Rh4BG013900

F-box protein At5g07610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000449
Physical Location & Seq
Reverse (-)
1939369 .. 1946111
6743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG013900.1

Sequence Viewer

Length: 909 bp
ATGGCGCAAAGAAACGAAAGGAGAATTCGCTGCGATTCCTCATCAGCAGCAGAAACGGTGGCCAATATCGAAGAGCTTCTGTCTCAGATACTTGTATTGGCTCCAGCCTTATCTCTGATCCGTTTCAAGTGCGTCTCCAGGCACTGGCTCACTCTCATCTCCGACCCCGGATTTTTTCGCCGCCACTTACATCAAAAGTCGAAGATCTCCGGCTTCTTTTCTAGCCAAACCGAAGACGAGTCCTTCAAGTCCATTGCTTTTAGTGACCGCGAAATCCCATCTGGGAATCCCTTCAAAACTATAAATGATTCCTTCGGTGATGGCTCCAGGTTGAAGATTATTCAATCCTGCAACGGCCTCTTCCTTTGCCTTCGCTACTCTAGGGATATTTCTCTTTTGCGTCAATCATATGGTGTCAAAGATCATCCCGCATATGTTGTGAATCCCACAACCAACAAATTCTTGGCTCTTTATTCTCCAAGCGTTAAGAAAAATAAAAAACGTTCTAGTTTTTTAGTACGTTATGCTCTGGCTTTTGACCCTTCCATATCACCTTTTTACAAGGTGGTCTGCGTGACTAACTACTCGTTTCGGGAGCAGTCCCACCACATAGACATCTATTCCTCTGAGACTCAAGAGTGGAAGGAGCTTCTCAGGGTTCCTTTCTTCCCCAGCTATCCCATGCACTTTAACCACAGGAGCACGGAAGGGGCAGTATACTGTAATGGCAAGATTCATTGGATAAGACGCCTAACCGACAGATTTGGCTATGACTCATGGTGGCAGTTCCGCGATGGTAGATTCATAAGAGATGAAGGTGACGTGTTACACTACTTTGACATAGATGAACAAAGTTTGCGACTCGTCGCTGCTGCTACTCCTGTTCCTGTGGCTGTTTATATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

302

Amino Acids

34.98

Weight (kDa)

