Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Reverse (-)

3213264 .. 3215583

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTATTTCAATGCTTTATGGGGCTCAAAATATGAAACTCACTTCAGGCATAGCACCAACTGGGTTAGGGTCTTTCCCCAAAAAGGTTTCAGTTAGTTATGGAAGGAATTCCAAGGCTAGAACTTTGGGACCCATATGCAGTGTTTCATCCTCAAGGCCTGCTTCTCAACCTAGGTTCATACAGCACAAGCAAGAAGCATTTTGGTTCTACAGGTTTTTATCTATAGTCTATGATCATGTGATAAACCCTGGGCATTGGACTGAGGATATGAGAGACGATGCTCTCGAGCCGGCTGATCTTTATGACAGGAATATGACAGTGGTAGATGTTGGAGGTGGAACTGGGTTCACAACACTGGGGATTGTGAAGCATGTGGATGCCAAAAATGTTACAATTCTTGACCAATCACCGCACCAGCTTGCCAAGGCTAAGGAGAAGGAGCCCTTGAAAGAGTGCAAGATTATTGAAGGTGATGCCGAGGATCTGCCATTCCCAACTGATTATGCCGATAGATATGTCTCTGCTGGAAGTATAGAGTACTGGCCGGATCCACAGCGTGGAATCAAGGAAGCATACAGGGTACTAAAAATAGGAGGAAAAGCCTGTCTTATAGGCCCTGTGTACCCAACCTTCTGGCTGTCTCGTTTTTTCGCAGACGTGTGGATGCTCTTCCCAACAGAGGAAGAATACATTGAGTGGTTCCAAAAGGCTGGTTTCAAAGATATTAAACTAAAAAGAATTGGTCCAAAGTGGTACCGTGGAGTTCGCCGGCATGGCCTTATTATGGGTTGCTCTGTGACAGGTGTGAAGCCCTTAAGTGGGGATTCCCCTCTCGAGCTTGGTCCAAAGGTTGAGGATGTGAGGAAGCCTGTCAATCCATTTGTGTTTCTTTTCCGGCTAATTCTTGGAGCAACTGCAGGAGCTTACTATGTGCTGGTTCCCATTTACATGTGGATCAAAGATCAAATTGTTCCAAAGGGAAAACCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

CTP_transf_like Methyltransf_11 Methyltransf_25

Protein Analysis

331

Amino Acids

37.23

Weight (kDa)

