Rh4DG017900

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000449
Physical Location & Seq
Forward (+)
2840619 .. 2850193
9575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG017900.1

Sequence Viewer

Length: 1053 bp
ATGGCGCAAACAAAAGAAAGGAGAATTCGATGCGATTCCTCATCAGCAGCAGAAACGGTGGCCGATGTCGAAGAGCTTCTCACAAAGATCCTTGTGTCTGTGCCACCTCGATCTCTGGTTCGTTTCAAGTGCGTCTCCAAGCACTGGCTCACTCTCATCTCCGACCCCGGATTCTTTCGCCGCCAGACACATCAAAAGTCGAAGATCTCCGGTTTCTTTTCTAGCAAAACCGAAGACGAGTTCTTCAAGTCCATTGCTCTTCGTGACCGTGAAATCCCATCTGGGAATCCCTTCAAAACTATTAATGATTCCTTCGCTGATGGATCCAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTCCTCTGCCATATTCCTATAGTAGACGTGCTTGGAGAAGGAAAACATCATCCCTTGTATGTTGTCAATCCAACAACCAACCAATTCCGGGCTCTTTCTTGTCCAAGCTCTGAGGCCTGGGACCCGTTCATGTTTGTACGTTATGCTTTGGCTTTTAATCCTTCCAAGTCGCCTCATTACAAGGTGATCTGCGTAAATAACTTCCCCTATTGTTATGATAGAGGCCACCACGAAATAGACATATATTCATCTGAGACCGGAGAGTGGAAGCGTCTTGAGGTTCCTTTCTTCCCAAGCCCCTCTGACGTGGGCAGACACCATGATTTCGTGCAGAAGGCCATGCACTTTGACTACAGGAGCAGGAAAGGCGCCGTATACTGCAACGGGGCAGTTCATTGGATAAGAGACAGAAGGGAAGCAATTTTTCCACTCCGCTTTTTTGGGGATGTATTCGCAGCTCTTCCTGATTCGAATAATGCTTTTGCTGTCTTTTGCCTCTGTCGCCCAGAGGAAAAAGATAATGAGGTTGAGGATTCTTCAACTGATGATGTGTTGTTGCTTATGCCTGGTAAGGTCATATCTTACAATCTTAGGAACAATACCTTCAAGACATCTGTTGAGTTTGCCAATAAGAAACTTTTTCTAGCTTTACATGATAATCCTTATTCCAGGGATGATGAAAATCATCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

350

Amino Acids

40.19

Weight (kDa)

