RLG00000010091

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000449
Physical Location & Seq
Forward (+)
62935402 .. 62936692
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010091

Sequence Viewer

Length: 1179 bp
ATGGCGCAAAGAAACGAAAGGAGAATTCACTGCGATTCCCCATCAGCAGCAGAAACGGTGGCCAATATCGAAGAGCTTCTGTCTCAGATACTTGTATTGGTTCCAGCCTTATCTCTGATCCGTTTCAAGTGCGTCTCCAGGCACTGGCTCACTCTCATCTCCGACCCTGCATTTTTTCGCCGCCACTTACATCAAAAGTCGAAGATCTCCGGCTTCTTTTCTAGCCAAACCGAAGACGAGTCCTTCAAGTCCATTGCCTTTAGTGACCGCGAAATCCCATCTGGGAATCCCTTCAAAACTATAAATGATTCCTTCGGTGATGGCTCCAGGTTGAAGATTATTCAATCCTGCAACGGCCTCTTCCTTCGCGTTCGCTACTCTAGGGATATTTCTCCTTTGCGTGGTGTCATAGATCATCCCGCATATGTTGTGAATCCCACAACCAACAAATTCTTGGCTCTTTATTCTCCAAGCGTTAAGAAAAATAAAAAATGTTATAGTTTTTTAGTACGTTATGCTCTGGCTTTTGACCCTTCCATATCACCTTCTTACAAGGTGGTCTGCGTGACTAACTACTCGTTTCGGGAGCAGTCCCACCACATAGACATCTATTCCTCTGAGACTCAAGAGTGGAAGGAGCTTCTCAGGGTTCCTTTCTTCCCCAGCTATCCCATGCACTTTGACCACAGGAGCACTGAAGGGGCAGTATACTATGAACAAAGTTTGCGACTCGTCGCTGCTGCTACTCCTGTTCCTGTGGCTGTAAGAGCTGATAGATATTTTGGCGAGTCTGGCGGCCATTTGTATTTGATTGAGTTTTACAAGCATTACGACCCCCAATTTGACATCATGGAGATGGAGAGGGACTACTCTTGCTGGTTTATCAAGCATCACGTTGATCTTAATCTGGTATTCGCAGCTCTTCCTAACACAAGTCCTTTTGTTGTCTTGTGCCTCTCTCCAGAGGAGGAAAAGGATGCGGAGGAGGAGGAGGATTCTTCATGTAACCTTTGGTTGCATATGCCTGGCAAAGTCATGTCTTATAATCTAAGGAATAAGACCTTCAAAACAATAGCGGAGCTGGCCAATAAGGAACTTTTTCTAGCTTTGGATAATGATCGATGCTCTCACATGGAGGCTGCTAACTATCCTTACATGGGGACTTTAGCTTGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

393

Amino Acids

45.1

Weight (kDa)

6.44

Isoelectric Point (pI)

