Rh4AG024700

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000449
Physical Location & Seq
Forward (+)
4825274 .. 4825960
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG024700.1

Sequence Viewer

Length: 687 bp
ATGGTGGCCATGCACTTTGATCGCAGGAGCAGGGAAGGCGCCATATACTGCAACGGCGCAGTTCATTGGATAAGAGAGAGAGGGGAAGCAAGATTGTCATTCTGCATAGTCCCAGGTGGTAGGTTTGAATTCGAAAGAAAGGAAACTGATGTGCTGCACTACTTTGATATAGGCCAAGAACGTCTGCTGCTCGTGTCCGCTACCCCTCCTGTCCCCTTGGTTGTCAAAAACATTGCGCTGGATTCTGATCCATGGCCCACTGAATGGCCGAGATTGGCTCAAAGATATTTTGGGGAGTCCGGTGGCCATTTGTATTTGATTGAGACTTACAAGAATTGCAAGACCCAATTTGATGTGATGGAGATGGAGAGGGACTCCTCTGGCTGGTTTGTCAAGTATCATGTTGATCTTCATTCGGTATTCACAGCTCTTCCTGATCCGAATGATTTTGTCATCTTGTGCCTCTCTCAAGAGAAGGAAAAACATAAAGAGGAGGATTCTTCAGCTGATCTTTTGTTGTATATGCCAGATAAGGTCATATCTTATAATCTGAGGAATAAGACCTTCAAGGCATCTGTTGTGGAGTTGGCCAATGAAGAACTTCTTCTTGCTATGGATGGTCGATTCTATAGGGATGAGGTTGTTATGTATCCTTACATGGAGGGTTTAGCTTGTGTGGAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

228

Amino Acids

26.54

Weight (kDa)

