Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004459.1

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Forward (+)

5464 .. 12825

Gene Structure 7362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004459.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggcgtcgtcttatctcggcgcctgtactccacgcgcctcccagttctccttacacaggcacagacaccgatgcccgatccctctcgagcaggcgcgaaccgcgccgttggccggaaacagaggagttagcttgaagaaagccgtcaagttccagaaaatcgtcgagaattcagctccggcgtacaacgaagtcgccggcgccggcgagagcattgaggagaatctggagcataagagtcaggagttcgagaggattctggaggttccgaaggaggagagggatcggattcagcgaatgcaggtcgtcgatagggagcggcggctccaagagagcggcttgaagaaggagtcccgttccagtgagccgggctcactggttcggtggcgaccatattggtgcaatggtaatacaggaagtggcgaccatatttggtggaatgccgaccatggtggtggtcatgctagtgattgtggacttgcagtagtggcaaagaggagttgtgatggtgttggtgtgactgtgacacttggtccaaaggttgaggatgtgaggaagcccgtcaatccatttgtgtttcttttccggctaattcttggagcaactgcaggagcttactatgtgctggttcccatttacatgtggatcaaagatcaaattgttccaaagggaaaacctatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

CTP_transf_like Methyltransf_11 Methyltransf_25

Protein Analysis

227

Amino Acids

25.31

Weight (kDa)

