Rh6BG325600
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
55743576 .. 55746307
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG325600.1

Sequence Viewer

Length: 1032 bp
ATGGCCTCTGCGATGCTCAACGGGGCCGAGCATCTCACACTCCGGCGAGGTTTATCCCCAAATGGGTTGGGTTTTGTTGGGTCGGATTTTCATGGGAAGCAGTTTCTGAAGATGGGTTTGGTCTCAAACACTAGAATTTCCAAGTCTGGTGCTAGAGCCATTGTGCCCAAGTGTAGTGTCTCACCTTCCAGGCCTGCTTCTCAGCCCAGGTTCATTCAGCACAAGAAAGAGGCTTTCTGGTTTTATAGGTTTCTGTCAATTGTTTATGACCATGTCATAAACCCTGGGCATTGGACTGAGGACATGAGAGACGAGGCACTTGAGCCAGCTGATCTCAGCGACAGGAGAATGATTGTCGTAGATGTGGGTGGAGGTACTGGGTTCACTACCTTGGGGATAGTTAAGCATGTGGATGCCAAGAATGTGACCATTCTTGATCAGTCCCCTCATCAGCTAGCTAGGGCTAAGAAGAAGGAGCCTTTGAAGGAGTGCAAGATCATTGAGGGCGATGCTGAGGACTTGCCTTTTCGGACTGATTATGCGGATCGATATGTATCTGCAGGAAGTATTGAGTACTGGCCAGACCCACAGCGTGGCATCAAGGAAGCATACAGGGTCTTGAAACTTGGAGGAAAAGCATGTGTGATTGGTCCTGTGTACCCAACGTTTTGGTTGTCTCGCTTCTTTGCTGATGTATGGATGCTTTTCCCCAAGGAGGAAGAGTACATTGAATGGTTCGAGAAGGCTGGATTCAAAGATGTCCAACTGAAAAGAATTGGCCCAAAATGGTACCGTGGGGTTCGCCGCCATGGATTGATAATGGGGTGTTCTGTAACAGGCGTTAAGCCTGCGTCTGGGGATTCTCCTTTACAGGTAGTTTGTTTTCGAGAGCTCTATTTTGACTTATTTCTTGATAATTATAATTGCTCTTCTGAGTTGGATTCCTTATCAGTTTATAGCCTTGAGATTTTATGTTTATGGATGCATATAATATCAACTTTGATGCAATCAGAAGCGCATCTAAATTTGTAG

Protein Analysis

343

Amino Acids

38.86

Weight (kDa)