69.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 71 - 241 1.1e-11 F-box associated beta propeller domain
FBA_1 PF07734 108 - 224 7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1044
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 708
AccII CGCG 2 cut(s) 270, 369
AciI CCGC 6 cut(s) 181, 268, 420, 795, 980, 1076
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 3 cut(s) 60, 796, 1083
AcsI RAATTY 2 cut(s) 24, 449
AcuI CTGAAG 1 cut(s) 717
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 3 cut(s) 144, 401, 1157
AgsI TTSAA 6 cut(s) 127, 247, 295, 334, 344, 1066
AjnI CCWGG 3 cut(s) 137, 326, 1024
AluBI AGCT 8 cut(s) 76, 640, 666, 770, 920, 1081, 1106, 1169
AluI AGCT 8 cut(s) 76, 640, 666, 770, 920, 1081, 1106, 1169
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 3 cut(s) 87, 139, 614
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 4 cut(s) 60, 355, 796, 1083
ApeKI GCWGC 5 cut(s) 47, 737, 740, 917, 1139
ApoI RAATTY 2 cut(s) 24, 449
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 3 cut(s) 75, 290, 1098
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 329, 534
BalI TGGCCA 2 cut(s) 62, 1085
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 695
BbvI GCAGC 5 cut(s) 59, 724, 727, 929, 1126
BccI CCATC 4 cut(s) 49, 286, 314, 850
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 3 cut(s) 139, 328, 1026
BcoDI GTCTC 3 cut(s) 87, 139, 614
BfaI CTAG 3 cut(s) 222, 381, 1103
BglII AGATCT 1 cut(s) 204
BisI GCNGC 7 cut(s) 48, 181, 738, 741, 796, 918, 1140
BlsI GCNGC 7 cut(s) 49, 182, 739, 742, 797, 919, 1141
Bme1390I CCNGG 3 cut(s) 139, 328, 1026
BmiI GGNNCC 3 cut(s) 102, 325, 651
BmrFI CCNGG 3 cut(s) 139, 328, 1026
BmsI GCATC 3 cut(s) 898, 967, 1112
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 3 cut(s) 121, 310, 945
BpuEI CTTGAG 1 cut(s) 609
Bsa29I ATCGAT 1 cut(s) 1120
BsaBI GATNNNNATC 2 cut(s) 903, 1116
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 401, 1157
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 2 cut(s) 903, 1116
BseBI CCWGG 3 cut(s) 139, 328, 1026
BseCI ATCGAT 1 cut(s) 1120
BseGI GGATG 2 cut(s) 415, 982
BseJI GATNNNNATC 2 cut(s) 903, 1116
BseLI CCNNNNNNNGG 3 cut(s) 144, 401, 1157
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 98, 609, 658
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 4 cut(s) 980, 998, 1001, 1004
BseXI GCAGC 5 cut(s) 59, 724, 727, 929, 1126
BseYI CCCAGC 1 cut(s) 662
Bsh1236I CGCG 2 cut(s) 270, 369
BshFI GGCC 4 cut(s) 62, 357, 798, 1085
BshVI ATCGAT 1 cut(s) 1120
BsiHKAI GWGCWC 1 cut(s) 695
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 3 cut(s) 577, 878, 1174
BslI CCNNNNNNNGG 3 cut(s) 144, 401, 1157
BsmAI GTCTC 3 cut(s) 87, 139, 614
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 3 cut(s) 577, 878, 1174
BsnI GGCC 4 cut(s) 62, 357, 798, 1085
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 5 cut(s) 117, 204, 412, 898, 1117
BspACI CCGC 6 cut(s) 181, 268, 420, 795, 980, 1076
BspANI GGCC 4 cut(s) 62, 357, 798, 1085
BspCNI CTCAG 3 cut(s) 97, 610, 657
BspDI ATCGAT 1 cut(s) 1120
BspFNI CGCG 2 cut(s) 270, 369
BspLI GGNNCC 3 cut(s) 102, 325, 651
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 2 cut(s) 66, 927
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 149
BssMI GATC 5 cut(s) 117, 204, 412, 898, 1117
BssNAI GTATAC 1 cut(s) 709
Bst1107I GTATAC 1 cut(s) 709
Bst2UI CCWGG 3 cut(s) 139, 328, 1026
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 3 cut(s) 66, 365, 927
BstC8I GCNNGC 1 cut(s) 1083
BstDEI CTNAG 4 cut(s) 84, 618, 644, 1049
BstF5I GGATG 2 cut(s) 415, 982
BstFNI CGCG 2 cut(s) 270, 369
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 120, 207, 415, 901, 1120
BstMAI GTCTC 3 cut(s) 87, 139, 614
BstMBI GATC 5 cut(s) 117, 204, 412, 898, 1117
BstMWI GCNNNNNNNGC 3 cut(s) 767, 792, 1082
BstNI CCWGG 3 cut(s) 139, 328, 1026
BstSCI CCNGG 3 cut(s) 137, 326, 1024
BstUI CGCG 2 cut(s) 270, 369
BstV1I GCAGC 5 cut(s) 59, 724, 727, 929, 1126
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BstZ17I GTATAC 1 cut(s) 709
Bsu15I ATCGAT 1 cut(s) 1120
BsuRI GGCC 4 cut(s) 62, 357, 798, 1085
BsuTUI ATCGAT 1 cut(s) 1120
BtsCI GGATG 2 cut(s) 415, 982
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 28, 142, 693
Cac8I GCNNGC 1 cut(s) 1083
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 1120
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 509
CviAII CATG 6 cut(s) 673, 850, 1002, 1036, 1132, 1156
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 4 cut(s) 84, 618, 644, 1049
DpnI GATC 5 cut(s) 119, 206, 414, 900, 1119
DpnII GATC 5 cut(s) 117, 204, 412, 898, 1117
EaeI YGGCCR 3 cut(s) 60, 796, 1083
Eam1104I CTCTTC 3 cut(s) 66, 365, 927