7.62

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 60 8.8e-07 F-box domain
FBA_1 PF07734 109 - 255 7.3e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 2 cut(s) 384, 735
AciI CCGC 2 cut(s) 181, 793
AclWI GGATC 3 cut(s) 82, 318, 331
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 729
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 4 cut(s) 144, 333, 448, 624
AgsI TTSAA 5 cut(s) 127, 247, 295, 900, 967
AjiI CACGTC 2 cut(s) 388, 667
AjnI CCWGG 3 cut(s) 476, 925, 1028
AluBI AGCT 4 cut(s) 76, 468, 818, 1007
AluI AGCT 4 cut(s) 76, 468, 818, 1007
Alw26I GTCTC 3 cut(s) 139, 608, 759
AlwI GGATC 3 cut(s) 82, 318, 331
AoxI GGCC 5 cut(s) 60, 355, 474, 583, 696
ApeKI GCWGC 2 cut(s) 47, 815
ApoI RAATTY 1 cut(s) 24
AseI ATTAAT 1 cut(s) 303
Asp700I GAANNNNTTC 2 cut(s) 75, 290
AspLEI GCGC 2 cut(s) 7, 731
AspS9I GGNCC 1 cut(s) 481
AsuC2I CCSGG 2 cut(s) 168, 449
AsuHPI GGTGA 1 cut(s) 556
AsuII TTCGAA 1 cut(s) 830
AvaII GGWCC 1 cut(s) 481
BamHI GGATCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 59, 827
BccI CCATC 2 cut(s) 286, 314
BceAI ACGGC 1 cut(s) 716
BciT130I CCWGG 3 cut(s) 478, 927, 1030
BcnI CCSGG 2 cut(s) 168, 449
BcoDI GTCTC 3 cut(s) 139, 608, 759
BfaI CTAG 2 cut(s) 222, 1004
BfmI CTRYAG 2 cut(s) 378, 712
BfoI RGCGCY 1 cut(s) 732
BglII AGATCT 1 cut(s) 204
BisI GCNGC 3 cut(s) 48, 181, 816
BlsI GCNGC 3 cut(s) 49, 182, 817
Bme1390I CCNGG 5 cut(s) 168, 449, 478, 927, 1030
Bme18I GGWCC 1 cut(s) 481
BmgBI CACGTC 2 cut(s) 388, 667
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 5 cut(s) 325, 482, 483, 642, 730
BmrFI CCNGG 5 cut(s) 168, 449, 478, 927, 1030
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 830
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 2 cut(s) 168, 449
BsaBI GATNNNNATC 1 cut(s) 1041
BsaHI GRCGYC 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 3 cut(s) 166, 477, 1029
BsaWI WCCGGW 2 cut(s) 209, 617
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 333, 448, 624
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 2 cut(s) 252, 358
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 3 cut(s) 478, 927, 1030
BseDI CCNNGG 3 cut(s) 166, 477, 1029
BseGI GGATG 4 cut(s) 409, 811, 1039, 1045
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 4 cut(s) 144, 333, 448, 624
BseMI GCAATG 2 cut(s) 252, 358
BseMII CTCAG 2 cut(s) 462, 603
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 59, 827
BsgI GTGCAG 1 cut(s) 710
BshFI GGCC 5 cut(s) 62, 357, 476, 585, 698
BshNI GGYRCC 1 cut(s) 728
BsiSI CCGG 4 cut(s) 168, 210, 448, 618
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 4 cut(s) 144, 333, 448, 624
BsmAI GTCTC 3 cut(s) 139, 608, 759
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 5 cut(s) 62, 357, 476, 585, 698
Bso31I GGTCTC 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 830
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 5 cut(s) 87, 110, 204, 323, 546
BspACI CCGC 2 cut(s) 181, 793
BspANI GGCC 5 cut(s) 62, 357, 476, 585, 698
BspCNI CTCAG 2 cut(s) 463, 604
BspLI GGNNCC 5 cut(s) 325, 482, 483, 642, 730
BspPI GGATC 3 cut(s) 82, 318, 331
BspQI GCTCTTC 3 cut(s) 66, 264, 825
