Rh4DG018000

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000449
Physical Location & Seq
Forward (+)
2853570 .. 2854269
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG018000.1

Sequence Viewer

Length: 468 bp
ATGTCATCCTCAGCAGCAGAAGCTGTAGCCAATATCGAAGAGCTCCTTACTCAGATCCTTGTGTCGCTGCCATTACGATCACTTGCTCGTTTCAAGTGCGTCTCCACGCATTGGCTCTCTCTCATCTCCGACCTCCGCACCCTCAAAAACCCCAAGATATCGGCTTTCTTCTCTAGCAAAATCCAAGACGAGTGCTTCAAGTCCATCCCTCTTGGTAACCATGAAATCCCACCTGGGTGGAATCCCTTCAAAACCCTTAACAATTCCGTCCCTGATGGATCCAAGTTGAGGATTCTTCAGTCCTGCAATGATAAGGTCATATCTTATAATCTGAGGAATAAGACCTTCAAGGCATCTGTTGTGGAGTTGGCCAATGAAGAACTTCTTCTTGCTATGGATGGTCGATTCTATAGGGATGAGGTTGTTATGTATCCTTACATGGAGGGTTTAGCTTGTGTGGAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

155

Amino Acids

17.48

Weight (kDa)

7.65

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 47 7.5e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 1 cut(s) 136
AclWI GGATC 3 cut(s) 49, 273, 286
AcoI YGGCCR 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 111, 288
AgsI TTSAA 4 cut(s) 94, 199, 250, 349
AjnI CCWGG 1 cut(s) 232
AleI CACNNNNGTG 1 cut(s) 235
AluBI AGCT 3 cut(s) 23, 43, 452
AluI AGCT 3 cut(s) 23, 43, 452
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 3 cut(s) 49, 273, 286
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 14, 67
Asp700I GAANNNNTTC 3 cut(s) 245, 381, 384
BalI TGGCCA 1 cut(s) 371
BamHI GGATCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 26, 54
BccI CCATC 3 cut(s) 212, 269, 392
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 2 cut(s) 24, 409
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 2 cut(s) 15, 68
BlsI GCNGC 2 cut(s) 16, 69
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 362
Bpu10I CCTNAGC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 288
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 4 cut(s) 5, 204, 403, 421
BseLI CCNNNNNNNGG 2 cut(s) 111, 288
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 3 cut(s) 24, 65, 323
BseXI GCAGC 2 cut(s) 26, 54
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 111, 288
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 3 cut(s) 54, 77, 278
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 3 cut(s) 23, 64, 324
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 3 cut(s) 49, 273, 286
BspQI GCTCTTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 3 cut(s) 54, 77, 278
Bst2UI CCWGG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 10, 51, 332
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 4 cut(s) 5, 204, 403, 421
BstKTI GATC 3 cut(s) 57, 80, 281
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 54, 77, 278
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 2 cut(s) 24, 409
BstV1I GCAGC 2 cut(s) 26, 54
BstX2I RGATCY 2 cut(s) 54, 278
BstXI CCANNNNNNTGG 1 cut(s) 237
BstYI RGATCY 2 cut(s) 54, 278
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 4 cut(s) 5, 204, 403, 421
CaiI CAGNNNCTG 1 cut(s) 23
CseI GACGC 1 cut(s) 88
CviAII CATG 2 cut(s) 221, 439
CviJI RGCY 7 cut(s) 23, 29, 43, 115, 164, 371, 452
CviKI_1 RGCY 7 cut(s) 23, 29, 43, 115, 164, 371, 452
DdeI CTNAG 3 cut(s) 10, 51, 332
DpnI GATC 3 cut(s) 56, 79, 280
DpnII GATC 3 cut(s) 54, 77, 278
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco32I GATATC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 281
Eco91I GGTNACC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 2 cut(s) 224, 442
FaiI YATR 7 cut(s) 222, 320, 327, 395, 411, 428, 440
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 369, 401
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 220, 438
Fnu4HI GCNGC 2 cut(s) 15, 68
FokI GGATG 3 cut(s) 191, 410, 428
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 15, 68
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 15, 68
HaeIII GGCC 1 cut(s) 371
HgaI GACGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 224, 442
HinfI GANTC 3 cut(s) 241, 292, 405
Hpy188I TCNGA 3 cut(s) 54, 130, 333
HpyAV CCTTC 2 cut(s) 256, 355
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 3 cut(s) 10, 51, 332
Hsp92II CATG 2 cut(s) 224, 442
Kzo9I GATC 3 cut(s) 54, 77, 278
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 4 cut(s) 219, 246, 285, 316
Lsp1109I GCAGC 2 cut(s) 26, 54
LweI GCATC 1 cut(s) 362
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 215
MalI GATC 3 cut(s) 56, 79, 280
MboI GATC 3 cut(s) 54, 77, 278
MboII GAAGA 5 cut(s) 50, 160, 287, 377, 389
MflI RGATCY 2 cut(s) 54, 278
MhlI GDGCHC 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 1 cut(s) 262
MluNI TGGCCA 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 8 cut(s) 19, 143, 152, 219, 282, 327, 412, 436
Mox20I TGGCCA 1 cut(s) 371
MroXI GAANNNNTTC 3 cut(s) 245, 381, 384
MscI TGGCCA 1 cut(s) 371
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 235
Msp20I TGGCCA 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 3 cut(s) 54, 77, 278
NlaIII CATG 2 cut(s) 224, 442
NlaIV GGNNCC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 33
PdmI GAANNNNTTC 3 cut(s) 245, 381, 384
PfeI GAWTC 3 cut(s) 241, 292, 405
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 16, 69
PsiI TTATAA 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 54, 278
RseI CAYNNNNRTG 1 cut(s) 235
SacI GAGCTC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 15, 68
Sau3AI GATC 3 cut(s) 54, 77, 278
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 25, 45, 135, 235, 318, 347, 423, 454
SfaNI GCATC 1 cut(s) 362
SfcI CTRYAG 2 cut(s) 24, 409
SmiMI CAYNNNNRTG 1 cut(s) 235
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 232
TaqI TCGA 2 cut(s) 36, 403
TasI AATT 1 cut(s) 262
TfiI GAWTC 3 cut(s) 241, 292, 405
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 2 cut(s) 14, 67
TspDTI ATGAA 2 cut(s) 237, 390
TspGWI ACGGA 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 111
XmnI GAANNNNTTC 3 cut(s) 245, 381, 384
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.