Rh6CG331400
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
51880735 .. 51883518
2784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG331400.1

Sequence Viewer

Length: 930 bp
ATGGCCTCTGCGATGCTCAACGGGGCCGAGCATCTCACACTCCGGCGAGGTTTATCCCCAAATGGGTTGGGTTTTGTTGGGTCGGATTTTCATGGGAAGCAGTTTCTGAAGATGGGTTTGGTATCAAACACTAGAATTTCCAAGTCTGGTGCCAGAGCCATTGTGCCCAAGTGTAGTGTCTCAGCTTCCAGGCCTGCTTCTCAACCCAGGTTCATTCAGCACAAGAAAGAGGCTTTCTGGTTTTATAGGTTTCTATCAATTGTTTATGACCATGTCATAAACCCTGGGCACTGGACTGAGGACATGAGAGACGATGCACTTGAGCCAGCTGATCTTAACGACAGGAGAATGATTGTCGTAGATGTGGGTGGAGGTACTGGGTTCACCACCTTGGGGATAGTTAAGCATGTGGATGCCAAGAATGTGACCATTCTTGATCAGTCCCCCCATCAGCTAGCTAGGGCTAAGAAGAAGGCGCCTTTGAAGGAGTGCAAGATCATTGAGGGCGATGCTGAGGACTTGCCTTTTCGGACTGATTATGCGGATCGATATGTATCTGCAGGAAGTATTGAGTACTGGCCAGACCCACAGCGTGGCATCAAGGAAGCATACAGGGTCTTGAAACTTGGAGGAAAAGCATGCGTGATTGGTCCTGTGTACCCAACGTTTTGGTTATCTCGCTTCTTTGCTGATGTATGGATGCTTTTCCCCAAGGAGGAAGAGTACATTGAATGGTTCGAGAAGGCTGGATTCAAAGATGTCCAACTGAAAAGAATTGGCCCAAAATGGTACCGTGGGGTTCGCCGCCATGGATTGATAATGGGGTGTTCTGTAACAGGCGTTAAGCCTGCATCTGGGGATTCTCCTTTACAGGTAGTTTGTTTTCGAGAGCTCTTTTTTGACTTATTTCTTGATAATTATAATTGCTAG

Protein Analysis

309

Amino Acids

34.91

Weight (kDa)