8.36

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 114 - 219 3.4e-11 Methyltransferase domain
Ubie_methyltran PF01209 117 - 221 3.3e-12 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 119 - 211 9.4e-17 Methyltransferase domain
Methyltransf_11 PF08241 120 - 214 2.5e-19 Methyltransferase domain
Methyltransf_12 PF08242 120 - 212 7.6e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
Acc65I GGTACC 1 cut(s) 789
AccB1I GGYRCC 1 cut(s) 789
AccB7I CCANNNNNTGG 1 cut(s) 593
AciI CCGC 2 cut(s) 542, 805
AclI AACGTT 1 cut(s) 665
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 2 cut(s) 135, 1024
AcuI CTGAAG 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 5 cut(s) 376, 575, 659, 725, 791
AfiI CCNNNNNNNGG 4 cut(s) 63, 593, 715, 854
AgsI TTSAA 4 cut(s) 484, 622, 731, 754
AjnI CCWGG 3 cut(s) 188, 206, 283
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 4 cut(s) 329, 454, 458, 892
AluI AGCT 4 cut(s) 329, 454, 458, 892
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 4 cut(s) 127, 184, 303, 681
AlwI GGATC 1 cut(s) 552
AlwNI CAGNNNCTG 1 cut(s) 106
AoxI GGCC 5 cut(s) 3, 24, 191, 578, 778
ApoI RAATTY 2 cut(s) 135, 1024
Asp718I GGTACC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 1018
AspS9I GGNCC 3 cut(s) 24, 650, 779
AsuHPI GGTGA 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 650
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 580
BanI GGYRCC 1 cut(s) 789
BanII GRGCYC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 894
BbvCI CCTCAGC 1 cut(s) 513
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 3 cut(s) 190, 208, 285
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 4 cut(s) 127, 184, 303, 681
BfaI CTAG 4 cut(s) 132, 153, 455, 459
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 1 cut(s) 805
BlsI GCNGC 1 cut(s) 806
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 3 cut(s) 190, 208, 285
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 3 cut(s) 24, 650, 779
BmiI GGNNCC 3 cut(s) 25, 477, 791
BmrFI CCNGG 3 cut(s) 190, 208, 285
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 9 cut(s) 3, 40, 403, 499, 606, 690, 972, 993, 1027
BmtI GCTAGC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 2 cut(s) 341, 983
Bsa29I ATCGAT 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 7 cut(s) 206, 283, 284, 390, 711, 793, 808
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 593, 715, 854
Bse1I ACTGG 2 cut(s) 382, 581
Bse8I GATNNNNATC 1 cut(s) 553
BseBI CCWGG 3 cut(s) 190, 208, 285
BseCI ATCGAT 1 cut(s) 547
BseDI CCNNGG 7 cut(s) 206, 283, 284, 390, 711, 793, 808
BseGI GGATG 3 cut(s) 418, 705, 987
BseJI GATNNNNATC 1 cut(s) 553
BseLI CCNNNNNNNGG 4 cut(s) 63, 593, 715, 854
BseMII CTCAG 5 cut(s) 215, 288, 349, 504, 924
BseNI ACTGG 2 cut(s) 382, 581
BseSI GKGCMC 1 cut(s) 168
BshFI GGCC 5 cut(s) 5, 26, 193, 580, 780
BshNI GGYRCC 1 cut(s) 789
BshVI ATCGAT 1 cut(s) 547
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 4 cut(s) 63, 593, 715, 854
BsmAI GTCTC 4 cut(s) 127, 184, 303, 681
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 5 cut(s) 5, 26, 193, 580, 780
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 168, 894
Bsp143I GATC 4 cut(s) 331, 436, 495, 544
Bsp19I CCATGG 1 cut(s) 808
BspACI CCGC 2 cut(s) 542, 805
BspANI GGCC 5 cut(s) 5, 26, 193, 580, 780
BspCNI CTCAG 5 cut(s) 214, 289, 348, 505, 925
BspDI ATCGAT 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 25, 477, 791
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 552
BspQI GCTCTTC 1 cut(s) 934
BspT107I GGYRCC 1 cut(s) 789
BspTNI GGTCTC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 382, 581
BssECI CCNNGG 7 cut(s) 206, 283, 284, 390, 711, 793, 808
BssMI GATC 4 cut(s) 331, 436, 495, 544
BssT1I CCWWGG 3 cut(s) 390, 711, 808
Bst2UI CCWGG 3 cut(s) 190, 208, 285
Bst4CI ACNGT 1 cut(s) 794
Bst6I CTCTTC 2 cut(s) 714, 934
BstC8I GCNNGC 4 cut(s) 195, 327, 456, 849
BstDEI CTNAG 6 cut(s) 201, 297, 335, 465, 513, 933
BstDSI CCRYGG 2 cut(s) 793, 808
BstF5I GGATG 3 cut(s) 418, 705, 987
BstHHI GCGC 1 cut(s) 1018
BstKTI GATC 4 cut(s) 334, 439, 498, 547
BstMAI GTCTC 4 cut(s) 127, 184, 303, 681
BstMBI GATC 4 cut(s) 331, 436, 495, 544
BstNI CCWGG 3 cut(s) 190, 208, 285
BstNSI RCATGY 2 cut(s) 410, 642
BstSCI CCNGG 3 cut(s) 188, 206, 283
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 168
BstXI CCANNNNNNTGG 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 547
BsuRI GGCC 5 cut(s) 5, 26, 193, 580, 780
BsuTUI ATCGAT 1 cut(s) 547
BtgI CCRYGG 2 cut(s) 793, 808
BtgZI GCGATG 2 cut(s) 26, 522
BtsCI GGATG 3 cut(s) 418, 705, 987
Cac8I GCNNGC 4 cut(s) 195, 327, 456, 849
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 1 cut(s) 1018
Cfr13I GGNCC 3 cut(s) 24, 650, 779
ClaI ATCGAT 1 cut(s) 547
CseI GACGC 1 cut(s) 840
Csp6I GTAC 5 cut(s) 375, 574, 658, 724, 790
CviAII CATG 6 cut(s) 92, 272, 304, 407, 639, 809
CviQI GTAC 5 cut(s) 375, 574, 658, 724, 790
