 319
FspBI CTAG 1 cut(s) 402
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 313
HgaI GACGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 140, 349
HinfI GANTC 3 cut(s) 116, 194, 208
HpaII CCGG 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 121, 172, 399
HpyCH4III ACNGT 2 cut(s) 334, 369
HpyCH4V TGCA 2 cut(s) 156, 222
HpyF3I CTNAG 2 cut(s) 76, 149
Hsp92II CATG 2 cut(s) 140, 349
Kzo9I GATC 2 cut(s) 22, 385
LpnPI CCDG 3 cut(s) 22, 232, 326
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 24, 387
MboI GATC 2 cut(s) 22, 385
MboII GAAGA 5 cut(s) 76, 116, 203, 315, 353
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 2 cut(s) 178, 308
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 4 cut(s) 62, 182, 198, 239
MslI CAYNNNNRTG 1 cut(s) 151
MspI CCGG 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 314
NciI CCSGG 1 cut(s) 314
NdeII GATC 2 cut(s) 22, 385
NlaIII CATG 2 cut(s) 140, 349
NlaIV GGNNCC 1 cut(s) 7
OliI CACNNNNGTG 1 cut(s) 151
PfeI GAWTC 2 cut(s) 194, 208
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PspEI GGTNACC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 7
RsaI GTAC 2 cut(s) 366, 371
RsaNI GTAC 2 cut(s) 365, 370
RseI CAYNNNNRTG 1 cut(s) 151
Sau3AI GATC 2 cut(s) 22, 385
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 1 cut(s) 319
SetI ASST 5 cut(s) 82, 113, 155, 407, 418
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 2 cut(s) 178, 308
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 334, 369
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 178, 308
TfiI GAWTC 2 cut(s) 194, 208
TspDTI ATGAA 3 cut(s) 117, 153, 207
TspGWI ACGGA 3 cut(s) 15, 113, 172
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.