9.11

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 114 - 219 9.1e-12 Methyltransferase domain
Ubie_methyltran PF01209 117 - 221 1.7e-12 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 119 - 211 1.8e-17 Methyltransferase domain
Methyltransf_11 PF08241 120 - 214 1e-19 Methyltransferase domain
Methyltransf_12 PF08242 120 - 212 6.3e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
Acc65I GGTACC 1 cut(s) 789
AccB1I GGYRCC 3 cut(s) 149, 475, 789
AccB7I CCANNNNNTGG 1 cut(s) 593
AciI CCGC 2 cut(s) 542, 805
AclI AACGTT 1 cut(s) 665
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 5 cut(s) 376, 575, 659, 725, 791
AfiI CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
AgsI TTSAA 4 cut(s) 484, 622, 731, 754
AjnI CCWGG 3 cut(s) 188, 206, 283
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 5 cut(s) 185, 329, 454, 458, 892
AluI AGCT 5 cut(s) 185, 329, 454, 458, 892
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 2 cut(s) 184, 303
AlwI GGATC 1 cut(s) 552
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 5 cut(s) 3, 24, 191, 578, 778
ApoI RAATTY 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 3 cut(s) 24, 650, 779
AsuHPI GGTGA 1 cut(s) 376
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 650
BaeGI GKGCMC 2 cut(s) 168, 291
BalI TGGCCA 1 cut(s) 580
BanI GGYRCC 3 cut(s) 149, 475, 789
BanII GRGCYC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 894
BbvCI CCTCAGC 1 cut(s) 513
BccI CCATC 2 cut(s) 106, 456
BciT130I CCWGG 3 cut(s) 190, 208, 285
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 184, 303
BfaI CTAG 4 cut(s) 132, 455, 459, 928
BfmI CTRYAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 479
BisI GCNGC 1 cut(s) 805
BlsI GCNGC 1 cut(s) 806
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 3 cut(s) 190, 208, 285
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 3 cut(s) 24, 650, 779
BmiI GGNNCC 4 cut(s) 25, 151, 477, 791
BmrFI CCNGG 3 cut(s) 190, 208, 285
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 8 cut(s) 3, 40, 304, 403, 499, 606, 690, 860
BmtI GCTAGC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 553
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 7 cut(s) 206, 283, 284, 390, 711, 793, 808
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
Bse1I ACTGG 3 cut(s) 296, 382, 581
Bse8I GATNNNNATC 1 cut(s) 553
BseBI CCWGG 3 cut(s) 190, 208, 285
BseCI ATCGAT 1 cut(s) 547
BseDI CCNNGG 7 cut(s) 206, 283, 284, 390, 711, 793, 808
BseGI GGATG 2 cut(s) 418, 705
BseJI GATNNNNATC 1 cut(s) 553
BseLI CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
BseMII CTCAG 3 cut(s) 195, 288, 504
BseNI ACTGG 3 cut(s) 296, 382, 581
BseSI GKGCMC 2 cut(s) 168, 291
BshFI GGCC 5 cut(s) 5, 26, 193, 580, 780
BshNI GGYRCC 3 cut(s) 149, 475, 789
BshVI ATCGAT 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
BsmAI GTCTC 2 cut(s) 184, 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 5 cut(s) 5, 26, 193, 580, 780
Bsp1286I GDGCHC 3 cut(s) 168, 291, 894
Bsp143I GATC 4 cut(s) 331, 436, 495, 544
Bsp19I CCATGG 1 cut(s) 808
BspACI CCGC 2 cut(s) 542, 805
BspANI GGCC 5 cut(s) 5, 26, 193, 580, 780
BspCNI CTCAG 3 cut(s) 194, 289, 505
BspDI ATCGAT 1 cut(s) 547
BspLI GGNNCC 4 cut(s) 25, 151, 477, 791
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 552
BspT107I GGYRCC 3 cut(s) 149, 475, 789
BsrI ACTGG 3 cut(s) 296, 382, 581
BssECI CCNNGG 7 cut(s) 206, 283, 284, 390, 711, 793, 808
BssMI GATC 4 cut(s) 331, 436, 495, 544
BssNI GRCGYC 1 cut(s) 476
BssT1I CCWWGG 3 cut(s) 390, 711, 808
Bst2UI CCWGG 3 cut(s) 190, 208, 285
Bst4CI ACNGT 1 cut(s) 794
Bst6I CTCTTC 1 cut(s) 714
BstACI GRCGYC 1 cut(s) 476
BstC8I GCNNGC 5 cut(s) 195, 327, 456, 640, 849
BstDEI CTNAG 4 cut(s) 181, 297, 465, 513
BstDSI CCRYGG 2 cut(s) 793, 808
BstF5I GGATG 2 cut(s) 418, 705
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 4 cut(s) 334, 439, 498, 547
BstMAI GTCTC 2 cut(s) 184, 303
BstMBI GATC 4 cut(s) 331, 436, 495, 544
BstNI CCWGG 3 cut(s) 190, 208, 285
BstNSI RCATGY 2 cut(s) 410, 642
BstSCI CCNGG 3 cut(s) 188, 206, 283
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 2 cut(s) 168, 291
BstXI CCANNNNNNTGG 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 547
BsuRI GGCC 5 cut(s) 5, 26, 193, 580, 780
BsuTUI ATCGAT 1 cut(s) 547
BtgI CCRYGG 2 cut(s) 793, 808
BtgZI GCGATG 2 cut(s) 26, 522
BtsCI GGATG 2 cut(s) 418, 705
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 5 cut(s) 195, 327, 456, 640, 849
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 3 cut(s) 24, 650, 779
ClaI ATCGAT 1 cut(s) 547
Csp6I GTAC 5 cut(s) 375, 574, 658, 724, 790
CviAII CATG 6 cut(s) 92, 272, 304, 407, 639, 809
CviQI GTAC 5 cut(s) 375, 574, 658, 724, 790
DdeI CTNAG 4 cut(s) 181, 297, 465, 513
DinI GGCGCC 1 cut(s) 477
DpnI GATC 4 cut(s) 333, 438, 497, 546