9.12

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	102 - 244	8.6e-06	Methyltransferase domain
Methyltransf_31	PF13847	103 - 207	1.4e-12	Methyltransferase domain
Ubie_methyltran	PF01209	104 - 204	3.3e-12	ubiE/COQ5 methyltransferase family
Methyltransf_25	PF13649	108 - 200	3.7e-17	Methyltransferase domain
Methyltransf_11	PF08241	109 - 203	1.3e-19	Methyltransferase domain
Methyltransf_12	PF08242	109 - 201	2.1e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	756
AccB1I	GGYRCC	1 cut(s)	756
AccB7I	CCANNNNNTGG	1 cut(s)	560
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	4 cut(s)	492, 545, 558, 965
AcoI	YGGCCR	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	30
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	4 cut(s)	542, 585, 626, 758
AfiI	CCNNNNNNNGG	6 cut(s)	85, 560, 682, 787, 821, 822
AflII	CTTAAG	1 cut(s)	817
AflIII	ACRYGT	2 cut(s)	660, 951
AgsI	TTSAA	4 cut(s)	12, 451, 470, 721
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	421, 841, 926
AluI	AGCT	3 cut(s)	421, 841, 926
Alw26I	GTCTC	3 cut(s)	270, 526, 648
AlwI	GGATC	4 cut(s)	492, 545, 558, 965
Ama87I	CYCGRG	2 cut(s)	287, 836
AoxI	GGCC	4 cut(s)	158, 545, 616, 778
ApoI	RAATTY	1 cut(s)	109
Asp700I	GAANNNNTTC	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	756
AspA2I	CCTAGG	1 cut(s)	173
AspS9I	GGNCC	4 cut(s)	131, 617, 746, 845
AsuHPI	GGTGA	2 cut(s)	402, 485
AvaI	CYCGRG	2 cut(s)	287, 836
AvaII	GGWCC	3 cut(s)	131, 746, 845
AvrII	CCTAGG	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	2 cut(s)	28, 447
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	270, 526, 648
BfaI	CTAG	2 cut(s)	120, 174
BfmI	CTRYAG	3 cut(s)	211, 225, 918
BfrI	CTTAAG	1 cut(s)	817
BglI	GCCNNNNNGGC	1 cut(s)	777
BlnI	CCTAGG	1 cut(s)	173
BmcAI	AGTACT	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	3 cut(s)	131, 746, 845
BmeT110I	CYCGRG	2 cut(s)	287, 836
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	4 cut(s)	131, 617, 746, 845
BmiI	GGNNCC	7 cut(s)	132, 133, 444, 552, 704, 758, 942
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	3 cut(s)	72, 354, 368
BmsI	GCATC	4 cut(s)	271, 370, 466, 657
BmuI	ACTGGG	3 cut(s)	72, 354, 368
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	139
BsaJI	CCNNGG	7 cut(s)	114, 173, 250, 251, 426, 480, 760
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 560, 682, 787, 821, 822
Bse118I	RCCGGY	2 cut(s)	292, 771
Bse1I	ACTGG	4 cut(s)	67, 349, 363, 548
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	7 cut(s)	114, 173, 250, 251, 426, 480, 760
BseGI	GGATG	4 cut(s)	149, 385, 672, 865
BseLI	CCNNNNNNNGG	6 cut(s)	85, 560, 682, 787, 821, 822
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	4 cut(s)	67, 349, 363, 548
BshFI	GGCC	4 cut(s)	160, 547, 618, 780
BshNI	GGYRCC	1 cut(s)	756
BsiHKCI	CYCGRG	2 cut(s)	287, 836
BsiSI	CCGG	4 cut(s)	293, 548, 772, 898
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	6 cut(s)	85, 560, 682, 787, 821, 822
BsmAI	GTCTC	3 cut(s)	270, 526, 648
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	160, 547, 618, 780
BsoBI	CYCGRG	2 cut(s)	287, 836
Bsp1286I	GDGCHC	2 cut(s)	28, 447
Bsp143I	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	4 cut(s)	160, 547, 618, 780
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	7 cut(s)	132, 133, 444, 552, 704, 758, 942
BspMAI	CTGCAG	1 cut(s)	922
BspPI	GGATC	4 cut(s)	492, 545, 558, 965
BspQI	GCTCTTC	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	756
BspTI	CTTAAG	1 cut(s)	817
BsrFI	RCCGGY	2 cut(s)	292, 771
BsrI	ACTGG	4 cut(s)	67, 349, 363, 548
BssAI	RCCGGY	2 cut(s)	292, 771
BssECI	CCNNGG	7 cut(s)	114, 173, 250, 251, 426, 480, 760
BssMI	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
BssT1I	CCWWGG	3 cut(s)	114, 173, 426
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	322, 761
Bst6I	CTCTTC	1 cut(s)	677
BstAFI	CTTAAG	1 cut(s)	817
BstC8I	GCNNGC	4 cut(s)	162, 294, 423, 773
BstDEI	CTNAG	2 cut(s)	264, 432
BstDSI	CCRYGG	1 cut(s)	760
BstF5I	GGATG	4 cut(s)	149, 385, 672, 865
BstKTI	GATC	6 cut(s)	238, 301, 487, 553, 960, 967
BstMAI	GTCTC	3 cut(s)	270, 526, 648
BstMBI	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	777
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	377, 955
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	3 cut(s)	211, 225, 918
BstX2I	RGATCY	2 cut(s)	484, 550
BstXI	CCANNNNNNTGG	2 cut(s)	636, 713
BstYI	RGATCY	2 cut(s)	484, 550
BsuRI	GGCC	4 cut(s)	160, 547, 618, 780
BtgI	CCRYGG	1 cut(s)	760
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	4 cut(s)	149, 385, 672, 865
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	148, 327, 356
Cac8I	GCNNGC	4 cut(s)	162, 294, 423, 773
Cfr10I	RCCGGY	2 cut(s)	292, 771
Cfr13I	GGNCC	4 cut(s)	131, 617, 746, 845
Csp6I	GTAC	4 cut(s)	541, 584, 625, 757
CviAII	CATG	4 cut(s)	239, 374, 776, 952
CviQI	GTAC	4 cut(s)	541, 584, 625, 757
DdeI	CTNAG	2 cut(s)	264, 432
DpnI	GATC	6 cut(s)	237, 300, 486, 552, 959, 966
DpnII	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
