Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016023.1

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Reverse (-)

8408 .. 10311

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016023.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgctttatggggctcaaaatatgaaactcacttcaggcatagcaccaactgggttaggttccgggggaaattttcaatatgggtctttccccaaaaaggtttcagttagttatggaaggaattccaaggctagaactttgggacccatttgcagtgtctcatcctcaaggcctgcttctcaacctaggttcatacagcacaagcaagaagcattttggttctacaggtttttatctatagtctatgatcatgtgataaaccctgggcattggactgaggatatgagagacgatgctctcaagccggctgatctttatgacaggaatatgacagtggtagatgttggaggtggaactgggttcacaacactggggattgtgaagcatgtggatgccaaaaatgttacaattcttgaccaatcaccgcaccagcttgccaaggctaaggagaaggagcccttgaaagagtgcaagattattgaaggtgatgccgaggatctgccattcccaactgattatgccgatagatatgtctctgctggaagtatagagtactggccggatccacagcgtggaatcaaggaagcatacagggtactaaaaataggaggaaaagcctgtcttataggccctgtgtacccaaccttctggctgtctcgttttttcgcagacgtgtggatgctcttcccaacagaggaagaatacattgagtggttccaaaaggcaggtttcaaagatgttaaactaaaaagaattggtccaaagtggtaccgtggagttcgccggcatggcctgattatgggttgctctgtgacaggtgtgaagcccttaagtggggattcccctctcgagcggcgaccatattggtgcaatggtaatacaggaagtggcgaccatatttggtggaatgccgaccatggtggtgctcatgctagtgattgtggacttgcagtagtggcaaagaggagttgtgatggtgttggtgagactgtgacagtgattgatgtggttcattttaaatacaaaaacggaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

CTP_transf_like Methyltransf_11 Methyltransf_25

Protein Analysis

345

Amino Acids

38.46

Weight (kDa)

