Rh4DG014900

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000449
Physical Location & Seq
Reverse (-)
2326556 .. 2335092
8537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG014900.1

Sequence Viewer

Length: 804 bp
ATGTCATCTTCAGCAGAAACCGTCGCGAATATCGAAGAGCTGCTTAAGCAGATCCTTATATGGGTTCCAGCTCTATCTCTGATCCGTTTCAAGTGCGTCTCCAAGCAATGGCTGTCTCTCATCTCCGACCCCGAGTTCCGTCGCTGCCACACCCTCCGAAACCCTAACTCCAAAATCTCAGCTTTCTTCTCTAGAAAAATCCAAGATGAGTCCTTCAGGTCCATCCTTCTTGGTAACCATGAAATCCCACCTGGTTGGAATCCCTTCAAAACCCTTAACAATTCCGATTCCGTCCCTGATGAATCAAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGCCATATTCCTAGATCTGGACTTGAAACAAAAAATCATCCCGTATATGTTGTCAATCCCACAACCAACCAATTCCGGGCACTTTCTTTTCCAGTTGTCAGACATAGTAGTTATTCTTTATTTGTGCGCTATGCTTTGGCTTTTGATCCTTCCATATCGCCTCATTACAAGGTGGTCTGCGTGAATAACTTCCCCTTTTATTATAATAGTTATAATAGGGGGAAGCACAAAATAGACATATATTCATCTAAGACCGGAGAGTGGAAGCATCTCGGTACTCCTTTCTTCCCCAGCCCCTCCGACGAGGGCAGCCACCATCATTTCATGAACAAGGCCATGCACTTTGACTGCAGGAGCAGAGAAGGCGCCATATACTGCAACGGCGCAGTTCATTGGATAAGAGACATAGGGGAAGCAAGCTTGCCATTCTACTCTTTCCCAGACGGCACTAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

267

Amino Acids

30.59

Weight (kDa)