9.24

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 71 - 242 4.1e-10 F-box associated beta propeller domain
FBA_1 PF07734 108 - 251 4.8e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000449)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12890 FvH4_4g01370 FvH4_4g01420 FvH4_4g01430 FvH4_4g01472 FvH4_4g01490 FvH4_6g31140 FvH4_6g31150 FvH4_6g31161 FvH4_6g43941 FvH4_6g43961
rosa_chinensis RchiOBHm_Chr4g0387951 RchiOBHm_Chr4g0388001 RchiOBHm_Chr4g0388011 RchiOBHm_Chr4g0388051 RchiOBHm_Chr4g0388631 RchiOBHm_Chr4g0388641 RchiOBHm_Chr4g0388661 RchiOBHm_Chr4g0388801
rosa_laevigata RLG00000010028 RLG00000010030 RLG00000010032 RLG00000010082 RLG00000010086 RLG00000010089 RLG00000010091 RLG00000014277
rosa_multiflora Rmu_co8138914.1_g000001 Rmu_sc0000697.1_g000015 Rmu_sc0002180.1_g000030 Rmu_sc0002509.1_g000011 Rmu_sc0002509.1_g000012 Rmu_sc0002509.1_g000020 Rmu_sc0002509.1_g000021 Rmu_sc0004459.1_g000003 Rmu_sc0004459.1_g000005 Rmu_sc0006767.1_g000007 Rmu_sc0014755.1_g000003 Rmu_sc0014755.1_g000004 Rmu_sc0036097.1_g000001
rosa_roxburghii Rroxscaffold_2G00089440 Rroxscaffold_3G00220040 Rroxscaffold_5G00334500 Rroxscaffold_5G00334530 Rroxscaffold_5G00334540 Rroxscaffold_5G00335080
rosa_rugosa Rorug02G0485300 Rorug03G0314100 Rorug03G0314200 Rorug03G0314500 Rorug03G0314500 Rorug03G0314600 Rorug03G0319800 Rorug03G0319900 Rorug03G0320000 Rorug06G0011400
rosa_samantha Rh4AG019700 Rh4AG019900 Rh4AG020200 Rh4AG023900 Rh4AG024000 Rh4AG024700 Rh4BG013900 Rh4BG014100 Rh4BG014200 Rh4BG014300 Rh4BG014400 Rh4BG014500 Rh4BG014600 Rh4BG014700 Rh4BG017100 Rh4BG017400 Rh4BG017500 Rh4BG017600 Rh4BG017700 Rh4BG089200 Rh4DG014500 Rh4DG014800 Rh4DG014900 Rh4DG015400 Rh4DG017900 Rh4DG018000 Rh6BG127900 Rh6CG126300 Rh6DG113400
rosa_wichuraiana Rw4G001270 Rw4G001320 Rw4G001350 Rw4G001700 Rw4G001710 Rw4G001720 Rw4G001760 Rw6G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccI GTMKAC 1 cut(s) 717
AccII CGCG 2 cut(s) 270, 792
AciI CCGC 4 cut(s) 181, 268, 429, 790
AclI AACGTT 1 cut(s) 502
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 24, 458
AcyI GRCGYC 1 cut(s) 748
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 1 cut(s) 144
AflIII ACRYGT 1 cut(s) 822
AgsI TTSAA 5 cut(s) 127, 247, 295, 334, 344
AjiI CACGTC 1 cut(s) 823
AjnI CCWGG 2 cut(s) 137, 326
AluBI AGCT 3 cut(s) 76, 649, 675
AluI AGCT 3 cut(s) 76, 649, 675
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 3 cut(s) 87, 139, 623
AlwI GGATC 1 cut(s) 112
AlwNI CAGNNNCTG 1 cut(s) 144
AoxI GGCC 2 cut(s) 60, 355
ApeKI GCWGC 4 cut(s) 30, 47, 869, 872
ApoI RAATTY 2 cut(s) 24, 458
Asp700I GAANNNNTTC 2 cut(s) 75, 290
AspLEI GCGC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 329, 543, 830
BalI TGGCCA 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 704
BbvI GCAGC 4 cut(s) 17, 59, 856, 859
BccI CCATC 3 cut(s) 286, 314, 788
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 2 cut(s) 139, 328
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 3 cut(s) 87, 139, 623
BfaI CTAG 3 cut(s) 222, 381, 507
BglII AGATCT 1 cut(s) 204
BisI GCNGC 5 cut(s) 31, 48, 181, 870, 873
BlsI GCNGC 5 cut(s) 32, 49, 182, 871, 874
Bme1390I CCNGG 3 cut(s) 139, 168, 328
BmgBI CACGTC 1 cut(s) 823
BmiI GGNNCC 3 cut(s) 102, 325, 660
BmrFI CCNGG 3 cut(s) 139, 168, 328
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 3 cut(s) 87, 121, 310
BpuEI CTTGAG 1 cut(s) 618
BpuMI CCSGG 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 2 cut(s) 139, 328
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 98, 618, 667
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 4 cut(s) 17, 59, 856, 859
BseYI CCCAGC 1 cut(s) 671
Bsh1236I CGCG 2 cut(s) 270, 792
BshFI GGCC 2 cut(s) 62, 357
BsiHKAI GWGCWC 1 cut(s) 704
BsiSI CCGG 2 cut(s) 168, 210
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 3 cut(s) 87, 139, 623
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 586
BsnI GGCC 2 cut(s) 62, 357
Bsp1286I GDGCHC 1 cut(s) 704
Bsp143I GATC 3 cut(s) 117, 204, 421
BspACI CCGC 4 cut(s) 181, 268, 429, 790
BspANI GGCC 2 cut(s) 62, 357
BspCNI CTCAG 3 cut(s) 97, 619, 666
BspFNI CGCG 2 cut(s) 270, 792
BspLI GGNNCC 3 cut(s) 102, 325, 660
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 252
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 3 cut(s) 117, 204, 421
BssNAI GTATAC 1 cut(s) 718
BssNI GRCGYC 1 cut(s) 748
Bst1107I GTATAC 1 cut(s) 718
Bst2UI CCWGG 2 cut(s) 139, 328
Bst4CI ACNGT 2 cut(s) 58, 722
Bst6I CTCTTC 2 cut(s) 66, 365
BstACI GRCGYC 1 cut(s) 748
BstDEI CTNAG 3 cut(s) 84, 627, 653
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 2 cut(s) 270, 792
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 120, 207, 424
BstMAI GTCTC 3 cut(s) 87, 139, 623
BstMBI GATC 3 cut(s) 117, 204, 421
BstNI CCWGG 2 cut(s) 139, 328
BstSCI CCNGG 3 cut(s) 137, 166, 326