BspT104I TTCGAA 1 cut(s) 830
BspT107I GGYRCC 1 cut(s) 728
BspTNI GGTCTC 1 cut(s) 608
BsrDI GCAATG 2 cut(s) 252, 358
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 166, 477, 1029
BssMI GATC 5 cut(s) 87, 110, 204, 323, 546
BssNAI GTATAC 1 cut(s) 736
BssNI GRCGYC 1 cut(s) 729
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 3 cut(s) 478, 927, 1030
Bst4CI ACNGT 2 cut(s) 58, 269
Bst6I CTCTTC 4 cut(s) 66, 264, 365, 825
BstACI GRCGYC 1 cut(s) 729
BstBI TTCGAA 1 cut(s) 830
BstDEI CTNAG 3 cut(s) 471, 612, 950
BstF5I GGATG 4 cut(s) 409, 811, 1039, 1045
BstH2I RGCGCY 1 cut(s) 732
BstHHI GCGC 2 cut(s) 7, 731
BstKTI GATC 5 cut(s) 90, 113, 207, 326, 549
BstMAI GTCTC 3 cut(s) 139, 608, 759
BstMBI GATC 5 cut(s) 87, 110, 204, 323, 546
BstMWI GCNNNNNNNGC 2 cut(s) 726, 861
BstNI CCWGG 3 cut(s) 478, 927, 1030
BstSCI CCNGG 5 cut(s) 166, 447, 476, 925, 1028
BstSFI CTRYAG 2 cut(s) 378, 712
BstV1I GCAGC 2 cut(s) 59, 827
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 3 cut(s) 87, 204, 323
BstYI RGATCY 3 cut(s) 87, 204, 323
BstZ17I GTATAC 1 cut(s) 736
BsuRI GGCC 5 cut(s) 62, 357, 476, 585, 698
BtrI CACGTC 2 cut(s) 388, 667
BtsCI GGATG 4 cut(s) 409, 811, 1039, 1045
BtsIMutI CAGTG 1 cut(s) 142
CfoI GCGC 2 cut(s) 7, 731
Cfr13I GGNCC 1 cut(s) 481
CseI GACGC 2 cut(s) 121, 620
Csp6I GTAC 1 cut(s) 497
CviAII CATG 4 cut(s) 490, 680, 700, 1013
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 3 cut(s) 471, 612, 950
DinI GGCGCC 1 cut(s) 730
DpnI GATC 5 cut(s) 89, 112, 206, 325, 548
DpnII GATC 5 cut(s) 87, 110, 204, 323, 546
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 66, 264, 365, 825
EarI CTCTTC 4 cut(s) 66, 264, 365, 825
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 476, 925, 1028
EcoT38I GRGCYC 1 cut(s) 454
EgeI GGCGCC 1 cut(s) 730
EheI GGCGCC 1 cut(s) 730
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 493, 683, 703, 1016
FaqI GGGAC 1 cut(s) 494
FatI CATG 4 cut(s) 489, 679, 699, 1012
FblI GTMKAC 2 cut(s) 384, 735
Fnu4HI GCNGC 3 cut(s) 48, 181, 816
FokI GGATG 4 cut(s) 396, 818, 1032, 1046
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 3 cut(s) 48, 181, 816
FspBI CTAG 2 cut(s) 222, 1004
GlaI GCGC 2 cut(s) 6, 730
GluI GCNGC 3 cut(s) 48, 181, 816
HaeII RGCGCY 1 cut(s) 732
HaeIII GGCC 5 cut(s) 62, 357, 476, 585, 698
HapII CCGG 4 cut(s) 168, 210, 448, 618
HgaI GACGC 2 cut(s) 121, 620
HhaI GCGC 2 cut(s) 7, 731
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 4 cut(s) 493, 683, 703, 1016
Hin6I GCGC 2 cut(s) 5, 729
HinP1I GCGC 2 cut(s) 5, 729
HinfI GANTC 7 cut(s) 35, 171, 286, 308, 337, 827, 893
HpaII CCGG 4 cut(s) 168, 210, 448, 618
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 385, 736
Hpy188I TCNGA 4 cut(s) 163, 472, 613, 664
Hpy188III TCNNGA 4 cut(s) 263, 635, 824, 967
Hpy8I GTNNAC 2 cut(s) 385, 736
HpyAV CCTTC 7 cut(s) 301, 322, 392, 531, 688, 765, 973
HpyCH4III ACNGT 2 cut(s) 58, 269
HpyCH4IV ACGT 3 cut(s) 387, 499, 666
HpyCH4V TGCA 4 cut(s) 351, 691, 703, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 726, 861
HpyF3I CTNAG 3 cut(s) 471, 612, 950
HpySE526I ACGT 3 cut(s) 387, 499, 666
