Rh6CG126300

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000449
Physical Location & Seq
Reverse (-)
15082053 .. 15085428
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG126300.1

Sequence Viewer

Length: 1035 bp
ATGTCATCGTTTCACAGCGATTCCTCAGGAGCAGCGGAAGCCGTAGCCAATATCGAAGATCTCCTGACTCAGATCCTTGTGTCGGTGCCATTACGATCACTTGCTCGTTTCAAGTGCGTCTCCACGCATTGGCTCTCTCTTATCTCCGACCTCCACACCGTCAAGAACCCCAAGATCTCGACTTTCTTCCCTATTAAAATCCAAGACGAGTCCTACAAGTCCGTCCCTCTTGGTAACAGTCAAATCCCATCTTGTTGGAATCCCCTCAAAATCCTTAACAATTCAATCCCTGATGGATCCAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCCTTCTCTGCCTTTGCGAGACAACGGAAGAAAGAAGACATGATGTCGTATACGTTTTTAATCCCACAACCAACCAATTCCGGGCTATTTCTTCTCCAAGGGTTAGGGAAAACATGTCCTTATCTGCTTTTACACATTATGCTTTGGCTTTTGATCCTTGCAAATCACCTCATTACAAGGTTATCTGCGTGAGTAACTTCTTCTATTGTTATGACAGGGGGCACCACCAAATAGATATATATTCATCTGAGACTGGAGAGTGGAAGCATCTCGATGCTCCTTTCTTCACAAGCCCCTTGCACTTTAACAGGATCATGGAAGAAGGCGCCGTATACTGCAACGGCGCAGTTCATTGGATAAGACACGTAGGGGGATTCTTGTCATTCAGTGATGCTAGGAATGAATTCATAAGACACGAAGCTGATGTGCTGCACTACTTTGACATAGGCCAAGAACGTCTGGGACTCGTGTCCGCTACCCCTCCTATCCCTTTGGTTGTCAGAAACATTCCGTTAAAGGATTCCGAATCTCTGAAGGCAACTCCGATAGACTATCTGATGACATATCCGATGGAATTTCTGAAGGCATCTCCGATGAAGTCTCTGAAGGCATTTCCGATGAAGTCTCTGAAGGCATCTCCAATGATGTCTCTTAAGGCATTTCCGACAAAGTCTCTGAAGGCATCTCGGATGAAGTCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

344

Amino Acids

38.88

Weight (kDa)