8.89

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	768
AccB7I	CCANNNNNTGG	1 cut(s)	572
AccBSI	CCGCTC	1 cut(s)	853
AciI	CCGC	2 cut(s)	425, 853
AclWI	GGATC	3 cut(s)	504, 557, 570
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	70, 121
AcuI	CTGAAG	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	4 cut(s)	554, 597, 638, 770
AfiI	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
AflII	CTTAAG	1 cut(s)	829
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	4 cut(s)	77, 463, 482, 733
AjiI	CACGTC	1 cut(s)	673
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	5 cut(s)	163, 282, 538, 660, 980
AlwI	GGATC	3 cut(s)	504, 557, 570
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	4 cut(s)	170, 557, 628, 790
ApoI	RAATTY	2 cut(s)	70, 121
Asp700I	GAANNNNTTC	1 cut(s)	121
Asp718I	GGTACC	1 cut(s)	768
AspA2I	CCTAGG	1 cut(s)	185
AspS9I	GGNCC	3 cut(s)	143, 629, 758
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	414, 497, 995
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	2 cut(s)	143, 758
AvrII	CCTAGG	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	768
BanII	GRGCYC	2 cut(s)	16, 459
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
Bbv12I	GWGCWC	1 cut(s)	928
BccI	CCATC	1 cut(s)	968
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	5 cut(s)	163, 282, 538, 660, 980
BfaI	CTAG	3 cut(s)	132, 186, 933
BfmI	CTRYAG	2 cut(s)	223, 237
BfrI	CTTAAG	1 cut(s)	829
BfuAI	ACCTGC	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	789
BisI	GCNGC	1 cut(s)	854
BlnI	CCTAGG	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	855
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	64, 264
Bme18I	GGWCC	2 cut(s)	143, 758
BmeT110I	CYCGRG	1 cut(s)	848
BmgBI	CACGTC	1 cut(s)	673
BmgT120I	GGNCC	3 cut(s)	143, 629, 758
BmiI	GGNNCC	7 cut(s)	61, 144, 145, 456, 564, 716, 770
BmrFI	CCNGG	2 cut(s)	64, 264
BmrI	ACTGGG	3 cut(s)	60, 366, 380
BmsI	GCATC	4 cut(s)	283, 382, 478, 669
BmuI	ACTGGG	3 cut(s)	60, 366, 380
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	2 cut(s)	151, 284
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	9 cut(s)	63, 126, 185, 262, 263, 438, 492, 772, 916
Bsc4I	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
Bse118I	RCCGGY	2 cut(s)	304, 783
Bse1I	ACTGG	4 cut(s)	55, 361, 375, 560
Bse3DI	GCAATG	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	9 cut(s)	63, 126, 185, 262, 263, 438, 492, 772, 916
BseGI	GGATG	3 cut(s)	161, 397, 684
BseLI	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	4 cut(s)	55, 361, 375, 560
BseRI	GAGGAG	1 cut(s)	979
BshFI	GGCC	4 cut(s)	172, 559, 630, 792
BshNI	GGYRCC	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	928
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	4 cut(s)	63, 305, 560, 784
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	6 cut(s)	97, 572, 694, 799, 833, 834
BsmAI	GTCTC	5 cut(s)	163, 282, 538, 660, 980
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	4 cut(s)	172, 559, 630, 792
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	3 cut(s)	16, 459, 928
Bsp143I	GATC	4 cut(s)	247, 310, 496, 562
Bsp19I	CCATGG	1 cut(s)	916
BspACI	CCGC	2 cut(s)	425, 853
BspANI	GGCC	4 cut(s)	172, 559, 630, 792
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	7 cut(s)	61, 144, 145, 456, 564, 716, 770
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	3 cut(s)	504, 557, 570
BspQI	GCTCTTC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	768
BspTI	CTTAAG	1 cut(s)	829
BsrBI	CCGCTC	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	877
BsrFI	RCCGGY	2 cut(s)	304, 783
BsrI	ACTGG	4 cut(s)	55, 361, 375, 560
BssAI	RCCGGY	2 cut(s)	304, 783
BssECI	CCNNGG	9 cut(s)	63, 126, 185, 262, 263, 438, 492, 772, 916
BssMI	GATC	4 cut(s)	247, 310, 496, 562
BssT1I	CCWWGG	4 cut(s)	126, 185, 438, 916
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	4 cut(s)	334, 773, 991, 997
Bst6I	CTCTTC	1 cut(s)	689
BstAFI	CTTAAG	1 cut(s)	829
BstC8I	GCNNGC	4 cut(s)	174, 306, 435, 785
BstDEI	CTNAG	2 cut(s)	276, 444
BstDSI	CCRYGG	2 cut(s)	772, 916
BstF5I	GGATG	3 cut(s)	161, 397, 684
BstKTI	GATC	4 cut(s)	250, 313, 499, 565
BstMAI	GTCTC	5 cut(s)	163, 282, 538, 660, 980
BstMBI	GATC	4 cut(s)	247, 310, 496, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	789, 956
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	62, 262
BstSFI	CTRYAG	2 cut(s)	223, 237
BstX2I	RGATCY	2 cut(s)	496, 562
BstXI	CCANNNNNNTGG	1 cut(s)	648
BstYI	RGATCY	2 cut(s)	496, 562
BsuRI	GGCC	4 cut(s)	172, 559, 630, 792
BtgI	CCRYGG	2 cut(s)	772, 916
BtrI	CACGTC	1 cut(s)	673
BtsCI	GGATG	3 cut(s)	161, 397, 684
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	4 cut(s)	160, 339, 368, 1002
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	4 cut(s)	174, 306, 435, 785
Cfr10I	RCCGGY	2 cut(s)	304, 783
Cfr13I	GGNCC	3 cut(s)	143, 629, 758
Csp6I	GTAC	4 cut(s)	553, 596, 637, 769
CviAII	CATG	5 cut(s)	251, 386, 788, 917, 929
CviQI	GTAC	4 cut(s)	553, 596, 637, 769
DdeI	CTNAG	2 cut(s)	276, 444
DpnI	GATC	4 cut(s)	249, 312, 498, 564
DpnII	GATC	4 cut(s)	247, 310, 496, 562
DraI	TTTAAA	1 cut(s)	1018
DraIII	CACNNNGTG	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	4 cut(s)	126, 185, 438, 916