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 4 cut(s) 493, 683, 703, 1016
HspAI GCGC 2 cut(s) 5, 729
KasI GGCGCC 1 cut(s) 728
KflI GGGWCCC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 87, 110, 204, 323, 546
LguI GCTCTTC 3 cut(s) 66, 264, 825
LmnI GCTCC 1 cut(s) 717
Lsp1109I GCAGC 2 cut(s) 59, 827
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 222, 1004
MaeII ACGT 3 cut(s) 387, 499, 666
MaeIII GTNAC 1 cut(s) 263
MalI GATC 5 cut(s) 89, 112, 206, 325, 548
MboI GATC 5 cut(s) 87, 110, 204, 323, 546
MflI RGATCY 3 cut(s) 87, 204, 323
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 3 cut(s) 24, 443, 780
Mly113I GGCGCC 1 cut(s) 729
MmeI TCCRAC 2 cut(s) 186, 455
MroXI GAANNNNTTC 2 cut(s) 75, 290
MseI TTAA 2 cut(s) 303, 516
MspI CCGG 4 cut(s) 168, 210, 448, 618
MspR9I CCNGG 5 cut(s) 168, 449, 478, 927, 1030
MvaI CCWGG 3 cut(s) 478, 927, 1030
MwoI GCNNNNNNNGC 2 cut(s) 726, 861
NarI GGCGCC 1 cut(s) 729
NciI CCSGG 2 cut(s) 168, 449
NdeII GATC 5 cut(s) 87, 110, 204, 323, 546
NlaIII CATG 4 cut(s) 493, 683, 703, 1016
NlaIV GGNNCC 5 cut(s) 325, 482, 483, 642, 730
NmuCI GTSAC 1 cut(s) 263
NspV TTCGAA 1 cut(s) 830
PceI AGGCCT 1 cut(s) 476
PciSI GCTCTTC 3 cut(s) 66, 264, 825
PdmI GAANNNNTTC 2 cut(s) 75, 290
PfeI GAWTC 7 cut(s) 35, 171, 286, 308, 337, 827, 893
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 3 cut(s) 49, 182, 817
PluTI GGCGCC 1 cut(s) 732
PpuMI RGGWCCY 1 cut(s) 481
PshBI ATTAAT 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 3 cut(s) 476, 925, 1028
PspGI CCWGG 3 cut(s) 476, 925, 1028
PspN4I GGNNCC 5 cut(s) 325, 482, 483, 642, 730
PspPI GGNCC 1 cut(s) 481
PspPPI RGGWCCY 1 cut(s) 481
PsuI RGATCY 3 cut(s) 87, 204, 323
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SapI GCTCTTC 3 cut(s) 66, 264, 825
SaqAI TTAA 2 cut(s) 303, 516
SatI GCNGC 3 cut(s) 48, 181, 816
Sau3AI GATC 5 cut(s) 87, 110, 204, 323, 546
Sau96I GGNCC 1 cut(s) 481
ScrFI CCNGG 5 cut(s) 168, 449, 478, 927, 1030
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 2 cut(s) 378, 712
SfoI GGCGCC 1 cut(s) 730
SfuI TTCGAA 1 cut(s) 830
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 3 cut(s) 24, 443, 780
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 2 cut(s) 181, 793
SspDI GGCGCC 1 cut(s) 728
SspMI CTAG 2 cut(s) 222, 1004
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 5 cut(s) 166, 447, 476, 925, 1028
TaaI ACNGT 2 cut(s) 58, 269
TaiI ACGT 3 cut(s) 390, 502, 669
TaqI TCGA 5 cut(s) 28, 69, 109, 200, 830
TasI AATT 3 cut(s) 24, 443, 780
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 7 cut(s) 35, 171, 286, 308, 337, 827, 893
Tru1I TTAA 2 cut(s) 303, 516
Tru9I TTAA 2 cut(s) 303, 516
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 2 cut(s) 47, 815
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 4 cut(s) 478, 597, 743, 1053
TspGWI ACGGA 1 cut(s) 1038
TspRI CASTG 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 481
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 24
XmiI GTMKAC 2 cut(s) 384, 735
XmnI GAANNNNTTC 2 cut(s) 75, 290
XspI CTAG 2 cut(s) 222, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.