DdeI CTNAG 6 cut(s) 201, 297, 335, 465, 513, 933
DpnI GATC 4 cut(s) 333, 438, 497, 546
DpnII GATC 4 cut(s) 331, 436, 495, 544
DraIII CACNNNGTG 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 2 cut(s) 714, 934
EarI CTCTTC 2 cut(s) 714, 934
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 3 cut(s) 390, 711, 808
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 650
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 892
EcoRII CCWGG 3 cut(s) 188, 206, 283
EcoT14I CCWWGG 3 cut(s) 390, 711, 808
EcoT22I ATGCAT 1 cut(s) 987
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 3 cut(s) 390, 711, 808
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 6 cut(s) 95, 275, 307, 410, 642, 812
FaqI GGGAC 1 cut(s) 427
FatI CATG 6 cut(s) 91, 271, 303, 406, 638, 808
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 3 cut(s) 425, 712, 994
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 4 cut(s) 132, 153, 455, 459
GlaI GCGC 1 cut(s) 1017
GluI GCNGC 1 cut(s) 805
HaeIII GGCC 5 cut(s) 5, 26, 193, 580, 780
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 840
HhaI GCGC 1 cut(s) 1018
Hin1II CATG 6 cut(s) 95, 275, 307, 410, 642, 812
Hin6I GCGC 1 cut(s) 1016
HinP1I GCGC 1 cut(s) 1016
HinfI GANTC 3 cut(s) 750, 860, 941
HpaII CCGG 1 cut(s) 43
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 2 cut(s) 384, 658
Hpy188I TCNGA 5 cut(s) 85, 108, 531, 934, 1012
Hpy188III TCNNGA 5 cut(s) 434, 619, 739, 887, 911
Hpy8I GTNNAC 2 cut(s) 384, 658
HpyAV CCTTC 4 cut(s) 195, 466, 478, 736
HpyCH4III ACNGT 1 cut(s) 794
HpyCH4IV ACGT 1 cut(s) 665
HpyCH4V TGCA 4 cut(s) 492, 560, 985, 1006
HpyF3I CTNAG 6 cut(s) 201, 297, 335, 465, 513, 933
HpySE526I ACGT 1 cut(s) 665
Hsp92II CATG 6 cut(s) 95, 275, 307, 410, 642, 812
HspAI GCGC 1 cut(s) 1016
KpnI GGTACC 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 331, 436, 495, 544
LguI GCTCTTC 1 cut(s) 934
LmnI GCTCC 1 cut(s) 475
LweI GCATC 9 cut(s) 3, 40, 403, 499, 606, 690, 972, 993, 1027
MaeI CTAG 4 cut(s) 132, 153, 455, 459
MaeII ACGT 1 cut(s) 665
MaeIII GTNAC 2 cut(s) 424, 832
MalI GATC 4 cut(s) 333, 438, 497, 546
MboI GATC 4 cut(s) 331, 436, 495, 544
MboII GAAGA 4 cut(s) 121, 481, 731, 921
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 168, 894
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 6 cut(s) 135, 258, 774, 916, 922, 1024
MluNI TGGCCA 1 cut(s) 580
MmeI TCCRAC 3 cut(s) 63, 787, 918
Mox20I TGGCCA 1 cut(s) 580
Mph1103I ATGCAT 1 cut(s) 987
MscI TGGCCA 1 cut(s) 580
MseI TTAA 2 cut(s) 402, 843
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 3 cut(s) 190, 208, 285
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 3 cut(s) 190, 208, 285
NcoI CCATGG 1 cut(s) 808
NdeII GATC 4 cut(s) 331, 436, 495, 544
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 6 cut(s) 95, 275, 307, 410, 642, 812
NlaIV GGNNCC 3 cut(s) 25, 477, 791
NmeAIII GCCGAG 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 987
NspI RCATGY 2 cut(s) 410, 642
PasI CCCWGGG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 934
PfeI GAWTC 3 cut(s) 750, 860, 941
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 1 cut(s) 806
PsiI TTATAA 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 894
Psp1406I AACGTT 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 188, 206, 283
PspGI CCWGG 3 cut(s) 188, 206, 283
PspN4I GGNNCC 3 cut(s) 25, 477, 791
PspPI GGNCC 3 cut(s) 24, 650, 779
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 5 cut(s) 376, 575, 659, 725, 791
RsaNI GTAC 5 cut(s) 375, 574, 658, 724, 790
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 934
SaqAI TTAA 2 cut(s) 402, 843
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 4 cut(s) 331, 436, 495, 544
Sau96I GGNCC 3 cut(s) 24, 650, 779
ScaI AGTACT 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 190, 208, 285
SduI GDGCHC 2 cut(s) 168, 894
SfaNI GCATC 9 cut(s) 3, 40, 403, 499, 606, 690, 972, 993, 1027
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 320, 962
SmoI CTYRAG 2 cut(s) 320, 962
Sse9I AATT 6 cut(s) 135, 258, 774, 916, 922, 1024
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 2 cut(s) 542, 805
SspMI CTAG 4 cut(s) 132, 153, 455, 459
SstI GAGCTC 1 cut(s) 894
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 188, 206, 283
StyI CCWWGG 3 cut(s) 390, 711, 808
TaaI ACNGT 1 cut(s) 794
TaiI ACGT 1 cut(s) 668
TaqI TCGA 3 cut(s) 547, 738, 886
TasI AATT 6 cut(s) 135, 258, 774, 916, 922, 1024
TatI WGTACW 2 cut(s) 573, 723
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 3 cut(s) 750, 860, 941
Tru1I TTAA 2 cut(s) 402, 843
Tru9I TTAA 2 cut(s) 402, 843
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 80, 202
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 2 cut(s) 135, 1024
XceI RCATGY 2 cut(s) 410, 642
XspI CTAG 4 cut(s) 132, 153, 455, 459
ZrmI AGTACT 1 cut(s) 575
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.