8.76

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 97 - 224 2.3e-07 F-box associated beta propeller domain
FBA_1 PF07734 99 - 271 7.7e-18 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 100 - 232 1.2e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 85, 552, 656
AccB7I CCANNNNNTGG 1 cut(s) 129
AccI GTMKAC 2 cut(s) 381, 663
AciI CCGC 2 cut(s) 35, 804
AclWI GGATC 5 cut(s) 67, 291, 304, 479, 650
AcsI RAATTY 2 cut(s) 734, 905
AcuI CTGAAG 6 cut(s) 299, 884, 932, 956, 980, 1028
AcyI GRCGYC 1 cut(s) 657
AfiI CCNNNNNNNGG 4 cut(s) 82, 129, 306, 412
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 2 cut(s) 444, 694
AgsI TTSAA 2 cut(s) 112, 285
AhdI GACNNNNNGTC 1 cut(s) 374
AluBI AGCT 1 cut(s) 752
AluI AGCT 1 cut(s) 752
Alw26I GTCTC 7 cut(s) 124, 344, 575, 936, 960, 984, 1008
AlwI GGATC 5 cut(s) 67, 291, 304, 479, 650
AoxI GGCC 2 cut(s) 328, 778
ApeKI GCWGC 2 cut(s) 32, 760
ApoI RAATTY 2 cut(s) 734, 905
Asp700I GAANNNNTTC 1 cut(s) 734
AspLEI GCGC 2 cut(s) 659, 677
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 489
AxyI CCTNAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 555
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 3 cut(s) 85, 552, 656
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 44, 747
BccI CCATC 3 cut(s) 256, 287, 895
BceAI ACGGC 3 cut(s) 26, 644, 688
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 7 cut(s) 124, 344, 575, 936, 960, 984, 1008
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 1031
BfoI RGCGCY 1 cut(s) 660
BfrI CTTAAG 1 cut(s) 983
BglII AGATCT 2 cut(s) 58, 174
BisI GCNGC 2 cut(s) 33, 761
BlsI GCNGC 2 cut(s) 34, 762
Bme1390I CCNGG 1 cut(s) 413
BmeRI GACNNNNNGTC 1 cut(s) 374
BmiI GGNNCC 4 cut(s) 87, 298, 554, 658
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 6 cut(s) 595, 607, 712, 926, 974, 1022
BoxI GACNNNNGTC 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 129, 306, 412
Bse1I ACTGG 1 cut(s) 589
Bse21I CCTNAGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 1 cut(s) 1026
BseLI CCNNNNNNNGG 4 cut(s) 82, 129, 306, 412
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 3 cut(s) 39, 83, 570
BseNI ACTGG 1 cut(s) 589
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 2 cut(s) 44, 747
BsgI GTGCAG 1 cut(s) 746
BshFI GGCC 2 cut(s) 330, 780
BshNI GGYRCC 3 cut(s) 85, 552, 656
BsiSI CCGG 1 cut(s) 412
BslFI GGGAC 2 cut(s) 209, 807
BslI CCNNNNNNNGG 4 cut(s) 82, 129, 306, 412
BsmAI GTCTC 7 cut(s) 124, 344, 575, 936, 960, 984, 1008
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 209, 807
BsnI GGCC 2 cut(s) 330, 780
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
BspACI CCGC 2 cut(s) 35, 804
BspANI GGCC 2 cut(s) 330, 780
BspCNI CTCAG 3 cut(s) 38, 82, 571
BspLI GGNNCC 4 cut(s) 87, 298, 554, 658
BspPI GGATC 5 cut(s) 67, 291, 304, 479, 650
BspT107I GGYRCC 3 cut(s) 85, 552, 656
BspTI CTTAAG 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
BssNAI GTATAC 2 cut(s) 382, 664
BssNI GRCGYC 1 cut(s) 657
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 428
Bst1107I GTATAC 2 cut(s) 382, 664
Bst2BI CACGAG 1 cut(s) 797
Bst4CI ACNGT 2 cut(s) 160, 239
BstACI GRCGYC 1 cut(s) 657
BstAFI CTTAAG 1 cut(s) 983
BstBAI YACGTR 1 cut(s) 697
BstDEI CTNAG 3 cut(s) 25, 69, 579
BstF5I GGATG 1 cut(s) 1026
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 2 cut(s) 659, 677
BstKTI GATC 7 cut(s) 61, 75, 98, 177, 299, 487, 645
BstMAI GTCTC 7 cut(s) 124, 344, 575, 936, 960, 984, 1008
BstMBI GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 448
BstPAI GACNNNNGTC 1 cut(s) 799
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 1 cut(s) 1031
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 44, 747
BstV2I GAAGAC 1 cut(s) 373
BstX2I RGATCY 4 cut(s) 58, 72, 174, 296
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 4 cut(s) 58, 72, 174, 296
BstZ17I GTATAC 2 cut(s) 382, 664
Bsu36I CCTNAGG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 330, 780
BtsCI GGATG 1 cut(s) 1026
BtsIMutI CAGTG 1 cut(s) 724
CfoI GCGC 2 cut(s) 659, 677
CseI GACGC 1 cut(s) 106
CviAII CATG 3 cut(s) 371, 445, 646
CviJI RGCY 9 cut(s) 41, 47, 133, 330, 416, 479, 624, 752, 780
CviKI_1 RGCY 9 cut(s) 41, 47, 133, 330, 416, 479, 624, 752, 780
DdeI CTNAG 3 cut(s) 25, 69, 579
DinI GGCGCC 1 cut(s) 658
DpnI GATC 7 cut(s) 60, 74, 97, 176, 298, 486, 644
DpnII GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
DriI GACNNNNNGTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 428
