Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Reverse (-)

32932790 .. 32933041

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGACGCTAGAAACCCTAAGCGTATGACCAAGGCTTCTGCCCAAACTCAACGCACTGCTGCCCCTCCAACCATGGACGATGTCACTGCCTCCCTCGCCCTAGCAACCAACGAGGTCGTGGACCTCTCCCGATCAACCAATGCGGCAACGAGTCGTGGCATGCAATCCTACTTGCTAGCCCAACCACTTGCTGCAAAAAACTGTGCCTTTGCAAGACCTCCGGCTTTTTCTCCGTCAGATTTGGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0010189 GO:0010236 GO:0016020 GO:0016740 GO:0016741 GO:0018130 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032259 GO:0042170 GO:0042180 GO:0042181 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051741 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25

Protein Analysis

83

Amino Acids

8.72

Weight (kDa)

9.62

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	59, 191
AspS9I	GGNCC	2 cut(s)	121, 245
AsuNHI	GCTAGC	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	121, 245
BbvI	GCAGC	2 cut(s)	46, 178
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BfaI	CTAG	3 cut(s)	9, 101, 176
BisI	GCNGC	3 cut(s)	60, 144, 192
BlsI	GCNGC	3 cut(s)	61, 145, 193
Bme18I	GGWCC	2 cut(s)	121, 245
BmgT120I	GGNCC	2 cut(s)	121, 245
BmiI	GGNNCC	1 cut(s)	246
BmtI	GCTAGC	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	30, 72
BseDI	CCNNGG	2 cut(s)	30, 72
BseXI	GCAGC	2 cut(s)	46, 178
BsiSI	CCGG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	246
BspOI	GCTAGC	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	30, 72
BssMI	GATC	1 cut(s)	131
BssT1I	CCWWGG	2 cut(s)	30, 72
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	161, 177
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	46, 178
BtgI	CCRYGG	1 cut(s)	72
BtsI	GCAGTG	2 cut(s)	54, 84
BtsIMutI	CAGTG	2 cut(s)	54, 84
Cac8I	GCNNGC	2 cut(s)	161, 177
Cfr13I	GGNCC	2 cut(s)	121, 245
CseI	GACGC	1 cut(s)	14
CviAII	CATG	2 cut(s)	73, 160
CviJI	RGCY	3 cut(s)	35, 179, 224
CviKI_1	RGCY	3 cut(s)	35, 179, 224
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	30, 72
Eco47I	GGWCC	2 cut(s)	121, 245
EcoO109I	RGGNCCY	1 cut(s)	245
EcoT14I	CCWWGG	2 cut(s)	30, 72
ErhI	CCWWGG	2 cut(s)	30, 72
FaeI	CATG	2 cut(s)	76, 163
FaiI	YATR	3 cut(s)	26, 74, 161
FatI	CATG	2 cut(s)	72, 159
Fnu4HI	GCNGC	3 cut(s)	60, 144, 192
Fsp4HI	GCNGC	3 cut(s)	60, 144, 192
FspBI	CTAG	3 cut(s)	9, 101, 176
GluI	GCNGC	3 cut(s)	60, 144, 192
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	76, 163
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	163, 194, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	76, 163
Kzo9I	GATC	1 cut(s)	131
LpnPI	CCDG	1 cut(s)	234
Lsp1109I	GCAGC	2 cut(s)	46, 178
MaeI	CTAG	3 cut(s)	9, 101, 176
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	75, 100, 104, 106, 134, 228
MspI	CCGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	131
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	76, 163
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	61, 145, 193
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	121, 245
PspPPI	RGGWCCY	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	80
SatI	GCNGC	3 cut(s)	60, 144, 192
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	121, 245
SchI	GAGTC	1 cut(s)	160
SetI	ASST	3 cut(s)	117, 126, 220
SinI	GGWCC	2 cut(s)	121, 245
SphI	GCATGC	1 cut(s)	163
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	3 cut(s)	9, 101, 176
StyI	CCWWGG	2 cut(s)	30, 72
TaaI	ACNGT	1 cut(s)	203
TauI	GCSGC	1 cut(s)	146
TscAI	CASTG	2 cut(s)	61, 91
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	59, 191
Tsp45I	GTSAC	1 cut(s)	82
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	61, 91
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	121, 245
XceI	RCATGY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XspI	CTAG	3 cut(s)	9, 101, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.