pycom03g20360
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
20860186 .. 20861762
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20360.1

Sequence Viewer

Length: 909 bp
ATGTGCCCAGATGCAGCAGCAGCAGCATCTCGGCTCCTCGGCCAGCTTCCCAGCCGAGGTTTATTCGGCACAAGAAGGAGGCTTTCTGGTTCTACTGATTCCTCTCAATTGTGTATGATCGATCCTATAAACCCCGGGCATTGGACTGAGGACATGAGGGACGAGGCGCTTGAGCCGGCGGAGCTCACTGATCGGAGAATGATTGTGGTGGATGTTGGTGGCGGCACAGGGTTCACCACTCTGGGGATTGTGAAGCATGTGGATGCCAAGAATGTCACCATTCTTGACCAGTCACCTCATCAGCTTGCCAAGGCTAAGCAGAAGGAGCCCTTGAAGGAGTGCAGGATTATTGAGGGTGATGCTGAGGACCTCCCTTTTCGAACTGATTATGCTGATCGATATGTGTCTGCTGGGAGCGAGTACTGGCCAGACCCGCAGCATGGCATCAAGGAAGCATACAGGGTCCTAAAACTCGGAGGAAAAGCATGCGTAATTGGTCCTGTGTACCCAACATTTTGGTTATCTCGCTTCTTTGCCGATGTATGGATGCTTTTCCCAAAGGAGGAAGAGTACATTGAGTGGTTCCAGAAGGCAGGGTTTAAAGATGTCCAGCTGAAAAGAATTGGCCCAAAATGGTATCGTGGGGTTCGCCGCCATGGATTGATCATGGGATGTTCTGTAACAGGCATTAAACCTGCATCTGGGGATTCTCCTTTACAGCTTGGTCCGAAAGCAGAGGACGTGACAAAGCCGGTAAATCCATGGTCGTTCTTCGTGCGGTTCATGTTGGGCGTCATGGCAGCAACATACATGTGCTGGTGCCTGTATACATGTGGCTCAAAGATCAAATTGTACCCAAAGGCCAGCCAATCTGAGAGAGAGTTGTTGCCTTTCTGGTTTTACTACTAG

Protein Analysis

303

Amino Acids

34.12

Weight (kDa)