5.23

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccB1I GGYRCC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 264
AciI CCGC 1 cut(s) 198
AclWI GGATC 2 cut(s) 242, 431
AcoI YGGCCR 4 cut(s) 6, 266, 304, 588
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 264, 384
AgsI TTSAA 2 cut(s) 128, 568
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 3 cut(s) 428, 506, 671
AluI AGCT 3 cut(s) 428, 506, 671
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 242, 431
AoxI GGCC 6 cut(s) 6, 172, 254, 266, 304, 588
ApeKI GCWGC 2 cut(s) 154, 187
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 2 cut(s) 600, 603
AspLEI GCGC 3 cut(s) 41, 59, 238
AspS9I GGNCC 1 cut(s) 255
AsuII TTCGAA 1 cut(s) 132
BalI TGGCCA 3 cut(s) 8, 306, 590
BanI GGYRCC 1 cut(s) 38
BauI CACGAG 1 cut(s) 191
BbvI GCAGC 2 cut(s) 141, 174
BccI CCATC 3 cut(s) 352, 358, 611
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 114
BciVI GTATCC 1 cut(s) 660
BcoDI GTCTC 1 cut(s) 317
BfmI CTRYAG 1 cut(s) 628
BfoI RGCGCY 1 cut(s) 42
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 2 cut(s) 155, 188
BlsI GCNGC 2 cut(s) 156, 189
Bme1390I CCNGG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 581
BplI GAGNNNNNCTC 4 cut(s) 262, 294, 359, 391
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 112, 216, 251
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 384
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 112, 216, 251
BseGI GGATG 2 cut(s) 622, 640
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 264, 384
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 542
BseRI GAGGAG 2 cut(s) 367, 506
BseXI GCAGC 2 cut(s) 141, 174
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 6 cut(s) 8, 174, 256, 268, 306, 590
BshNI GGYRCC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 3 cut(s) 95, 197, 386
BslI CCNNNNNNNGG 2 cut(s) 264, 384
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 3 cut(s) 95, 197, 386
BsnI GGCC 6 cut(s) 8, 174, 256, 268, 306, 590
Bsp119I TTCGAA 1 cut(s) 132
Bsp143I GATC 5 cut(s) 19, 247, 406, 436, 508
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 1 cut(s) 198
BspANI GGCC 6 cut(s) 8, 174, 256, 268, 306, 590
BspCNI CTCAG 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 242, 431
BspQI GCTCTTC 1 cut(s) 435
BspT104I TTCGAA 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 112, 216, 251
BssMI GATC 5 cut(s) 19, 247, 406, 436, 508
BssNI GRCGYC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 2 cut(s) 216, 251
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 622, 640
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 3 cut(s) 41, 59, 238
BstKTI GATC 5 cut(s) 22, 250, 409, 439, 511
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 5 cut(s) 19, 247, 406, 436, 508
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 628
BstV1I GCAGC 2 cut(s) 141, 174
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 6 cut(s) 8, 174, 256, 268, 306, 590
BtgI CCRYGG 1 cut(s) 251
BtsCI GGATG 2 cut(s) 622, 640
BtsIMutI CAGTG 1 cut(s) 258
CfoI GCGC 3 cut(s) 41, 59, 238
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 4 cut(s) 10, 252, 401, 658
DdeI CTNAG 1 cut(s) 551
DinI GGCGCC 1 cut(s) 40
DpnI GATC 5 cut(s) 21, 249, 408, 438, 510
DpnII GATC 5 cut(s) 19, 247, 406, 436, 508
EaeI YGGCCR 4 cut(s) 6, 266, 304, 588
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco130I CCWWGG 2 cut(s) 216, 251
Eco57I CTGAAG 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 216, 251
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 216, 251
FaeI CATG 4 cut(s) 13, 255, 404, 661
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 3 cut(s) 95, 197, 386
FatI CATG 4 cut(s) 9, 251, 400, 657
Fnu4HI GCNGC 2 cut(s) 155, 188
FokI GGATG 2 cut(s) 629, 647
Fsp4HI GCNGC 2 cut(s) 155, 188
GlaI GCGC 3 cut(s) 40, 58, 237
GluI GCNGC 2 cut(s) 155, 188
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 6 cut(s) 8, 174, 256, 268, 306, 590
HapII CCGG 1 cut(s) 300
HhaI GCGC 3 cut(s) 41, 59, 238
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 4 cut(s) 13, 255, 404, 661
Hin6I GCGC 3 cut(s) 39, 57, 236
HinP1I GCGC 3 cut(s) 39, 57, 236
HinfI GANTC 5 cut(s) 242, 296, 374, 497, 624
HpaII CCGG 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 247, 441, 552
Hpy188III TCNNGA 2 cut(s) 434, 470
HpyAV CCTTC 3 cut(s) 29, 469, 574
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 13, 51, 105, 157, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 4 cut(s) 13, 255, 404, 661
HspAI GCGC 3 cut(s) 39, 57, 236
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 5 cut(s) 19, 247, 406, 436, 508
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 2 cut(s) 141, 174
LweI GCATC 1 cut(s) 581
MaeII ACGT 1 cut(s) 181
MalI GATC 5 cut(s) 21, 249, 408, 438, 510
MboI GATC 5 cut(s) 19, 247, 406, 436, 508
MboII GAAGA 5 cut(s) 401, 422, 492, 596, 608
MlsI TGGCCA 3 cut(s) 8, 306, 590
MluCI AATT 3 cut(s) 128, 334, 347
MluNI TGGCCA 3 cut(s) 8, 306, 590
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 2 cut(s) 305, 368
Mox20I TGGCCA 3 cut(s) 8, 306, 590
MroXI GAANNNNTTC 2 cut(s) 600, 603
MscI TGGCCA 3 cut(s) 8, 306, 590
Msp20I TGGCCA 3 cut(s) 8, 306, 590
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 39
NcoI CCATGG 1 cut(s) 251
NdeII GATC 5 cut(s) 19, 247, 406, 436, 508
NlaIII CATG 4 cut(s) 13, 255, 404, 661
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 294
NspV TTCGAA 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 435
PdmI GAANNNNTTC 2 cut(s) 600, 603
PfeI GAWTC 3 cut(s) 242, 497, 624
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 2 cut(s) 156, 189
PleI GAGTC 2 cut(s) 304, 368
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 2 cut(s) 304, 368
PsiI TTATAA 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 506
SapI GCTCTTC 1 cut(s) 435
SatI GCNGC 2 cut(s) 155, 188
Sau3AI GATC 5 cut(s) 19, 247, 406, 436, 508
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 2 cut(s) 305, 368
ScrFI CCNGG 1 cut(s) 114
SetI ASST 9 cut(s) 118, 125, 184, 430, 508, 537, 566, 642, 673
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 628
SfoI GGCGCC 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 468
SmoI CTYRAG 1 cut(s) 468
Sse9I AATT 3 cut(s) 128, 334, 347
SsiI CCGC 1 cut(s) 198
SspDI GGCGCC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 216, 251
TaiI ACGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 132, 622
TasI AATT 3 cut(s) 128, 334, 347
TfiI GAWTC 3 cut(s) 242, 497, 624
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 154, 187
TspDTI ATGAA 3 cut(s) 53, 401, 609
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 264
XapI RAATTY 1 cut(s) 128
XmnI GAANNNNTTC 2 cut(s) 600, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.