Eco57I CTGAAG 6 cut(s) 299, 884, 932, 956, 980, 1028
Eco81I CCTNAGG 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 734
EcoT14I CCWWGG 1 cut(s) 428
EgeI GGCGCC 1 cut(s) 658
EheI GGCGCC 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 3 cut(s) 374, 448, 649
FaqI GGGAC 2 cut(s) 209, 807
FatI CATG 3 cut(s) 370, 444, 645
FblI GTMKAC 2 cut(s) 381, 663
Fnu4HI GCNGC 2 cut(s) 33, 761
Fsp4HI GCNGC 2 cut(s) 33, 761
FspBI CTAG 1 cut(s) 726
GlaI GCGC 2 cut(s) 658, 676
GluI GCNGC 2 cut(s) 33, 761
GsuI CTGGAG 1 cut(s) 606
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 2 cut(s) 330, 780
HapII CCGG 1 cut(s) 412
HgaI GACGC 1 cut(s) 106
HhaI GCGC 2 cut(s) 659, 677
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 3 cut(s) 374, 448, 649
Hin6I GCGC 2 cut(s) 657, 675
HinP1I GCGC 2 cut(s) 657, 675
HinfI GANTC 9 cut(s) 20, 67, 209, 259, 310, 705, 795, 851, 857
HpaII CCGG 1 cut(s) 412
HphI GGTGA 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 382, 664
Hpy188III TCNNGA 5 cut(s) 27, 64, 163, 178, 602
Hpy8I GTNNAC 2 cut(s) 382, 664
HpyAV CCTTC 7 cut(s) 344, 647, 859, 907, 931, 955, 1003
HpyCH4III ACNGT 2 cut(s) 160, 239
HpyCH4IV ACGT 3 cut(s) 384, 696, 787
HpyCH4V TGCA 5 cut(s) 324, 492, 631, 669, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 25, 69, 579
HpySE526I ACGT 3 cut(s) 384, 696, 787
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 3 cut(s) 374, 448, 649
HspAI GCGC 2 cut(s) 657, 675
KasI GGCGCC 1 cut(s) 656
Kzo9I GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
LmnI GCTCC 2 cut(s) 29, 613
LpnPI CCDG 9 cut(s) 12, 77, 303, 334, 425, 532, 570, 625, 776
Lsp1109I GCAGC 2 cut(s) 44, 747
LweI GCATC 6 cut(s) 595, 607, 712, 926, 974, 1022
MaeI CTAG 1 cut(s) 726
MaeII ACGT 3 cut(s) 384, 696, 787
MaeIII GTNAC 2 cut(s) 233, 524
MalI GATC 7 cut(s) 60, 74, 97, 176, 298, 486, 644
MboI GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
MboII GAAGA 9 cut(s) 68, 178, 305, 371, 378, 414, 523, 607, 662
MflI RGATCY 4 cut(s) 58, 72, 174, 296
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 280, 407, 734, 905
Mly113I GGCGCC 1 cut(s) 657
MlyI GAGTC 3 cut(s) 61, 218, 789
MmeI TCCRAC 3 cut(s) 171, 236, 1019
MnlI CCTC 8 cut(s) 34, 161, 237, 275, 300, 341, 510, 822
MroXI GAANNNNTTC 1 cut(s) 734
MseI TTAA 6 cut(s) 195, 276, 390, 636, 845, 984
MslI CAYNNNNRTG 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 983
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 657
NciI CCSGG 1 cut(s) 413
NdeII GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
NlaIII CATG 3 cut(s) 374, 448, 649
NlaIV GGNNCC 4 cut(s) 87, 298, 554, 658
NspI RCATGY 1 cut(s) 448
PciI ACATGT 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 6 cut(s) 20, 259, 310, 705, 851, 857
PflFI GACNNNGTC 1 cut(s) 1000
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 2 cut(s) 34, 762
PleI GAGTC 3 cut(s) 61, 217, 789
PluTI GGCGCC 1 cut(s) 660
PpsI GAGTC 3 cut(s) 61, 217, 789
Ppu21I YACGTR 1 cut(s) 697
PscI ACATGT 1 cut(s) 444
PshAI GACNNNNGTC 1 cut(s) 799
PspN4I GGNNCC 4 cut(s) 87, 298, 554, 658
PsuI RGATCY 4 cut(s) 58, 72, 174, 296
PsyI GACNNNGTC 1 cut(s) 1000
RseI CAYNNNNRTG 1 cut(s) 603
SaqAI TTAA 6 cut(s) 195, 276, 390, 636, 845, 984
SatI GCNGC 2 cut(s) 33, 761
Sau3AI GATC 7 cut(s) 58, 72, 95, 174, 296, 484, 642
SchI GAGTC 3 cut(s) 61, 218, 789
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 555
SetI ASST 7 cut(s) 153, 387, 502, 513, 699, 754, 790
SfaNI GCATC 6 cut(s) 595, 607, 712, 926, 974, 1022
SfcI CTRYAG 1 cut(s) 1031
SfoI GGCGCC 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 983
SmoI CTYRAG 1 cut(s) 983
Sse9I AATT 4 cut(s) 280, 407, 734, 905
SsiI CCGC 2 cut(s) 35, 804
SspDI GGCGCC 1 cut(s) 656
SspMI CTAG 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 160, 239
TaiI ACGT 3 cut(s) 387, 699, 790
TaqI TCGA 3 cut(s) 54, 179, 603
TasI AATT 4 cut(s) 280, 407, 734, 905
TfiI GAWTC 6 cut(s) 20, 259, 310, 705, 851, 857
Tru1I TTAA 6 cut(s) 195, 276, 390, 636, 845, 984
Tru9I TTAA 6 cut(s) 195, 276, 390, 636, 845, 984
TscAI CASTG 1 cut(s) 724
TseI GCWGC 2 cut(s) 32, 760
TspDTI ATGAA 6 cut(s) 564, 671, 727, 747, 941, 965
TspGWI ACGGA 3 cut(s) 211, 371, 831
TspRI CASTG 1 cut(s) 724
Tth111I GACNNNGTC 1 cut(s) 1000
Van91I CCANNNNNTGG 1 cut(s) 129
Vha464I CTTAAG 1 cut(s) 983
XapI RAATTY 2 cut(s) 734, 905
XceI RCATGY 1 cut(s) 448
XmiI GTMKAC 2 cut(s) 381, 663
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.