RLG00000010082

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000449
Physical Location & Seq
Forward (+)
62797757 .. 62799338
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010082

Sequence Viewer

Length: 1209 bp
ATGGCATTGTCGAGCGTTTCATCAGCAGAAAGCATAGGGAATATTGAAGAGCTTCTTAGTCAGATTCTTGTATGGGTTCCTGCTCTATCTCTGATCCGTTTCAAGTGCGTCTCCAAGCACTGGCTCGCTCTTATCTCCGACCCCGAGTTCCGTCGCCGCCACACCCTCCGAAACCCTAACTCCAAAATCTCAGCTTTCTTCTCTCCCCAAACCAATGAAGAAACCTTCAAGTCCATCCGTCTTGGTAACCATGAAATCCCACCTAGGTGCAATCCCTTCAAAACCCTAAACAATTCCGTGGCTGATAAATCAAAGTTGAGGATTCTTCAGTCCTGCAATGGCCTCTTTCTCTGTCATATTCCTATATTTGGAGAACATCATCCCGTATATGTTGTCAATCCCACAACCAACCAATTCCGGGCACTTTCTTTTCCAATTGTCAAAGAAGACGGGGACAGGCATACTTTTGTACGCTATGCTTTGGCTTTTGATCCTTCCACATCGCCTCATTACAAGGTGGTCTGCGTGAATAACTTCCCCCATTATTATGATGGGGGGAACCACAAAATAGATATATATTCATCTGAGACCGGAGAGTGGAAGCGTCTCGATACTCCATTCTTCCCCAGCCCCTCCGACGAGGGCAGGCACCATGATTTGATGAACAAGGCCATGCACTTTAACTACAGGAGCAGAGAAGGCGCCATATACTGCAACGGTGCAGTTCATTGGATAAGAGACAGAGGGGAAGCAAGCTTGTCATTCTGCGCATTCCCAGATGATAGGTTTGAATTCACAAGAGAGGAAACTGATGTGCTGCACTACTTCGACATAGGCCAAGAGCGTTTGCTGGTCGCTTCAGCTACCCCTCCTGTCCCCTTGGTTGTCAAGAACATTCCACTGAAGGTTAGTGGTTTTGGCTGCGAGACTCCGACTGAGTGGCCGTCATTGACTCAGAGATATTTTGGGGAGTGCGGTGGCTGTTTGTACTTGATTGAGACTTACAAGCATTGCAACACTCAATTTGATGTCATGGAGATGGAGAGGGACTACTCTGGCTGGCTTGTCAAGTATCATGTTGATCTTTATCCGGTAGTAGCAGCTGTTCCTGGACAGGATTGGAATGCTTTTGTTGTCTTGTGCCTTTCTCAAGAGGAGGAAACAGAGTGGTATTTTCCTAATTTAACTGTTATTCGTGGTTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

403

Amino Acids

46.13

Weight (kDa)