9.33

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	20, 200
AccBSI	CCGCTC	2 cut(s)	319, 336
AccII	CGCG	3 cut(s)	36, 97, 104
AciI	CCGC	4 cut(s)	102, 319, 322, 336
AclWI	GGATC	3 cut(s)	73, 291, 653
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	3 cut(s)	5, 21, 201
AfaI	GTAC	2 cut(s)	28, 185
AfiI	CCNNNNNNNGG	2 cut(s)	57, 113
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	2 cut(s)	136, 343
AhdI	GACNNNNNGTC	1 cut(s)	531
AluBI	AGCT	3 cut(s)	132, 176, 614
AluI	AGCT	3 cut(s)	132, 176, 614
AlwI	GGATC	3 cut(s)	73, 291, 653
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	5 cut(s)	23, 38, 97, 106, 203
AspS9I	GGNCC	1 cut(s)	533
AsuC2I	CCSGG	1 cut(s)	369
AvaI	CYCGRG	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	533
BanI	GGYRCC	2 cut(s)	20, 200
BanII	GRGCYC	1 cut(s)	374
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	2 cut(s)	91, 128
BcnI	CCSGG	1 cut(s)	369
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	2 cut(s)	24, 204
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	320, 323, 337
BlsI	GCNGC	3 cut(s)	321, 324, 338
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	533
BmeRI	GACNNNNNGTC	1 cut(s)	531
BmeT110I	CYCGRG	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	5 cut(s)	22, 202, 267, 326, 630
BmrFI	CCNGG	1 cut(s)	369
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	37
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	2 cut(s)	248, 281
BpuMI	CCSGG	1 cut(s)	369
BsaHI	GRCGYC	3 cut(s)	5, 21, 201
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 113
Bse118I	RCCGGY	2 cut(s)	197, 203
Bse1I	ACTGG	3 cut(s)	43, 360, 381
Bse3DI	GCAATG	1 cut(s)	409
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	57, 113
BseMI	GCAATG	1 cut(s)	409
BseNI	ACTGG	3 cut(s)	43, 360, 381
BseRI	GAGGAG	4 cut(s)	138, 233, 290, 511
Bsh1236I	CGCG	3 cut(s)	36, 97, 104
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	2 cut(s)	20, 200
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	6 cut(s)	114, 179, 198, 204, 368, 586
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	2 cut(s)	57, 113
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	2 cut(s)	303, 445
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	4 cut(s)	78, 283, 645, 652
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	4 cut(s)	102, 319, 322, 336
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	3 cut(s)	36, 97, 104
BspLI	GGNNCC	5 cut(s)	22, 202, 267, 326, 630
BspMAI	CTGCAG	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	3 cut(s)	73, 291, 653
BspT107I	GGYRCC	2 cut(s)	20, 200
BsrBI	CCGCTC	2 cut(s)	319, 336
BsrDI	GCAATG	1 cut(s)	409
BsrFI	RCCGGY	2 cut(s)	197, 203
BsrI	ACTGG	3 cut(s)	43, 360, 381
BssAI	RCCGGY	2 cut(s)	197, 203
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	4 cut(s)	78, 283, 645, 652
BssNI	GRCGYC	3 cut(s)	5, 21, 201
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	523
BstACI	GRCGYC	3 cut(s)	5, 21, 201
BstC8I	GCNNGC	3 cut(s)	93, 199, 205
BstDSI	CCRYGG	1 cut(s)	448
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	553
BstFNI	CGCG	3 cut(s)	36, 97, 104
BstH2I	RGCGCY	2 cut(s)	24, 204
BstHHI	GCGC	5 cut(s)	23, 38, 97, 106, 203
BstKTI	GATC	4 cut(s)	81, 286, 648, 655
BstMBI	GATC	4 cut(s)	78, 283, 645, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 103, 110, 488
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	3 cut(s)	36, 97, 104
BstXI	CCANNNNNNTGG	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	367, 374
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	93, 199, 205
CfoI	GCGC	5 cut(s)	23, 38, 97, 106, 203
Cfr10I	RCCGGY	2 cut(s)	197, 203
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	27, 184
CviAII	CATG	3 cut(s)	449, 461, 640
CviQI	GTAC	2 cut(s)	27, 184
DinI	GGCGCC	2 cut(s)	22, 202
DpnI	GATC	4 cut(s)	80, 285, 647, 654
DpnII	GATC	4 cut(s)	78, 283, 645, 652
DriI	GACNNNNNGTC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	374
EgeI	GGCGCC	2 cut(s)	22, 202
EheI	GGCGCC	2 cut(s)	22, 202
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	3 cut(s)	452, 464, 643
