Rorug03G0319800

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000449
Physical Location & Seq
Reverse (-)
34536090 .. 34536532
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0319800.1

Sequence Viewer

Length: 261 bp
ATGGTTCTTCAAAATGATATCGATTTGCTTCATCCACCAGCTGATCTGGAGAAAAGGAAGCACAAGCTCAAGCGGTTTGTGCAGACCCCAAATTCTTTCTTCATGGATGTCAAATGCCAAGGATGTTTCAATATAACTACTGTGTTCAGTCACTCGCAAACCGTTATGGTGTGTGGGAACTGCCAGACAGTGTTGTGCCAGCCTACTGGTGGGCGTGCCAGGCTCACTGAGGGTTGTTCCTTCAGGAGGAAAGGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

86

Amino Acids

9.73

Weight (kDa)

9.1

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S27e PF01667 30 - 84 1.8e-26 Ribosomal protein S27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 209, 246
AgsI TTSAA 2 cut(s) 11, 130
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 2 cut(s) 41, 67
AluI AGCT 2 cut(s) 41, 67
ApoI RAATTY 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 246
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 220
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 31, 112, 128
BseLI CCNNNNNNNGG 2 cut(s) 209, 246
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 101
BshVI ATCGAT 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 209, 246
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 21
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 3 cut(s) 142, 163, 190
BstC8I GCNNGC 2 cut(s) 200, 216
BstDEI CTNAG 1 cut(s) 228
BstENI CCTNNNNNAGG 1 cut(s) 244
BstF5I GGATG 3 cut(s) 31, 112, 128
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 79, 220
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtsCI GGATG 3 cut(s) 31, 112, 128
BtsIMutI CAGTG 2 cut(s) 195, 225
Cac8I GCNNGC 2 cut(s) 200, 216
ClaI ATCGAT 1 cut(s) 21
CviAII CATG 1 cut(s) 103
CviJI RGCY 4 cut(s) 41, 67, 202, 223
CviKI_1 RGCY 4 cut(s) 41, 67, 202, 223
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 118
Eco32I GATATC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 218
EcoRV GATATC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 134, 167
FatI CATG 1 cut(s) 102
FokI GGATG 3 cut(s) 18, 119, 135
GsuI CTGGAG 1 cut(s) 68
Hin1II CATG 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 47, 244
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 3 cut(s) 142, 163, 190
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 220
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 8 cut(s) 32, 51, 192, 197, 205, 212, 229, 232
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 91
MluCI AATT 1 cut(s) 91
MnlI CCTC 2 cut(s) 223, 240
MspA1I CMGCKG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 2 cut(s) 79, 220
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 41
Sau3AI GATC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 220
SetI ASST 2 cut(s) 43, 69
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 3 cut(s) 142, 163, 190
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 91
TscAI CASTG 2 cut(s) 195, 232
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 2 cut(s) 20, 91
TspRI CASTG 2 cut(s) 195, 232
XagI CCTNNNNNAGG 1 cut(s) 244
XapI RAATTY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.