Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8119594.1

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Reverse (-)

76 .. 603

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8119594.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgaaactcacttctggcatagcaccaactgggttaggttccgggggaaattttcaatatgggtctttccccaaaaaggtttcagttagttatggaaggaattccaaggctagaactttgggacccatttgcagtgtctcatcctcaaggcctgcttctcaacctaggttcatacagcacaagcaagaagcattttggttctacaggtttttatctatagtctatgatcatgtgataaaccctgggcattggactgaggatatgagagacgatgctctggagccggctgatctttatgacaggaatatgacagtggtagatgttggaggtggaactgggttcacaacactggggattgtgaagcatgtggatgccaaaaatgttacaattcttgaccaatcaccgcaccagcttgccaaggctaaggagaaggagcccttgaaagagtgcaagattattgaaggtgatgccgaggatctgccattcccaactgattatgccgatagatatgtctctgctggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

CTP_transf_like Methyltransf_11 Methyltransf_25

Protein Analysis

175

Amino Acids

19.32

Weight (kDa)

6.96

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	49, 100
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	56, 442, 461
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
Alw26I	GTCTC	3 cut(s)	142, 261, 517
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	1 cut(s)	149
ApoI	RAATTY	2 cut(s)	49, 100
Asp700I	GAANNNNTTC	1 cut(s)	100
AspA2I	CCTAGG	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	393, 476
AvaII	GGWCC	1 cut(s)	122
AvrII	CCTAGG	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	243
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	3 cut(s)	142, 261, 517
BfaI	CTAG	2 cut(s)	111, 165
BfmI	CTRYAG	2 cut(s)	202, 216
BlnI	CCTAGG	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	43, 243
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	5 cut(s)	40, 123, 124, 282, 435
BmrFI	CCNGG	2 cut(s)	43, 243
BmrI	ACTGGG	3 cut(s)	39, 345, 359
BmsI	GCATC	3 cut(s)	262, 361, 457
BmuI	ACTGGG	3 cut(s)	39, 345, 359
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	7 cut(s)	42, 105, 164, 241, 242, 417, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	3 cut(s)	34, 340, 354
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	7 cut(s)	42, 105, 164, 241, 242, 417, 471
BseGI	GGATG	2 cut(s)	140, 376
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	34, 340, 354
BshFI	GGCC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	42, 284
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	3 cut(s)	142, 261, 517
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	226, 289, 475
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	5 cut(s)	40, 123, 124, 282, 435
BspPI	GGATC	1 cut(s)	483
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	3 cut(s)	34, 340, 354
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	7 cut(s)	42, 105, 164, 241, 242, 417, 471
BssMI	GATC	3 cut(s)	226, 289, 475
BssT1I	CCWWGG	3 cut(s)	105, 164, 417
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	153, 285, 414
BstDEI	CTNAG	2 cut(s)	255, 423
BstF5I	GGATG	2 cut(s)	140, 376
BstKTI	GATC	3 cut(s)	229, 292, 478
BstMAI	GTCTC	3 cut(s)	142, 261, 517
BstMBI	GATC	3 cut(s)	226, 289, 475
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	41, 241
BstSFI	CTRYAG	2 cut(s)	202, 216
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	140, 376
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	139, 318, 347
Cac8I	GCNNGC	3 cut(s)	153, 285, 414
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	122
CviAII	CATG	2 cut(s)	230, 365
CviJI	RGCY	7 cut(s)	110, 151, 283, 287, 412, 422, 436
CviKI_1	RGCY	7 cut(s)	110, 151, 283, 287, 412, 422, 436
DdeI	CTNAG	2 cut(s)	255, 423
DpnI	GATC	3 cut(s)	228, 291, 477
DpnII	GATC	3 cut(s)	226, 289, 475
Eco130I	CCWWGG	3 cut(s)	105, 164, 417
Eco147I	AGGCCT	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	3 cut(s)	105, 164, 417
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	3 cut(s)	105, 164, 417
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	2 cut(s)	233, 368
FalI	AAGNNNNNCTT	4 cut(s)	139, 171, 422, 454
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	229, 364
FbaI	TGATCA	1 cut(s)	226
FokI	GGATG	2 cut(s)	127, 383
FriOI	GRGCYC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	111, 165
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	42, 284
Hin1II	CATG	2 cut(s)	233, 368
HpaII	CCGG	2 cut(s)	42, 284
HphI	GGTGA	2 cut(s)	393, 476
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	278, 392
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	4 cut(s)	90, 424, 455, 516
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	132, 450
HpyF3I	CTNAG	2 cut(s)	255, 423
Hsp92II	CATG	2 cut(s)	233, 368
KflI	GGGWCCC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	226, 289, 475
LmnI	GCTCC	2 cut(s)	280, 433
LweI	GCATC	3 cut(s)	262, 361, 457
MaeI	CTAG	2 cut(s)	111, 165
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	228, 291, 477
MboI	GATC	3 cut(s)	226, 289, 475
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	3 cut(s)	49, 100, 387
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	154, 250, 320, 466
MroNI	GCCGGC	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	100
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	2 cut(s)	42, 284
MspR9I	CCNGG	2 cut(s)	43, 243
MvaI	CCWGG	1 cut(s)	243
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	3 cut(s)	226, 289, 475
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	233, 368
NlaIV	GGNNCC	5 cut(s)	40, 123, 124, 282, 435
NmeAIII	GCCGAG	1 cut(s)	496
NspI	RCATGY	1 cut(s)	368
PasI	CCCWGGG	1 cut(s)	242
PceI	AGGCCT	1 cut(s)	151
PdiI	GCCGGC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	5 cut(s)	40, 123, 124, 282, 435
PspPI	GGNCC	1 cut(s)	122
PspPPI	RGGWCCY	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	226, 289, 475
Sau96I	GGNCC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	43, 243
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	9 cut(s)	40, 81, 166, 170, 209, 331, 414, 466, 527
SfaNI	GCATC	3 cut(s)	262, 361, 457
SfcI	CTRYAG	2 cut(s)	202, 216
SinI	GGWCC	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	3 cut(s)	49, 100, 387
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	111, 165
StuI	AGGCCT	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	41, 241
StyI	CCWWGG	3 cut(s)	105, 164, 417
TaaI	ACNGT	1 cut(s)	313
TasI	AATT	3 cut(s)	49, 100, 387
TscAI	CASTG	3 cut(s)	139, 318, 354
TspDTI	ATGAA	2 cut(s)	17, 160
TspRI	CASTG	3 cut(s)	139, 318, 354
VpaK11BI	GGWCC	1 cut(s)	122
XapI	RAATTY	2 cut(s)	49, 100
XceI	RCATGY	1 cut(s)	368
XmaJI	CCTAGG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	2 cut(s)	111, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.