8.52

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 65 - 168 5.2e-09 Methyltransferase domain
Ubie_methyltran PF01209 67 - 167 4.2e-12 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 69 - 160 1.9e-15 Methyltransferase domain
Methyltransf_11 PF08241 70 - 163 3.2e-16 Methyltransferase domain
Methyltransf_12 PF08242 70 - 161 7.4e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccB1I GGYRCC 1 cut(s) 819
AccI GTMKAC 1 cut(s) 827
AciI CCGC 5 cut(s) 179, 222, 434, 652, 778
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 2 cut(s) 40, 425
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 4 cut(s) 422, 506, 572, 854
AfiI CCNNNNNNNGG 7 cut(s) 56, 141, 243, 440, 543, 562, 701
AflIII ACRYGT 2 cut(s) 810, 830
AgsI TTSAA 1 cut(s) 334
AjiI CACGTC 1 cut(s) 742
AluBI AGCT 5 cut(s) 46, 184, 304, 613, 721
AluI AGCT 5 cut(s) 46, 184, 304, 613, 721
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 40, 425, 625, 861
ApeKI GCWGC 6 cut(s) 14, 17, 20, 23, 436, 800
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 5 cut(s) 367, 463, 497, 626, 725
AsuC2I CCSGG 2 cut(s) 135, 136
AsuHPI GGTGA 4 cut(s) 226, 268, 285, 368
AsuII TTCGAA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 4 cut(s) 367, 463, 497, 725
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 427
BanI GGYRCC 1 cut(s) 819
BanII GRGCYC 2 cut(s) 186, 330
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 6 cut(s) 26, 29, 32, 35, 448, 812
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 2 cut(s) 135, 136
BfaI CTAG 1 cut(s) 907
BfoI RGCGCY 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 8 cut(s) 15, 18, 21, 24, 223, 437, 652, 801
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 8 cut(s) 16, 19, 22, 25, 224, 438, 653, 802
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 135, 136
Bme18I GGWCC 4 cut(s) 367, 463, 497, 725
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 5 cut(s) 367, 463, 497, 626, 725
BmiI GGNNCC 5 cut(s) 35, 327, 464, 584, 821
BmrFI CCNGG 2 cut(s) 135, 136
BmsI GCATC 6 cut(s) 35, 253, 349, 453, 537, 707
Bpu10I CCTNAGC 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 135, 136
Bsa29I ATCGAT 2 cut(s) 120, 397
BsaHI GRCGYC 1 cut(s) 792
BsaJI CCNNGG 7 cut(s) 37, 55, 133, 134, 309, 655, 761
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 141, 243, 440, 543, 562, 701
Bse118I RCCGGY 2 cut(s) 175, 751
Bse1I ACTGG 2 cut(s) 289, 428
BseCI ATCGAT 2 cut(s) 120, 397
BseDI CCNNGG 7 cut(s) 37, 55, 133, 134, 309, 655, 761
BseGI GGATG 4 cut(s) 217, 268, 552, 677
BseLI CCNNNNNNNGG 7 cut(s) 56, 141, 243, 440, 543, 562, 701
BseMII CTCAG 3 cut(s) 138, 354, 864
BseNI ACTGG 2 cut(s) 289, 428
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 6 cut(s) 26, 29, 32, 35, 448, 812
BseYI CCCAGC 2 cut(s) 50, 410
BsgI GTGCAG 1 cut(s) 361
BshFI GGCC 4 cut(s) 42, 427, 627, 863
BshNI GGYRCC 1 cut(s) 819
BshVI ATCGAT 2 cut(s) 120, 397
BsiHKAI GWGCWC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 135, 176, 752
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 7 cut(s) 56, 141, 243, 440, 543, 562, 701
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 4 cut(s) 42, 427, 627, 863
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 379
Bsp1286I GDGCHC 3 cut(s) 8, 186, 330
Bsp143I GATC 6 cut(s) 117, 121, 190, 394, 663, 843
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 2 cut(s) 655, 761
BspACI CCGC 5 cut(s) 179, 222, 434, 652, 778
BspANI GGCC 4 cut(s) 42, 427, 627, 863
BspCNI CTCAG 3 cut(s) 139, 355, 865