9.13

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 48 4.3e-07 F-box domain
FBA_1 PF07734 91 - 208 9.4e-12 F-box associated beta propeller domain
FBA_3 PF08268 93 - 210 2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 549, 558
AccB1I GGYRCC 1 cut(s) 710
AccB7I CCANNNNNTGG 1 cut(s) 108
AccII CGCG 1 cut(s) 26
AclWI GGATC 3 cut(s) 46, 76, 485
AcuI CTGAAG 2 cut(s) 199, 305
AcyI GRCGYC 1 cut(s) 711
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 5 cut(s) 61, 108, 362, 421, 606
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 91, 268, 371
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 4 cut(s) 40, 71, 182, 765
AluI AGCT 4 cut(s) 40, 71, 182, 765
Alw26I GTCTC 3 cut(s) 103, 120, 741
AlwI GGATC 3 cut(s) 46, 76, 485
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 334, 678
ApeKI GCWGC 3 cut(s) 40, 144, 654
Asp700I GAANNNNTTC 2 cut(s) 263, 533
AspLEI GCGC 3 cut(s) 474, 713, 731
AspS9I GGNCC 1 cut(s) 219
AsuC2I CCSGG 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 710
BbvI GCAGC 3 cut(s) 27, 131, 666
BccI CCATC 2 cut(s) 230, 669
BceAI ACGGC 1 cut(s) 742
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 3 cut(s) 103, 120, 741
BfaI CTAG 2 cut(s) 192, 357
BfmI CTRYAG 1 cut(s) 694
BfoI RGCGCY 1 cut(s) 714
BfrI CTTAAG 1 cut(s) 44
BglII AGATCT 1 cut(s) 359
BisI GCNGC 3 cut(s) 41, 145, 655
BlsI GCNGC 3 cut(s) 42, 146, 656
Bme1390I CCNGG 2 cut(s) 252, 422
Bme18I GGWCC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 219
BmiI GGNNCC 2 cut(s) 66, 712
BmrFI CCNGG 2 cut(s) 252, 422
BmsI GCATC 1 cut(s) 622
BpuMI CCSGG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 711
BsaWI WCCGGW 1 cut(s) 599
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 108, 362, 421, 606
Bse1I ACTGG 1 cut(s) 437
Bse3DI GCAATG 2 cut(s) 113, 337
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 222, 382
BseLI CCNNNNNNNGG 5 cut(s) 61, 108, 362, 421, 606
BseMI GCAATG 2 cut(s) 113, 337
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 3 cut(s) 27, 131, 666
BseYI CCCAGC 1 cut(s) 635
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 336, 680
BshNI GGYRCC 1 cut(s) 710
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 2 cut(s) 421, 600
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 5 cut(s) 61, 108, 362, 421, 606
BsmAI GTCTC 3 cut(s) 103, 120, 741
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 336, 680
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 4 cut(s) 51, 81, 359, 490
Bsp68I TCGCGA 1 cut(s) 26
BspANI GGCC 2 cut(s) 336, 680
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 2 cut(s) 66, 712
BspMAI CTGCAG 1 cut(s) 698
BspPI GGATC 3 cut(s) 46, 76, 485
BspQI GCTCTTC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 710
BspTI CTTAAG 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 113, 337
BsrI ACTGG 1 cut(s) 437
BssMI GATC 4 cut(s) 51, 81, 359, 490
BssNI GRCGYC 1 cut(s) 711
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 711
BstAFI CTTAAG 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 763, 767
BstDEI CTNAG 2 cut(s) 178, 594
BstEII GGTNACC 1 cut(s) 233
BstF5I GGATG 2 cut(s) 222, 382
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 714
BstHHI GCGC 3 cut(s) 474, 713, 731
BstKTI GATC 4 cut(s) 54, 84, 362, 493
BstMAI GTCTC 3 cut(s) 103, 120, 741
BstMBI GATC 4 cut(s) 51, 81, 359, 490
BstMWI GCNNNNNNNGC 2 cut(s) 46, 708
BstNI CCWGG 1 cut(s) 252
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 250, 420
BstSFI CTRYAG 1 cut(s) 694
BstSLI GKGCMC 1 cut(s) 427
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 3 cut(s) 27, 131, 666
BstX2I RGATCY 2 cut(s) 51, 359
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 2 cut(s) 51, 359
BsuRI GGCC 2 cut(s) 336, 680
BtsCI GGATG 2 cut(s) 222, 382
BtuMI TCGCGA 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 763, 767
CciI TCATGA 1 cut(s) 669
CfoI GCGC 3 cut(s) 474, 713, 731
Cfr13I GGNCC 1 cut(s) 219
CseI GACGC 1 cut(s) 85
CsiI ACCWGGT 1 cut(s) 250
Csp6I GTAC 1 cut(s) 621
CviAII CATG 3 cut(s) 239, 670, 682
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 2 cut(s) 178, 594
DinI GGCGCC 1 cut(s) 712
DpnI GATC 4 cut(s) 53, 83, 361, 492