FaiI	YATR	7 cut(s)	234, 394, 429, 450, 462, 621, 641
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	3 cut(s)	448, 460, 639
Fnu4HI	GCNGC	3 cut(s)	320, 323, 337
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	320, 323, 337
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	5 cut(s)	22, 37, 96, 105, 202
GluI	GCNGC	3 cut(s)	320, 323, 337
GsuI	CTGGAG	2 cut(s)	248, 281
HaeII	RGCGCY	2 cut(s)	24, 204
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	6 cut(s)	114, 179, 198, 204, 368, 586
HhaI	GCGC	5 cut(s)	23, 38, 97, 106, 203
Hin1I	GRCGYC	3 cut(s)	5, 21, 201
Hin1II	CATG	3 cut(s)	452, 464, 643
Hin6I	GCGC	5 cut(s)	21, 36, 95, 104, 201
HinP1I	GCGC	5 cut(s)	21, 36, 95, 104, 201
HinfI	GANTC	5 cut(s)	223, 238, 256, 289, 350
HpaII	CCGG	6 cut(s)	114, 179, 198, 204, 368, 586
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	3 cut(s)	270, 288, 683
Hpy188III	TCNNGA	7 cut(s)	86, 154, 166, 227, 242, 250, 260
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	3 cut(s)	10, 167, 311
HpyAV	CCTTC	2 cut(s)	265, 340
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	301, 402, 482, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 103, 110, 488
Hsp92I	GRCGYC	3 cut(s)	5, 21, 201
Hsp92II	CATG	3 cut(s)	452, 464, 643
HspAI	GCGC	5 cut(s)	21, 36, 95, 104, 201
KasI	GGCGCC	2 cut(s)	20, 200
KroI	GCCGGC	2 cut(s)	197, 203
KroNI	GCCGGC	2 cut(s)	199, 205
Kzo9I	GATC	4 cut(s)	78, 283, 645, 652
LmnI	GCTCC	6 cut(s)	181, 229, 316, 330, 599, 611
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	2 cut(s)	517, 523
MalI	GATC	4 cut(s)	80, 285, 647, 654
MbiI	CCGCTC	2 cut(s)	319, 336
MboI	GATC	4 cut(s)	78, 283, 645, 652
MboII	GAAGA	2 cut(s)	148, 355
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	3 cut(s)	169, 591, 657
Mly113I	GGCGCC	2 cut(s)	21, 201
MlyI	GAGTC	2 cut(s)	247, 359
MreI	CGCCGGCG	2 cut(s)	197, 203
MroNI	GCCGGC	2 cut(s)	197, 203
MslI	CAYNNNNRTG	4 cut(s)	397, 453, 465, 638
MspI	CCGG	6 cut(s)	114, 179, 198, 204, 368, 586
MspR9I	CCNGG	1 cut(s)	369
Mva1269I	GAATGC	2 cut(s)	303, 445
MvnI	CGCG	3 cut(s)	36, 97, 104
MwoI	GCNNNNNNNGC	4 cut(s)	101, 103, 110, 488
NaeI	GCCGGC	2 cut(s)	199, 205
NarI	GGCGCC	2 cut(s)	21, 201
NciI	CCSGG	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	4 cut(s)	78, 283, 645, 652
NgoMIV	GCCGGC	2 cut(s)	197, 203
NlaIII	CATG	3 cut(s)	452, 464, 643
NlaIV	GGNNCC	5 cut(s)	22, 202, 267, 326, 630
NmuCI	GTSAC	2 cut(s)	517, 523
NspI	RCATGY	1 cut(s)	643
PaeR7I	CTCGAG	1 cut(s)	86
PciI	ACATGT	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PctI	GAATGC	2 cut(s)	303, 445
PdiI	GCCGGC	2 cut(s)	199, 205
PfeI	GAWTC	3 cut(s)	223, 256, 289
PkrI	GCNGC	3 cut(s)	321, 324, 338
PleI	GAGTC	2 cut(s)	246, 358
PluTI	GGCGCC	2 cut(s)	24, 204
PpsI	GAGTC	2 cut(s)	246, 358
PscI	ACATGT	1 cut(s)	639
PspN4I	GGNNCC	5 cut(s)	22, 202, 267, 326, 630
PspPI	GGNCC	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	610
RsaI	GTAC	2 cut(s)	28, 185
RsaNI	GTAC	2 cut(s)	27, 184
RseI	CAYNNNNRTG	4 cut(s)	397, 453, 465, 638
SatI	GCNGC	3 cut(s)	320, 323, 337
Sau3AI	GATC	4 cut(s)	78, 283, 645, 652
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	2 cut(s)	247, 359
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	7 cut(s)	134, 178, 267, 306, 543, 616, 679
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	606
SfoI	GGCGCC	2 cut(s)	22, 202
Sfr274I	CTCGAG	1 cut(s)	86
SgrAI	CRCCGGYG	2 cut(s)	197, 203
SinI	GGWCC	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	4 cut(s)	397, 453, 465, 638
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	169, 591, 657
SsiI	CCGC	4 cut(s)	102, 319, 322, 336
SspDI	GGCGCC	2 cut(s)	20, 200
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	4 cut(s)	87, 165, 249, 309
TasI	AATT	3 cut(s)	169, 591, 657
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	3 cut(s)	322, 325, 339
TfiI	GAWTC	3 cut(s)	223, 256, 289
TscAI	CASTG	2 cut(s)	367, 381
TseFI	GTSAC	2 cut(s)	517, 523
Tsp45I	GTSAC	2 cut(s)	517, 523
TspRI	CASTG	2 cut(s)	367, 381
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.