BspDI ATCGAT 2 cut(s) 120, 397
BspLI GGNNCC 5 cut(s) 35, 327, 464, 584, 821
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 819
BsrFI RCCGGY 2 cut(s) 175, 751
BsrI ACTGG 2 cut(s) 289, 428
BssAI RCCGGY 2 cut(s) 175, 751
BssECI CCNNGG 7 cut(s) 37, 55, 133, 134, 309, 655, 761
BssMI GATC 6 cut(s) 117, 121, 190, 394, 663, 843
BssNAI GTATAC 1 cut(s) 828
BssNI GRCGYC 1 cut(s) 792
BssT1I CCWWGG 3 cut(s) 309, 655, 761
Bst1107I GTATAC 1 cut(s) 828
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 792
BstBI TTCGAA 1 cut(s) 379
BstC8I GCNNGC 5 cut(s) 44, 177, 306, 487, 865
BstDEI CTNAG 4 cut(s) 147, 315, 363, 873
BstDSI CCRYGG 2 cut(s) 655, 761
BstF5I GGATG 4 cut(s) 217, 268, 552, 677
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 6 cut(s) 120, 124, 193, 397, 666, 846
BstMBI GATC 6 cut(s) 117, 121, 190, 394, 663, 843
BstMWI GCNNNNNNNGC 5 cut(s) 20, 23, 181, 325, 433
BstNSI RCATGY 4 cut(s) 260, 489, 814, 834
BstSCI CCNGG 2 cut(s) 133, 134
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 6 cut(s) 26, 29, 32, 35, 448, 812
BstXI CCANNNNNNTGG 1 cut(s) 516
BstZ17I GTATAC 1 cut(s) 828
Bsu15I ATCGAT 2 cut(s) 120, 397
BsuRI GGCC 4 cut(s) 42, 427, 627, 863
BsuTUI ATCGAT 2 cut(s) 120, 397
BtgI CCRYGG 2 cut(s) 655, 761
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 4 cut(s) 217, 268, 552, 677
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 5 cut(s) 44, 177, 306, 487, 865
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 2 cut(s) 175, 751
Cfr13I GGNCC 5 cut(s) 367, 463, 497, 626, 725
Cfr9I CCCGGG 1 cut(s) 134
ClaI ATCGAT 2 cut(s) 120, 397
CseI GACGC 1 cut(s) 781
Csp6I GTAC 4 cut(s) 421, 505, 571, 853
CviQI GTAC 4 cut(s) 421, 505, 571, 853
DdeI CTNAG 4 cut(s) 147, 315, 363, 873
DpnI GATC 6 cut(s) 119, 123, 192, 396, 665, 845
DpnII GATC 6 cut(s) 117, 121, 190, 394, 663, 843
DraI TTTAAA 1 cut(s) 601
EaeI YGGCCR 2 cut(s) 40, 425
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 3 cut(s) 309, 655, 761
Eco24I GRGCYC 2 cut(s) 186, 330
Eco47I GGWCC 4 cut(s) 367, 463, 497, 725
Eco53kI GAGCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 367, 463
EcoT14I CCWWGG 3 cut(s) 309, 655, 761
EcoT38I GRGCYC 2 cut(s) 186, 330
ErhI CCWWGG 3 cut(s) 309, 655, 761
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 173
FauI CCCGC 1 cut(s) 441
FbaI TGATCA 1 cut(s) 663
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 8 cut(s) 15, 18, 21, 24, 223, 437, 652, 801
FokI GGATG 4 cut(s) 224, 275, 559, 684
FriOI GRGCYC 2 cut(s) 186, 330
Fsp4HI GCNGC 8 cut(s) 15, 18, 21, 24, 223, 437, 652, 801
FspBI CTAG 1 cut(s) 907
GlaI GCGC 1 cut(s) 168
GluI GCNGC 8 cut(s) 15, 18, 21, 24, 223, 437, 652, 801
GsaI CCCAGC 2 cut(s) 54, 414
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 4 cut(s) 42, 427, 627, 863
HapII CCGG 3 cut(s) 135, 176, 752
HgaI GACGC 1 cut(s) 781
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 792
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 2 cut(s) 98, 707
HpaII CCGG 3 cut(s) 135, 176, 752
HphI GGTGA 4 cut(s) 226, 268, 285, 368
Hpy166II GTNNAC 3 cut(s) 234, 505, 828
Hpy188I TCNGA 4 cut(s) 195, 476, 729, 874
Hpy188III TCNNGA 2 cut(s) 284, 586
Hpy8I GTNNAC 3 cut(s) 234, 505, 828
HpyAV CCTTC 4 cut(s) 69, 316, 328, 583
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 3 cut(s) 14, 342, 698
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 23, 181, 325, 433
HpyF3I CTNAG 4 cut(s) 147, 315, 363, 873
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 792
HspAI GCGC 1 cut(s) 167
KroI GCCGGC 1 cut(s) 175
