FvH4_6g31161

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000449
Physical Location & Seq
Reverse (-)
24325380 .. 24326141
762 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31161.t1

Sequence Viewer

Length: 684 bp
ATGTATTCTAAGGAGGAACAGCTCAAAACAGACGTATATTCATCTGAAACTGGAGAGTGGAAACATCTTGAGACTCCTTTCTTCCACGGCCAGTCCTACAACTTCAACTGGAAGAGCAGGAAGGAATTCACAAGACATGAAACTGATGTGCTGCACTACTTTGAGGTGAGCCAAGAGCGTATGCTGGTAGTGTCTGCTACCACCCCTGTCCCTTCGGTGGTCAAAAACATTCCGGTCGGCTCTGGCTACTGGCAACCAACTATGTGGCCGATATTGGCTCAGAGATATTTTGGGGAGTGCGGTGGCCGTTTGTACTTGATTGAGACTTATGAGCATTGTTTGACCCAATTTGATGTGATGGAGATGGAAAGGGACTACTCTGGCTGGTTTGTCAAGTATAATGTTGATCTTAATCCTCTAGCCGCAGCTCTTCCCGGACAGGATTGGGATCCTCTTATTGTCTTGTGCCTTTCTCAAGAGGAGGAAACATATAATACTGGGTTTGAGGATTCTTCAGTTGCTCTTTTGTTGCACCTGCCTGGTAAGGTTAAATCTTATAATCTTAGGAATAAGACCATTAGGACATATGTTGAGTTAGTCAATAAGGAACTAGGTTTAGATTATCATAATCGTATTCTAGAGGATGTTGCTTTTCCTTGCATGGAGACTTTAGCTTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

228

Amino Acids

26.45

Weight (kDa)