DpnII GATC 4 cut(s) 331, 436, 495, 544
DraIII CACNNNGTG 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 3 cut(s) 390, 711, 808
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 650
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 892
EcoRII CCWGG 3 cut(s) 188, 206, 283
EcoT14I CCWWGG 3 cut(s) 390, 711, 808
EcoT38I GRGCYC 1 cut(s) 894
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
ErhI CCWWGG 3 cut(s) 390, 711, 808
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 6 cut(s) 95, 275, 307, 410, 642, 812
FaqI GGGAC 1 cut(s) 427
FatI CATG 6 cut(s) 91, 271, 303, 406, 638, 808
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 2 cut(s) 425, 712
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 4 cut(s) 132, 455, 459, 928
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 805
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 5 cut(s) 5, 26, 193, 580, 780
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 6 cut(s) 95, 275, 307, 410, 642, 812
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HinfI GANTC 2 cut(s) 750, 860
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 384, 658
Hpy188I TCNGA 3 cut(s) 85, 108, 531
Hpy188III TCNNGA 5 cut(s) 434, 619, 739, 887, 911
Hpy8I GTNNAC 2 cut(s) 384, 658
HpyAV CCTTC 3 cut(s) 466, 478, 736
HpyCH4III ACNGT 1 cut(s) 794
HpyCH4IV ACGT 1 cut(s) 665
HpyCH4V TGCA 4 cut(s) 317, 492, 560, 851
HpyF3I CTNAG 4 cut(s) 181, 297, 465, 513
HpySE526I ACGT 1 cut(s) 665
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 6 cut(s) 95, 275, 307, 410, 642, 812
HspAI GCGC 1 cut(s) 476
KasI GGCGCC 1 cut(s) 475
KpnI GGTACC 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 331, 436, 495, 544
LweI GCATC 8 cut(s) 3, 40, 304, 403, 499, 606, 690, 860
MaeI CTAG 4 cut(s) 132, 455, 459, 928
MaeII ACGT 1 cut(s) 665
MaeIII GTNAC 2 cut(s) 424, 832
MalI GATC 4 cut(s) 333, 438, 497, 546
MboI GATC 4 cut(s) 331, 436, 495, 544
MboII GAAGA 3 cut(s) 121, 481, 731
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 3 cut(s) 168, 291, 894
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 5 cut(s) 135, 258, 774, 916, 922
MluNI TGGCCA 1 cut(s) 580
Mly113I GGCGCC 1 cut(s) 476
MmeI TCCRAC 2 cut(s) 63, 787
MnlI CCTC 9 cut(s) 16, 41, 223, 292, 365, 496, 508, 623, 709
Mox20I TGGCCA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 580
MseI TTAA 3 cut(s) 336, 402, 843
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 3 cut(s) 190, 208, 285
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 3 cut(s) 190, 208, 285
NarI GGCGCC 1 cut(s) 476
NcoI CCATGG 1 cut(s) 808
NdeII GATC 4 cut(s) 331, 436, 495, 544
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 6 cut(s) 95, 275, 307, 410, 642, 812
NlaIV GGNNCC 4 cut(s) 25, 151, 477, 791
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 2 cut(s) 410, 642
PaeI GCATGC 1 cut(s) 642
PasI CCCWGGG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 193
PfeI GAWTC 2 cut(s) 750, 860
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 1 cut(s) 806
PluTI GGCGCC 1 cut(s) 479
PsiI TTATAA 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 894
Psp1406I AACGTT 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 188, 206, 283
PspGI CCWGG 3 cut(s) 188, 206, 283
PspN4I GGNNCC 4 cut(s) 25, 151, 477, 791
PspPI GGNCC 3 cut(s) 24, 650, 779
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 5 cut(s) 376, 575, 659, 725, 791
RsaNI GTAC 5 cut(s) 375, 574, 658, 724, 790
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 3 cut(s) 336, 402, 843
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 4 cut(s) 331, 436, 495, 544
Sau96I GGNCC 3 cut(s) 24, 650, 779
ScaI AGTACT 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 190, 208, 285
SduI GDGCHC 3 cut(s) 168, 291, 894
SfaNI GCATC 8 cut(s) 3, 40, 304, 403, 499, 606, 690, 860
SfcI CTRYAG 1 cut(s) 558
SfoI GGCGCC 1 cut(s) 477
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 642
Sse9I AATT 5 cut(s) 135, 258, 774, 916, 922
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 2 cut(s) 542, 805
SspDI GGCGCC 1 cut(s) 475
SspMI CTAG 4 cut(s) 132, 455, 459, 928
SstI GAGCTC 1 cut(s) 894
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 188, 206, 283
StyI CCWWGG 3 cut(s) 390, 711, 808
TaaI ACNGT 1 cut(s) 794
TaiI ACGT 1 cut(s) 668
TaqI TCGA 3 cut(s) 547, 738, 886
TasI AATT 5 cut(s) 135, 258, 774, 916, 922
TatI WGTACW 2 cut(s) 573, 723
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 2 cut(s) 750, 860
Tru1I TTAA 3 cut(s) 336, 402, 843
Tru9I TTAA 3 cut(s) 336, 402, 843
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 80, 202
TspRI CASTG 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 1 cut(s) 135
XceI RCATGY 2 cut(s) 410, 642
XspI CTAG 4 cut(s) 132, 455, 459, 928
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.