6.1

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 52 3.5e-06 F-box domain
FBA_3 PF08268 62 - 214 1.1e-06 F-box associated beta propeller domain
FBA_1 PF07734 85 - 246 3.2e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 769
AccB1I GGYRCC 2 cut(s) 648, 701
AccB7I CCANNNNNTGG 1 cut(s) 120
AciI CCGC 2 cut(s) 157, 975
AclWI GGATC 2 cut(s) 88, 485
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 3 cut(s) 311, 843, 923
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 2 cut(s) 471, 989
AfiI CCNNNNNNNGG 4 cut(s) 120, 368, 418, 597
AgsI TTSAA 5 cut(s) 47, 103, 229, 280, 791
AjnI CCWGG 1 cut(s) 1108
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 5 cut(s) 52, 194, 756, 863, 1103
AluI AGCT 5 cut(s) 52, 194, 756, 863, 1103
Alw26I GTCTC 6 cut(s) 115, 581, 611, 732, 920, 992
AlwI GGATC 2 cut(s) 88, 485
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 4 cut(s) 340, 669, 835, 941
ApeKI GCWGC 3 cut(s) 817, 921, 1100
ApoI RAATTY 1 cut(s) 791
Asp700I GAANNNNTTC 2 cut(s) 51, 533
AspA2I CCTAGG 1 cut(s) 263
AspLEI GCGC 2 cut(s) 704, 770
AsuC2I CCSGG 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 143
AvrII CCTAGG 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 2 cut(s) 648, 701
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 804, 908, 1112
BccI CCATC 3 cut(s) 242, 545, 1033
BceAI ACGGC 1 cut(s) 928
BciT130I CCWGG 1 cut(s) 1110
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 6 cut(s) 115, 581, 611, 732, 920, 992
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 685
BfoI RGCGCY 1 cut(s) 705
BisI GCNGC 4 cut(s) 157, 818, 922, 1101
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 4 cut(s) 158, 819, 923, 1102
Bme1390I CCNGG 2 cut(s) 419, 1110
BmeT110I CYCGRG 1 cut(s) 143
BmiI GGNNCC 4 cut(s) 78, 560, 650, 703
BmrFI CCNGG 2 cut(s) 419, 1110
BpiI GAAGAC 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 1134
BpuMI CCSGG 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 1086
BsaHI GRCGYC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 263, 297, 879
BsaWI WCCGGW 2 cut(s) 590, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 368, 418, 597
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 343, 1009
Bse8I GATNNNNATC 1 cut(s) 1086
BseBI CCWGG 1 cut(s) 1110
BseDI CCNNGG 3 cut(s) 263, 297, 879
BseGI GGATG 2 cut(s) 234, 379
BseJI GATNNNNATC 1 cut(s) 1086
BseLI CCNNNNNNNGG 4 cut(s) 120, 368, 418, 597
BseMI GCAATG 2 cut(s) 343, 1009
BseMII CTCAG 4 cut(s) 204, 576, 927, 968
BseNI ACTGG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 1169
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 3 cut(s) 804, 908, 1112
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 2 cut(s) 741, 803
BshFI GGCC 4 cut(s) 342, 671, 837, 943
BshNI GGYRCC 2 cut(s) 648, 701
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 3 cut(s) 418, 591, 1091
BslFI GGGAC 3 cut(s) 467, 860, 1061
BslI CCNNNNNNNGG 4 cut(s) 120, 368, 418, 597
BsmAI GTCTC 6 cut(s) 115, 581, 611, 732, 920, 992
BsmBI CGTCTC 2 cut(s) 115, 611
BsmFI GGGAC 3 cut(s) 467, 860, 1061
BsmI GAATGC 2 cut(s) 770, 1129
BsnI GGCC 4 cut(s) 342, 671, 837, 943
Bso31I GGTCTC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 3 cut(s) 93, 490, 1081
BspACI CCGC 2 cut(s) 157, 975