BstUI CGCG 2 cut(s) 270, 792
BstV1I GCAGC 4 cut(s) 17, 59, 856, 859
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BstZ17I GTATAC 1 cut(s) 718
BsuRI GGCC 2 cut(s) 62, 357
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 823
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 144
CfoI GCGC 1 cut(s) 7
CseI GACGC 3 cut(s) 121, 389, 756
Csp6I GTAC 1 cut(s) 518
CviAII CATG 2 cut(s) 682, 777
CviQI GTAC 1 cut(s) 518
DdeI CTNAG 3 cut(s) 84, 627, 653
DpnI GATC 3 cut(s) 119, 206, 423
DpnII GATC 3 cut(s) 117, 204, 421
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 66, 365
EarI CTCTTC 2 cut(s) 66, 365
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 137, 326
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 2 cut(s) 685, 780
FaqI GGGAC 1 cut(s) 586
FatI CATG 2 cut(s) 681, 776
FauI CCCGC 1 cut(s) 436
FauNDI CATATG 2 cut(s) 409, 433
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 5 cut(s) 31, 48, 181, 870, 873
FokI GGATG 1 cut(s) 411
Fsp4HI GCNGC 5 cut(s) 31, 48, 181, 870, 873
FspBI CTAG 3 cut(s) 222, 381, 507
GlaI GCGC 1 cut(s) 6
GluI GCNGC 5 cut(s) 31, 48, 181, 870, 873
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 3 cut(s) 87, 121, 310
HaeIII GGCC 2 cut(s) 62, 357
HapII CCGG 2 cut(s) 168, 210
HgaI GACGC 3 cut(s) 121, 389, 756
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 748
Hin1II CATG 2 cut(s) 685, 780
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 2 cut(s) 168, 210
HphI GGTGA 3 cut(s) 329, 543, 830
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 4 cut(s) 87, 117, 163, 628
Hpy188III TCNNGA 2 cut(s) 593, 635
Hpy8I GTNNAC 1 cut(s) 718
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 8 cut(s) 253, 301, 322, 380, 552, 637, 701, 809
HpyCH4III ACNGT 2 cut(s) 58, 722
HpyCH4IV ACGT 3 cut(s) 502, 520, 822
HpyCH4V TGCA 2 cut(s) 351, 685
HpyF3I CTNAG 3 cut(s) 84, 627, 653
HpySE526I ACGT 3 cut(s) 502, 520, 822
Hsp92I GRCGYC 1 cut(s) 748
Hsp92II CATG 2 cut(s) 685, 780
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 117, 204, 421
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 5 cut(s) 106, 329, 595, 646, 699
Lsp1109I GCAGC 4 cut(s) 17, 59, 856, 859
MaeI CTAG 3 cut(s) 222, 381, 507
MaeII ACGT 3 cut(s) 502, 520, 822
MaeIII GTNAC 4 cut(s) 263, 574, 818, 825
MalI GATC 3 cut(s) 119, 206, 423
MboI GATC 3 cut(s) 117, 204, 421
MboII GAAGA 6 cut(s) 83, 214, 245, 346, 352, 658
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 704
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 24, 458
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 4 cut(s) 248, 625, 767, 855
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 3 cut(s) 49, 368, 634
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 75, 290
MscI TGGCCA 1 cut(s) 62
MseI TTAA 3 cut(s) 486, 690, 907
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 2 cut(s) 168, 210
MspR9I CCNGG 3 cut(s) 139, 168, 328
MvaI CCWGG 2 cut(s) 139, 328
MvnI CGCG 2 cut(s) 270, 792
NciI CCSGG 1 cut(s) 168
NdeI CATATG 2 cut(s) 409, 433
NdeII GATC 3 cut(s) 117, 204, 421
NlaIII CATG 2 cut(s) 685, 780
NlaIV GGNNCC 3 cut(s) 102, 325, 660
NmuCI GTSAC 3 cut(s) 263, 574, 818
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 2 cut(s) 75, 290
PfeI GAWTC 6 cut(s) 35, 286, 308, 442, 733, 801
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 5 cut(s) 32, 49, 182, 871, 874
PleI GAGTC 4 cut(s) 247, 625, 767, 855
PpsI GAGTC 4 cut(s) 247, 625, 767, 855
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 137, 326
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 2 cut(s) 137, 326
PspN4I GGNNCC 3 cut(s) 102, 325, 660
PstNI CAGNNNCTG 1 cut(s) 144
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 486, 690, 907
SatI GCNGC 5 cut(s) 31, 48, 181, 870, 873
Sau3AI GATC 3 cut(s) 117, 204, 421
SchI GAGTC 4 cut(s) 248, 625, 767, 855
ScrFI CCNGG 3 cut(s) 139, 168, 328
SduI GDGCHC 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 633
SmoI CTYRAG 1 cut(s) 633
Sse9I AATT 2 cut(s) 24, 458
SsiI CCGC 4 cut(s) 181, 268, 429, 790
SspMI CTAG 3 cut(s) 222, 381, 507
StyD4I CCNGG 3 cut(s) 137, 166, 326
TaaI ACNGT 2 cut(s) 58, 722
TaiI ACGT 3 cut(s) 505, 523, 825
TaqI TCGA 2 cut(s) 69, 200
TasI AATT 2 cut(s) 24, 458
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 6 cut(s) 35, 286, 308, 442, 733, 801
Tru1I TTAA 3 cut(s) 486, 690, 907
Tru9I TTAA 3 cut(s) 486, 690, 907
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 3 cut(s) 263, 574, 818
TseI GCWGC 4 cut(s) 30, 47, 869, 872
Tsp45I GTSAC 3 cut(s) 263, 574, 818
TspDTI ATGAA 4 cut(s) 725, 793, 828, 861
TspGWI ACGGA 2 cut(s) 110, 719
TspRI CASTG 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 24, 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 2 cut(s) 75, 290
XspI CTAG 3 cut(s) 222, 381, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.