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	16, 459
Eco47I	GGWCC	2 cut(s)	143, 758
Eco57I	CTGAAG	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	848
EcoO109I	RGGNCCY	2 cut(s)	143, 629
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	4 cut(s)	126, 185, 438, 916
EcoT38I	GRGCYC	2 cut(s)	16, 459
ErhI	CCWWGG	4 cut(s)	126, 185, 438, 916
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	5 cut(s)	254, 389, 791, 920, 932
FalI	AAGNNNNNCTT	6 cut(s)	160, 192, 443, 475, 606, 638
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	5 cut(s)	250, 385, 787, 916, 928
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	854
FokI	GGATG	3 cut(s)	148, 404, 691
FriOI	GRGCYC	2 cut(s)	16, 459
Fsp4HI	GCNGC	1 cut(s)	854
FspBI	CTAG	3 cut(s)	132, 186, 933
GluI	GCNGC	1 cut(s)	854
HaeIII	GGCC	4 cut(s)	172, 559, 630, 792
HapII	CCGG	4 cut(s)	63, 305, 560, 784
Hin1II	CATG	5 cut(s)	254, 389, 791, 920, 932
HinfI	GANTC	2 cut(s)	576, 839
HpaII	CCGG	4 cut(s)	63, 305, 560, 784
HphI	GGTGA	3 cut(s)	414, 497, 995
Hpy166II	GTNNAC	3 cut(s)	363, 637, 944
Hpy188III	TCNNGA	2 cut(s)	413, 848
Hpy8I	GTNNAC	3 cut(s)	363, 637, 944
HpyAV	CCTTC	4 cut(s)	111, 445, 476, 655
HpyCH4III	ACNGT	4 cut(s)	334, 773, 991, 997
HpyCH4IV	ACGT	1 cut(s)	672
HpyCH4V	TGCA	4 cut(s)	153, 471, 870, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	789, 956
HpyF3I	CTNAG	2 cut(s)	276, 444
HpySE526I	ACGT	1 cut(s)	672
Hsp92II	CATG	5 cut(s)	254, 389, 791, 920, 932
KflI	GGGWCCC	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	772
KroI	GCCGGC	2 cut(s)	304, 783
KroNI	GCCGGC	2 cut(s)	306, 785
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	247, 310, 496, 562
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	1 cut(s)	454
LweI	GCATC	4 cut(s)	283, 382, 478, 669
MaeI	CTAG	3 cut(s)	132, 186, 933
MaeII	ACGT	1 cut(s)	672
MaeIII	GTNAC	3 cut(s)	403, 811, 991
MalI	GATC	4 cut(s)	249, 312, 498, 564
MbiI	CCGCTC	1 cut(s)	853
MboI	GATC	4 cut(s)	247, 310, 496, 562
MboII	GAAGA	2 cut(s)	676, 710
MflI	RGATCY	2 cut(s)	496, 562
MhlI	GDGCHC	3 cut(s)	16, 459, 928
MluCI	AATT	4 cut(s)	70, 121, 408, 753
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	8 cut(s)	175, 271, 341, 487, 602, 688, 855, 957
MroNI	GCCGGC	2 cut(s)	304, 783
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	741, 830, 1017
MslI	CAYNNNNRTG	4 cut(s)	390, 865, 921, 933
MspCI	CTTAAG	1 cut(s)	829
MspI	CCGG	4 cut(s)	63, 305, 560, 784
MspR9I	CCNGG	2 cut(s)	64, 264
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	789, 956
NaeI	GCCGGC	2 cut(s)	306, 785
NciI	CCSGG	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	916
NdeII	GATC	4 cut(s)	247, 310, 496, 562
NgoMIV	GCCGGC	2 cut(s)	304, 783
NlaIII	CATG	5 cut(s)	254, 389, 791, 920, 932
NlaIV	GGNNCC	7 cut(s)	61, 144, 145, 456, 564, 716, 770
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	811, 991
NspI	RCATGY	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	848
PasI	CCCWGGG	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	913
PdiI	GCCGGC	2 cut(s)	306, 785
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	576, 839
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	855
PpuMI	RGGWCCY	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	7 cut(s)	61, 144, 145, 456, 564, 716, 770
PspPI	GGNCC	3 cut(s)	143, 629, 758
PspPPI	RGGWCCY	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	496, 562
RsaI	GTAC	4 cut(s)	554, 597, 638, 770
RsaNI	GTAC	4 cut(s)	553, 596, 637, 769
RseI	CAYNNNNRTG	4 cut(s)	390, 865, 921, 933
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	741, 830, 1017
SatI	GCNGC	1 cut(s)	854
Sau3AI	GATC	4 cut(s)	247, 310, 496, 562
Sau96I	GGNCC	3 cut(s)	143, 629, 758
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	64, 264
SduI	GDGCHC	3 cut(s)	16, 459, 928
SfaNI	GCATC	4 cut(s)	283, 382, 478, 669
SfcI	CTRYAG	2 cut(s)	223, 237
Sfr274I	CTCGAG	1 cut(s)	848
SinI	GGWCC	2 cut(s)	143, 758
SlaI	CTCGAG	1 cut(s)	848
SmiMI	CAYNNNNRTG	4 cut(s)	390, 865, 921, 933
SmlI	CTYRAG	4 cut(s)	166, 299, 829, 848
SmoI	CTYRAG	4 cut(s)	166, 299, 829, 848
Sse9I	AATT	4 cut(s)	70, 121, 408, 753
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	425, 853
SspMI	CTAG	3 cut(s)	132, 186, 933
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	2 cut(s)	62, 262
StyI	CCWWGG	4 cut(s)	126, 185, 438, 916
TaaI	ACNGT	4 cut(s)	334, 773, 991, 997
TaiI	ACGT	1 cut(s)	675
TaqI	TCGA	1 cut(s)	849
TasI	AATT	4 cut(s)	70, 121, 408, 753
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	856
TfiI	GAWTC	2 cut(s)	576, 839
Tru1I	TTAA	3 cut(s)	741, 830, 1017
Tru9I	TTAA	3 cut(s)	741, 830, 1017
TscAI	CASTG	4 cut(s)	160, 339, 375, 1002
TseFI	GTSAC	2 cut(s)	811, 991
Tsp45I	GTSAC	2 cut(s)	811, 991
TspDTI	ATGAA	3 cut(s)	38, 181, 1001
TspRI	CASTG	4 cut(s)	160, 339, 375, 1002
Van91I	CCANNNNNTGG	1 cut(s)	572
Vha464I	CTTAAG	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	143, 758
XapI	RAATTY	2 cut(s)	70, 121
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	848
XmaJI	CCTAGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	3 cut(s)	132, 186, 933
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.