EarI CTCTTC 3 cut(s) 66, 365, 927
Eco57I CTGAAG 1 cut(s) 717
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 137, 326, 1024
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 6 cut(s) 676, 853, 1005, 1039, 1135, 1159
FaqI GGGAC 3 cut(s) 577, 878, 1174
FatI CATG 6 cut(s) 672, 849, 1001, 1035, 1131, 1155
FauI CCCGC 1 cut(s) 427
FauNDI CATATG 2 cut(s) 424, 1020
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 7 cut(s) 48, 181, 738, 741, 796, 918, 1140
FokI GGATG 2 cut(s) 402, 989
Fsp4HI GCNGC 7 cut(s) 48, 181, 738, 741, 796, 918, 1140
FspBI CTAG 3 cut(s) 222, 381, 1103
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 48, 181, 738, 741, 796, 918, 1140
GsaI CCCAGC 1 cut(s) 666
GsuI CTGGAG 3 cut(s) 121, 310, 945
HaeIII GGCC 4 cut(s) 62, 357, 798, 1085
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 7
Hin1II CATG 6 cut(s) 676, 853, 1005, 1039, 1135, 1159
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 9 cut(s) 35, 239, 286, 308, 433, 622, 729, 788, 995
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 329, 534
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 4 cut(s) 87, 117, 163, 619
Hpy188III TCNNGA 3 cut(s) 584, 626, 962
Hpy8I GTNNAC 1 cut(s) 709
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 9 cut(s) 253, 301, 322, 374, 543, 555, 628, 692, 1072
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 511, 894
HpyCH4V TGCA 4 cut(s) 170, 351, 676, 1018
HpyF10VI GCNNNNNNNGC 3 cut(s) 767, 792, 1082
HpyF3I CTNAG 4 cut(s) 84, 618, 644, 1049
HpySE526I ACGT 2 cut(s) 511, 894
Hsp92II CATG 6 cut(s) 676, 853, 1005, 1039, 1135, 1159
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 5 cut(s) 117, 204, 412, 898, 1117
LguI GCTCTTC 2 cut(s) 66, 927
LmnI GCTCC 5 cut(s) 329, 586, 637, 690, 1078
Lsp1109I GCAGC 5 cut(s) 59, 724, 727, 929, 1126
LweI GCATC 3 cut(s) 898, 967, 1112
MaeI CTAG 3 cut(s) 222, 381, 1103
MaeII ACGT 2 cut(s) 511, 894
MaeIII GTNAC 3 cut(s) 263, 565, 1004
MalI GATC 5 cut(s) 119, 206, 414, 900, 1119
MboI GATC 5 cut(s) 117, 204, 412, 898, 1117
MboII GAAGA 8 cut(s) 83, 214, 245, 346, 352, 649, 914, 990
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 695
MlsI TGGCCA 2 cut(s) 62, 1085
MluCI AATT 3 cut(s) 24, 449, 839
MluNI TGGCCA 2 cut(s) 62, 1085
MlyI GAGTC 4 cut(s) 248, 616, 723, 797
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 2 cut(s) 62, 1085
MroXI GAANNNNTTC 3 cut(s) 75, 290, 1098
MscI TGGCCA 2 cut(s) 62, 1085
MseI TTAA 2 cut(s) 477, 903
MslI CAYNNNNRTG 1 cut(s) 854
Msp20I TGGCCA 2 cut(s) 62, 1085
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 3 cut(s) 139, 328, 1026
MvaI CCWGG 3 cut(s) 139, 328, 1026
MvnI CGCG 2 cut(s) 270, 369
MwoI GCNNNNNNNGC 3 cut(s) 767, 792, 1082
NdeI CATATG 2 cut(s) 424, 1020
NdeII GATC 5 cut(s) 117, 204, 412, 898, 1117
NlaIII CATG 6 cut(s) 676, 853, 1005, 1039, 1135, 1159
NlaIV GGNNCC 3 cut(s) 102, 325, 651
NmuCI GTSAC 2 cut(s) 263, 565
PciSI GCTCTTC 2 cut(s) 66, 927
PdmI GAANNNNTTC 3 cut(s) 75, 290, 1098
PfeI GAWTC 5 cut(s) 35, 286, 308, 433, 995
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 7 cut(s) 49, 182, 739, 742, 797, 919, 1141
PleI GAGTC 4 cut(s) 247, 616, 723, 796
PpsI GAGTC 4 cut(s) 247, 616, 723, 796
PsiI TTATAA 1 cut(s) 1044
Psp6I CCWGG 3 cut(s) 137, 326, 1024
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 3 cut(s) 137, 326, 1024
PspN4I GGNNCC 3 cut(s) 102, 325, 651
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 854
SapI GCTCTTC 2 cut(s) 66, 927
SaqAI TTAA 2 cut(s) 477, 903
SatI GCNGC 7 cut(s) 48, 181, 738, 741, 796, 918, 1140
Sau3AI GATC 5 cut(s) 117, 204, 412, 898, 1117
SchI GAGTC 4 cut(s) 248, 616, 723, 797
ScrFI CCNGG 3 cut(s) 139, 328, 1026
SduI GDGCHC 1 cut(s) 695
SfaNI GCATC 3 cut(s) 898, 967, 1112
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 3 cut(s) 24, 449, 839
SsiI CCGC 6 cut(s) 181, 268, 420, 795, 980, 1076
SspMI CTAG 3 cut(s) 222, 381, 1103
StyD4I CCNGG 3 cut(s) 137, 326, 1024
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 2 cut(s) 514, 897
TaqI TCGA 3 cut(s) 69, 200, 1120
TasI AATT 3 cut(s) 24, 449, 839
TauI GCSGC 2 cut(s) 183, 798
TfiI GAWTC 5 cut(s) 35, 286, 308, 433, 995
Tru1I TTAA 2 cut(s) 477, 903
Tru9I TTAA 2 cut(s) 477, 903
TscAI CASTG 3 cut(s) 35, 149, 700
TseFI GTSAC 2 cut(s) 263, 565
TseI GCWGC 5 cut(s) 47, 737, 740, 917, 1139
Tsp45I GTSAC 2 cut(s) 263, 565
TspDTI ATGAA 2 cut(s) 729, 990
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 3 cut(s) 35, 149, 700
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 24, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 3 cut(s) 75, 290, 1098
XspI CTAG 3 cut(s) 222, 381, 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.