BspANI GGCC 4 cut(s) 342, 671, 837, 943
BspCNI CTCAG 4 cut(s) 203, 577, 928, 967
BspLI GGNNCC 4 cut(s) 78, 560, 650, 703
BspPI GGATC 2 cut(s) 88, 485
BspQI GCTCTTC 1 cut(s) 42
BspT107I GGYRCC 2 cut(s) 648, 701
BspTNI GGTCTC 1 cut(s) 581
BsrDI GCAATG 2 cut(s) 343, 1009
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 263, 297, 879
BssMI GATC 3 cut(s) 93, 490, 1081
BssNI GRCGYC 1 cut(s) 702
BssT1I CCWWGG 2 cut(s) 263, 879
Bst2UI CCWGG 1 cut(s) 1110
Bst4CI ACNGT 2 cut(s) 719, 1189
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 702
BstC8I GCNNGC 4 cut(s) 126, 647, 754, 1061
BstDEI CTNAG 5 cut(s) 56, 190, 585, 936, 954
BstDSI CCRYGG 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 245
BstF5I GGATG 2 cut(s) 234, 379
BstH2I RGCGCY 1 cut(s) 705
BstHHI GCGC 2 cut(s) 704, 770
BstKTI GATC 3 cut(s) 96, 493, 1084
BstMAI GTCTC 6 cut(s) 115, 581, 611, 732, 920, 992
BstMBI GATC 3 cut(s) 93, 490, 1081
BstMWI GCNNNNNNNGC 1 cut(s) 699
BstNI CCWGG 1 cut(s) 1110
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 417, 1108
BstSFI CTRYAG 1 cut(s) 685
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 804, 908, 1112
BstV2I GAAGAC 1 cut(s) 453
BsuRI GGCC 4 cut(s) 342, 671, 837, 943
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 2 cut(s) 234, 379
BtsIMutI CAGTG 2 cut(s) 118, 899
Cac8I GCNNGC 4 cut(s) 126, 647, 754, 1061
CfoI GCGC 2 cut(s) 704, 770
CseI GACGC 2 cut(s) 97, 593
Csp6I GTAC 2 cut(s) 470, 988
CviAII CATG 5 cut(s) 251, 653, 673, 1033, 1076
CviQI GTAC 2 cut(s) 470, 988
DdeI CTNAG 5 cut(s) 56, 190, 585, 936, 954
DinI GGCGCC 1 cut(s) 703
DpnI GATC 3 cut(s) 95, 492, 1083
DpnII GATC 3 cut(s) 93, 490, 1081
EaeI YGGCCR 1 cut(s) 941
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 263, 879
Eco31I GGTCTC 1 cut(s) 581
Eco57I CTGAAG 3 cut(s) 311, 843, 923
Eco88I CYCGRG 1 cut(s) 143
Eco91I GGTNACC 1 cut(s) 245
EcoO65I GGTNACC 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 1 cut(s) 1108
EcoT14I CCWWGG 2 cut(s) 263, 879
EgeI GGCGCC 1 cut(s) 703
EheI GGCGCC 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 263, 879
Esp3I CGTCTC 2 cut(s) 115, 611
FaeI CATG 5 cut(s) 254, 656, 676, 1036, 1079
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 3 cut(s) 467, 860, 1061
FatI CATG 5 cut(s) 250, 652, 672, 1032, 1075
Fnu4HI GCNGC 4 cut(s) 157, 818, 922, 1101
FokI GGATG 2 cut(s) 221, 366
Fsp4HI GCNGC 4 cut(s) 157, 818, 922, 1101
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 1 cut(s) 769
GlaI GCGC 2 cut(s) 703, 769
GluI GCNGC 4 cut(s) 157, 818, 922, 1101
GsaI CCCAGC 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 705
HaeIII GGCC 4 cut(s) 342, 671, 837, 943
HapII CCGG 3 cut(s) 418, 591, 1091
HgaI GACGC 2 cut(s) 97, 593
HhaI GCGC 2 cut(s) 704, 770
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 5 cut(s) 254, 656, 676, 1036, 1079
Hin6I GCGC 2 cut(s) 702, 768
HinP1I GCGC 2 cut(s) 702, 768
HindIII AAGCTT 1 cut(s) 754
HinfI GANTC 4 cut(s) 64, 322, 928, 952
HpaII CCGG 3 cut(s) 418, 591, 1091
Hpy188I TCNGA 8 cut(s) 63, 93, 139, 170, 586, 637, 933, 957
Hpy188III TCNNGA 3 cut(s) 608, 889, 1151
Hpy99I CGWCG 2 cut(s) 156, 641
HpyAV CCTTC 5 cut(s) 235, 286, 504, 692, 898
HpyCH4III ACNGT 2 cut(s) 719, 1189
HpyCH4V TGCA 7 cut(s) 270, 336, 676, 714, 722, 820, 1014