KroNI GCCGGC 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 6 cut(s) 117, 121, 190, 394, 663, 843
LmnI GCTCC 4 cut(s) 39, 181, 325, 414
Lsp1109I GCAGC 6 cut(s) 26, 29, 32, 35, 448, 812
LweI GCATC 6 cut(s) 35, 253, 349, 453, 537, 707
MaeI CTAG 1 cut(s) 907
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 4 cut(s) 274, 291, 679, 742
MalI GATC 6 cut(s) 119, 123, 192, 396, 665, 845
MboI GATC 6 cut(s) 117, 121, 190, 394, 663, 843
MboII GAAGA 2 cut(s) 578, 763
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 3 cut(s) 8, 186, 330
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 4 cut(s) 107, 492, 621, 848
MluNI TGGCCA 1 cut(s) 427
Mox20I TGGCCA 1 cut(s) 427
MroNI GCCGGC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 427
MseI TTAA 2 cut(s) 600, 690
MslI CAYNNNNRTG 2 cut(s) 261, 811
Msp20I TGGCCA 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 3 cut(s) 135, 176, 752
MspR9I CCNGG 2 cut(s) 135, 136
MunI CAATTG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 20, 23, 181, 325, 433
NaeI GCCGGC 1 cut(s) 177
NciI CCSGG 2 cut(s) 135, 136
NcoI CCATGG 2 cut(s) 655, 761
NdeII GATC 6 cut(s) 117, 121, 190, 394, 663, 843
NgoMIV GCCGGC 1 cut(s) 175
NlaIV GGNNCC 5 cut(s) 35, 327, 464, 584, 821
NmeAIII GCCGAG 3 cut(s) 10, 18, 80
NmuCI GTSAC 3 cut(s) 274, 291, 742
NspI RCATGY 4 cut(s) 260, 489, 814, 834
NspV TTCGAA 1 cut(s) 379
PaeI GCATGC 1 cut(s) 489
PciI ACATGT 2 cut(s) 810, 830
PdiI GCCGGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 98, 707
PkrI GCNGC 8 cut(s) 16, 19, 22, 25, 224, 438, 653, 802
PpuMI RGGWCCY 2 cut(s) 367, 463
PscI ACATGT 2 cut(s) 810, 830
Psp124BI GAGCTC 1 cut(s) 186
Psp5II RGGWCCY 2 cut(s) 367, 463
PspFI CCCAGC 2 cut(s) 50, 410
PspN4I GGNNCC 5 cut(s) 35, 327, 464, 584, 821
PspPI GGNCC 5 cut(s) 367, 463, 497, 626, 725
PspPPI RGGWCCY 2 cut(s) 367, 463
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 4 cut(s) 422, 506, 572, 854
RsaNI GTAC 4 cut(s) 421, 505, 571, 853
RseI CAYNNNNRTG 2 cut(s) 261, 811
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 600, 690
SatI GCNGC 8 cut(s) 15, 18, 21, 24, 223, 437, 652, 801
Sau3AI GATC 6 cut(s) 117, 121, 190, 394, 663, 843
Sau96I GGNCC 5 cut(s) 367, 463, 497, 626, 725
ScaI AGTACT 1 cut(s) 422
ScrFI CCNGG 2 cut(s) 135, 136
SduI GDGCHC 3 cut(s) 8, 186, 330
SfaNI GCATC 6 cut(s) 35, 253, 349, 453, 537, 707
SfuI TTCGAA 1 cut(s) 379
SinI GGWCC 4 cut(s) 367, 463, 497, 725
SmaI CCCGGG 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 261, 811
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SphI GCATGC 1 cut(s) 489
Sse9I AATT 4 cut(s) 107, 492, 621, 848
SsiI CCGC 5 cut(s) 179, 222, 434, 652, 778
SspMI CTAG 1 cut(s) 907
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 2 cut(s) 133, 134
StyI CCWWGG 3 cut(s) 309, 655, 761
TaiI ACGT 1 cut(s) 744
TaqI TCGA 3 cut(s) 120, 379, 397
TasI AATT 4 cut(s) 107, 492, 621, 848
TatI WGTACW 2 cut(s) 420, 570
TauI GCSGC 2 cut(s) 225, 654
TfiI GAWTC 2 cut(s) 98, 707
Tru1I TTAA 2 cut(s) 600, 690
Tru9I TTAA 2 cut(s) 600, 690
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 3 cut(s) 274, 291, 742
TseI GCWGC 6 cut(s) 14, 17, 20, 23, 436, 800
Tsp45I GTSAC 3 cut(s) 274, 291, 742
TspDTI ATGAA 1 cut(s) 772
TspMI CCCGGG 1 cut(s) 134
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 4 cut(s) 367, 463, 497, 725
XceI RCATGY 4 cut(s) 260, 489, 814, 834
XmaI CCCGGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 827
XspI CTAG 1 cut(s) 907
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.