DpnII GATC 4 cut(s) 51, 81, 359, 490
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 219
Eco57I CTGAAG 2 cut(s) 199, 305
Eco88I CYCGRG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 712
EheI GGCGCC 1 cut(s) 712
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 3 cut(s) 242, 673, 685
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 278
FatI CATG 3 cut(s) 238, 669, 681
Fnu4HI GCNGC 3 cut(s) 41, 145, 655
FokI GGATG 2 cut(s) 209, 369
Fsp4HI GCNGC 3 cut(s) 41, 145, 655
FspBI CTAG 2 cut(s) 192, 357
GlaI GCGC 3 cut(s) 473, 712, 730
GluI GCNGC 3 cut(s) 41, 145, 655
GsaI CCCAGC 1 cut(s) 639
HaeII RGCGCY 1 cut(s) 714
HaeIII GGCC 2 cut(s) 336, 680
HapII CCGG 2 cut(s) 421, 600
HgaI GACGC 1 cut(s) 85
HhaI GCGC 3 cut(s) 474, 713, 731
Hin1I GRCGYC 1 cut(s) 711
Hin1II CATG 3 cut(s) 242, 673, 685
Hin6I GCGC 3 cut(s) 472, 711, 729
HinP1I GCGC 3 cut(s) 472, 711, 729
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 5 cut(s) 209, 259, 287, 302, 316
HpaII CCGG 2 cut(s) 421, 600
Hpy188I TCNGA 6 cut(s) 81, 127, 158, 286, 446, 646
Hpy188III TCNNGA 4 cut(s) 25, 192, 363, 670
Hpy99I CGWCG 3 cut(s) 26, 144, 650
HpyAV CCTTC 5 cut(s) 223, 236, 274, 504, 701
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 4 cut(s) 330, 685, 696, 723
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 708
HpyF3I CTNAG 2 cut(s) 178, 594
Hsp92I GRCGYC 1 cut(s) 711
Hsp92II CATG 3 cut(s) 242, 673, 685
HspAI GCGC 3 cut(s) 472, 711, 729
KasI GGCGCC 1 cut(s) 710
Kzo9I GATC 4 cut(s) 51, 81, 359, 490
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 699
Lsp1109I GCAGC 3 cut(s) 27, 131, 666
LweI GCATC 1 cut(s) 622
MabI ACCWGGT 1 cut(s) 250
MaeI CTAG 2 cut(s) 192, 357
MaeIII GTNAC 1 cut(s) 233
MalI GATC 4 cut(s) 53, 83, 361, 492
MboI GATC 4 cut(s) 51, 81, 359, 490
MboII GAAGA 4 cut(s) 47, 178, 311, 622
MflI RGATCY 2 cut(s) 51, 359
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 2 cut(s) 280, 416
Mly113I GGCGCC 1 cut(s) 711
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 3 cut(s) 150, 236, 669
MnlI CCTC 6 cut(s) 164, 306, 347, 516, 643, 652
MroXI GAANNNNTTC 2 cut(s) 263, 533
MseI TTAA 2 cut(s) 45, 276
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 2 cut(s) 421, 600
MspR9I CCNGG 2 cut(s) 252, 422
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 46, 708
NarI GGCGCC 1 cut(s) 711
NciI CCSGG 1 cut(s) 422
NdeII GATC 4 cut(s) 51, 81, 359, 490
NlaIII CATG 3 cut(s) 242, 673, 685
NlaIV GGNNCC 2 cut(s) 66, 712
NruI TCGCGA 1 cut(s) 26
PagI TCATGA 1 cut(s) 669
PciSI GCTCTTC 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 263, 533
PfeI GAWTC 4 cut(s) 259, 287, 302, 316
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 3 cut(s) 42, 146, 656
PleI GAGTC 1 cut(s) 217
PluTI GGCGCC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 217
PsiI TTATAA 2 cut(s) 549, 558
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 635
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 66, 712
PspPI GGNCC 1 cut(s) 219
PstI CTGCAG 1 cut(s) 698
PsuI RGATCY 2 cut(s) 51, 359
RruI TCGCGA 1 cut(s) 26
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 45, 276
SatI GCNGC 3 cut(s) 41, 145, 655
Sau3AI GATC 4 cut(s) 51, 81, 359, 490
Sau96I GGNCC 1 cut(s) 219
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 252, 422
SduI GDGCHC 1 cut(s) 427
SetI ASST 7 cut(s) 42, 73, 184, 221, 253, 519, 767
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 1 cut(s) 694
SfoI GGCGCC 1 cut(s) 712
SinI GGWCC 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 2 cut(s) 280, 416
SspDI GGCGCC 1 cut(s) 710
SspMI CTAG 2 cut(s) 192, 357
StyD4I CCNGG 2 cut(s) 250, 420
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 280, 416
TfiI GAWTC 4 cut(s) 259, 287, 302, 316
Tru1I TTAA 2 cut(s) 45, 276
Tru9I TTAA 2 cut(s) 45, 276
TseI GCWGC 3 cut(s) 40, 144, 654
TspDTI ATGAA 6 cut(s) 255, 315, 579, 658, 686, 725
TspGWI ACGGA 3 cut(s) 74, 128, 280
Van91I CCANNNNNTGG 1 cut(s) 108
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 219
XbaI TCTAGA 1 cut(s) 191
XmnI GAANNNNTTC 2 cut(s) 263, 533
XspI CTAG 2 cut(s) 192, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.