DraIII	CACNNNGTG	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	3 cut(s)	114, 173, 426
Eco147I	AGGCCT	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	28, 447
Eco47I	GGWCC	3 cut(s)	131, 746, 845
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	2 cut(s)	287, 836
EcoO109I	RGGNCCY	2 cut(s)	131, 617
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	3 cut(s)	114, 173, 426
EcoT38I	GRGCYC	2 cut(s)	28, 447
ErhI	CCWWGG	3 cut(s)	114, 173, 426
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	4 cut(s)	242, 377, 779, 955
FalI	AAGNNNNNCTT	6 cut(s)	148, 180, 431, 463, 594, 626
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	4 cut(s)	238, 373, 775, 951
FauNDI	CATATG	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	235
FokI	GGATG	4 cut(s)	136, 392, 679, 872
FriOI	GRGCYC	2 cut(s)	28, 447
FspBI	CTAG	2 cut(s)	120, 174
HaeIII	GGCC	4 cut(s)	160, 547, 618, 780
HapII	CCGG	4 cut(s)	293, 548, 772, 898
Hin1II	CATG	4 cut(s)	242, 377, 779, 955
HinfI	GANTC	2 cut(s)	564, 827
HpaII	CCGG	4 cut(s)	293, 548, 772, 898
HphI	GGTGA	2 cut(s)	402, 485
Hpy166II	GTNNAC	2 cut(s)	351, 625
Hpy188I	TCNGA	1 cut(s)	995
Hpy188III	TCNNGA	3 cut(s)	287, 401, 836
Hpy8I	GTNNAC	2 cut(s)	351, 625
HpyAV	CCTTC	4 cut(s)	99, 433, 464, 643
HpyCH4III	ACNGT	2 cut(s)	322, 761
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	3 cut(s)	141, 459, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	777
HpyF3I	CTNAG	2 cut(s)	264, 432
HpySE526I	ACGT	1 cut(s)	660
Hsp92II	CATG	4 cut(s)	242, 377, 779, 955
KflI	GGGWCCC	1 cut(s)	131
KpnI	GGTACC	1 cut(s)	760
KroI	GCCGGC	2 cut(s)	292, 771
KroNI	GCCGGC	2 cut(s)	294, 773
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	3 cut(s)	442, 911, 923
LweI	GCATC	4 cut(s)	271, 370, 466, 657
MaeI	CTAG	2 cut(s)	120, 174
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	2 cut(s)	391, 799
MalI	GATC	6 cut(s)	237, 300, 486, 552, 959, 966
MboI	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
MboII	GAAGA	2 cut(s)	664, 698
MflI	RGATCY	2 cut(s)	484, 550
MhlI	GDGCHC	2 cut(s)	28, 447
MluCI	AATT	5 cut(s)	109, 396, 741, 903, 969
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	9 cut(s)	163, 259, 329, 475, 590, 676, 843, 850, 858
MroNI	GCCGGC	2 cut(s)	292, 771
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	2 cut(s)	729, 818
MslI	CAYNNNNRTG	2 cut(s)	378, 950
MspCI	CTTAAG	1 cut(s)	817
MspI	CCGG	4 cut(s)	293, 548, 772, 898
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	777
NaeI	GCCGGC	2 cut(s)	294, 773
NdeI	CATATG	1 cut(s)	137
NdeII	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
NgoMIV	GCCGGC	2 cut(s)	292, 771
NlaIII	CATG	4 cut(s)	242, 377, 779, 955
NlaIV	GGNNCC	7 cut(s)	132, 133, 444, 552, 704, 758, 942
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	2 cut(s)	377, 955
PaeR7I	CTCGAG	2 cut(s)	287, 836
PasI	CCCWGGG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	160
PciI	ACATGT	1 cut(s)	951
PciSI	GCTCTTC	1 cut(s)	677
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdiI	GCCGGC	2 cut(s)	294, 773
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	564, 827
PflMI	CCANNNNNTGG	1 cut(s)	560
PpuMI	RGGWCCY	1 cut(s)	131
PscI	ACATGT	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	7 cut(s)	132, 133, 444, 552, 704, 758, 942
PspPI	GGNCC	4 cut(s)	131, 617, 746, 845
PspPPI	RGGWCCY	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	922
PsuI	RGATCY	2 cut(s)	484, 550
RsaI	GTAC	4 cut(s)	542, 585, 626, 758
RsaNI	GTAC	4 cut(s)	541, 584, 625, 757
RseI	CAYNNNNRTG	2 cut(s)	378, 950
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	729, 818
Sau3AI	GATC	6 cut(s)	235, 298, 484, 550, 957, 964
Sau96I	GGNCC	4 cut(s)	131, 617, 746, 845
ScaI	AGTACT	1 cut(s)	542
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	28, 447
SfaNI	GCATC	4 cut(s)	271, 370, 466, 657
SfcI	CTRYAG	3 cut(s)	211, 225, 918
Sfr274I	CTCGAG	2 cut(s)	287, 836
SinI	GGWCC	3 cut(s)	131, 746, 845
SlaI	CTCGAG	2 cut(s)	287, 836
SmiMI	CAYNNNNRTG	2 cut(s)	378, 950
SmlI	CTYRAG	4 cut(s)	154, 287, 817, 836
SmoI	CTYRAG	4 cut(s)	154, 287, 817, 836
Sse9I	AATT	5 cut(s)	109, 396, 741, 903, 969
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	2 cut(s)	120, 174
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	3 cut(s)	114, 173, 426
TaaI	ACNGT	2 cut(s)	322, 761
TaiI	ACGT	1 cut(s)	663
TaqI	TCGA	2 cut(s)	288, 837
TasI	AATT	5 cut(s)	109, 396, 741, 903, 969
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	564, 827
Tru1I	TTAA	2 cut(s)	729, 818
Tru9I	TTAA	2 cut(s)	729, 818
TscAI	CASTG	3 cut(s)	148, 327, 363
TseFI	GTSAC	1 cut(s)	799
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	3 cut(s)	50, 138, 169
TspRI	CASTG	3 cut(s)	148, 327, 363
Van91I	CCANNNNNTGG	1 cut(s)	560
Vha464I	CTTAAG	1 cut(s)	817
VpaK11BI	GGWCC	3 cut(s)	131, 746, 845
XapI	RAATTY	1 cut(s)	109
XceI	RCATGY	2 cut(s)	377, 955
XhoI	CTCGAG	2 cut(s)	287, 836
XmaJI	CCTAGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	2 cut(s)	120, 174
ZrmI	AGTACT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.