5.02

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AarI CACCTGC 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 543
AciI CCGC 2 cut(s) 300, 423
AclWI GGATC 2 cut(s) 443, 456
AcoI YGGCCR 3 cut(s) 88, 266, 304
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 538
AluBI AGCT 3 cut(s) 22, 428, 674
AluI AGCT 3 cut(s) 22, 428, 674
Alw26I GTCTC 3 cut(s) 65, 317, 659
AlwI GGATC 2 cut(s) 443, 456
AoxI GGCC 3 cut(s) 88, 266, 304
ApeKI GCWGC 2 cut(s) 151, 425
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 178
BamHI GGATCC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 138, 437
BccI CCATC 2 cut(s) 352, 358
BceAI ACGGC 2 cut(s) 103, 291
BciT130I CCWGG 1 cut(s) 540
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 3 cut(s) 65, 317, 659
BfaI CTAG 3 cut(s) 419, 611, 638
BfuAI ACCTGC 1 cut(s) 543
BisI GCNGC 3 cut(s) 152, 423, 426
BlsI GCNGC 3 cut(s) 153, 424, 427
Bme1390I CCNGG 2 cut(s) 435, 540
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 2 cut(s) 435, 540
BmrI ACTGGG 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 89, 459
BpuMI CCSGG 1 cut(s) 435
BsaBI GATNNNNATC 2 cut(s) 411, 447
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 5 cut(s) 55, 91, 113, 254, 502
Bse8I GATNNNNATC 2 cut(s) 411, 447
BseBI CCWGG 1 cut(s) 540
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 649
BseJI GATNNNNATC 2 cut(s) 411, 447
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 5 cut(s) 55, 91, 113, 254, 502
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 138, 437
BsgI GTGCAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 90, 268, 306
BsiEI CGRYCG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 233, 435
BslFI GGGAC 2 cut(s) 194, 386
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 3 cut(s) 65, 317, 659
BsmFI GGGAC 2 cut(s) 194, 386
BsnI GGCC 3 cut(s) 90, 268, 306
Bsp143I GATC 2 cut(s) 406, 448
BspACI CCGC 2 cut(s) 300, 423
BspANI GGCC 3 cut(s) 90, 268, 306
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 543
BspPI GGATC 2 cut(s) 443, 456
BspQI GCTCTTC 2 cut(s) 107, 435
BsrI ACTGG 5 cut(s) 55, 91, 113, 254, 502
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 2 cut(s) 406, 448
Bst2UI CCWGG 1 cut(s) 540
Bst6I CTCTTC 2 cut(s) 107, 435
BstDEI CTNAG 3 cut(s) 9, 279, 563
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 649
BstKTI GATC 2 cut(s) 409, 451
BstMAI GTCTC 3 cut(s) 65, 317, 659
BstMBI GATC 2 cut(s) 406, 448
BstMCI CGRYCG 1 cut(s) 237
BstNI CCWGG 1 cut(s) 540
BstSCI CCNGG 2 cut(s) 433, 538
BstV1I GCAGC 2 cut(s) 138, 437
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 264
BstYI RGATCY 1 cut(s) 448
BsuRI GGCC 3 cut(s) 90, 268, 306
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 649
BveI ACCTGC 1 cut(s) 543
Csp6I GTAC 1 cut(s) 313
CviAII CATG 2 cut(s) 137, 661
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 3 cut(s) 9, 279, 563
DpnI GATC 2 cut(s) 408, 450
DpnII GATC 2 cut(s) 406, 448
EaeI YGGCCR 3 cut(s) 88, 266, 304
Eam1104I CTCTTC 2 cut(s) 107, 435
EarI CTCTTC 2 cut(s) 107, 435
Eco57I CTGAAG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 538
FaeI CATG 2 cut(s) 140, 664
FaqI GGGAC 2 cut(s) 194, 386
FatI CATG 2 cut(s) 136, 660
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 3 cut(s) 152, 423, 426
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 3 cut(s) 152, 423, 426
FspBI CTAG 3 cut(s) 419, 611, 638
GluI GCNGC 3 cut(s) 152, 423, 426
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 3 cut(s) 90, 268, 306
HapII CCGG 2 cut(s) 233, 435
Hin1II CATG 2 cut(s) 140, 664
HinfI GANTC 2 cut(s) 73, 509
HpaII CCGG 2 cut(s) 233, 435
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 46, 282
Hpy188III TCNNGA 3 cut(s) 68, 476, 638
HpyAV CCTTC 2 cut(s) 115, 222
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 154, 532, 660
HpyF3I CTNAG 3 cut(s) 9, 279, 563
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 140, 664
Kzo9I GATC 2 cut(s) 406, 448
LguI GCTCTTC 2 cut(s) 107, 435
Lsp1109I GCAGC 2 cut(s) 138, 437
MaeI CTAG 3 cut(s) 419, 611, 638
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 408, 450
MboI GATC 2 cut(s) 406, 448
MboII GAAGA 4 cut(s) 73, 124, 422, 504
MflI RGATCY 1 cut(s) 448
MluCI AATT 2 cut(s) 125, 347
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 8 cut(s) 7, 157, 426, 462, 472, 475, 499, 634
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 2 cut(s) 411, 549
MspI CCGG 2 cut(s) 233, 435
MspR9I CCNGG 2 cut(s) 435, 540
MvaI CCWGG 1 cut(s) 540
NciI CCSGG 1 cut(s) 435
NdeI CATATG 1 cut(s) 586
NdeII GATC 2 cut(s) 406, 448
NlaIII CATG 2 cut(s) 140, 664
NlaIV GGNNCC 1 cut(s) 450
PaqCI CACCTGC 1 cut(s) 543
PciSI GCTCTTC 2 cut(s) 107, 435
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 509
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 3 cut(s) 153, 424, 427
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PsiI TTATAA 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 538
PspGI CCWGG 1 cut(s) 538
PspN4I GGNNCC 1 cut(s) 450
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SapI GCTCTTC 2 cut(s) 107, 435
SaqAI TTAA 2 cut(s) 411, 549
SatI GCNGC 3 cut(s) 152, 423, 426
Sau3AI GATC 2 cut(s) 406, 448
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 435, 540
SetI ASST 8 cut(s) 24, 36, 168, 430, 537, 549, 616, 676
SmlI CTYRAG 2 cut(s) 68, 474
SmoI CTYRAG 2 cut(s) 68, 474
Sse9I AATT 2 cut(s) 125, 347
SsiI CCGC 2 cut(s) 300, 423
SspMI CTAG 3 cut(s) 419, 611, 638
StyD4I CCNGG 2 cut(s) 433, 538
TaiI ACGT 1 cut(s) 36
TasI AATT 2 cut(s) 125, 347
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 2 cut(s) 411, 549
Tru9I TTAA 2 cut(s) 411, 549
TseI GCWGC 2 cut(s) 151, 425
TspDTI ATGAA 2 cut(s) 30, 153
XapI RAATTY 1 cut(s) 125
XbaI TCTAGA 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 3 cut(s) 419, 611, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.