HpyF10VI GCNNNNNNNGC 1 cut(s) 699
HpyF3I CTNAG 5 cut(s) 56, 190, 585, 936, 954
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 5 cut(s) 254, 656, 676, 1036, 1079
HspAI GCGC 2 cut(s) 702, 768
KasI GGCGCC 1 cut(s) 701
Kzo9I GATC 3 cut(s) 93, 490, 1081
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 690
Lsp1109I GCAGC 3 cut(s) 804, 908, 1112
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 95, 492, 1083
MboI GATC 3 cut(s) 93, 490, 1081
MboII GAAGA 6 cut(s) 59, 190, 230, 317, 458, 613
MfeI CAATTG 1 cut(s) 435
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 6 cut(s) 292, 413, 435, 791, 1022, 1180
Mly113I GGCGCC 1 cut(s) 702
MlyI GAGTC 2 cut(s) 922, 946
MmeI TCCRAC 3 cut(s) 162, 660, 956
MroXI GAANNNNTTC 2 cut(s) 51, 533
MseI TTAA 2 cut(s) 681, 1184
MslI CAYNNNNRTG 3 cut(s) 265, 546, 1037
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 3 cut(s) 418, 591, 1091
MspR9I CCNGG 2 cut(s) 419, 1110
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 2 cut(s) 770, 1129
MvaI CCWGG 1 cut(s) 1110
MwoI GCNNNNNNNGC 1 cut(s) 699
NarI GGCGCC 1 cut(s) 702
NciI CCSGG 1 cut(s) 419
NdeII GATC 3 cut(s) 93, 490, 1081
NlaIII CATG 5 cut(s) 254, 656, 676, 1036, 1079
NlaIV GGNNCC 4 cut(s) 78, 560, 650, 703
NsbI TGCGCA 1 cut(s) 769
OliI CACNNNNGTG 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 42
PctI GAATGC 2 cut(s) 770, 1129
PdmI GAANNNNTTC 2 cut(s) 51, 533
PfeI GAWTC 2 cut(s) 64, 322
PflMI CCANNNNNTGG 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 1108
PkrI GCNGC 4 cut(s) 158, 819, 923, 1102
PleI GAGTC 2 cut(s) 922, 946
PluTI GGCGCC 1 cut(s) 705
PpsI GAGTC 2 cut(s) 922, 946
Psp6I CCWGG 1 cut(s) 1108
PspEI GGTNACC 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 1 cut(s) 1108
PspN4I GGNNCC 4 cut(s) 78, 560, 650, 703
PsrI GAACNNNNNNTAC 2 cut(s) 1089, 1121
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 2 cut(s) 471, 989
RsaNI GTAC 2 cut(s) 470, 988
RseI CAYNNNNRTG 3 cut(s) 265, 546, 1037
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 2 cut(s) 681, 1184
SatI GCNGC 4 cut(s) 157, 818, 922, 1101
Sau3AI GATC 3 cut(s) 93, 490, 1081
SchI GAGTC 2 cut(s) 922, 946
ScrFI CCNGG 2 cut(s) 419, 1110
SduI GDGCHC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 685
SfoI GGCGCC 1 cut(s) 703
SmiMI CAYNNNNRTG 3 cut(s) 265, 546, 1037
SmlI CTYRAG 1 cut(s) 1149
SmoI CTYRAG 1 cut(s) 1149
Sse9I AATT 6 cut(s) 292, 413, 435, 791, 1022, 1180
SsiI CCGC 2 cut(s) 157, 975
SspDI GGCGCC 1 cut(s) 701
SspI AATATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 417, 1108
StyI CCWWGG 2 cut(s) 263, 879
TaaI ACNGT 2 cut(s) 719, 1189
TaqI TCGA 3 cut(s) 11, 609, 828
TasI AATT 6 cut(s) 292, 413, 435, 791, 1022, 1180
TatI WGTACW 1 cut(s) 987
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 2 cut(s) 64, 322
Tru1I TTAA 2 cut(s) 681, 1184
Tru9I TTAA 2 cut(s) 681, 1184
TscAI CASTG 2 cut(s) 125, 906
TseI GCWGC 3 cut(s) 817, 921, 1100
TspDTI ATGAA 6 cut(s) 9, 231, 267, 570, 677, 716
TspGWI ACGGA 4 cut(s) 86, 140, 227, 286
TspRI CASTG 2 cut(s) 125, 906
Van91I CCANNNNNTGG 1 cut(s) 120
XapI RAATTY 1 cut(s) 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmaJI CCTAGG 1 cut(s) 263
XmnI GAANNNNTTC 2 cut(s) 51, 533
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.