Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Reverse (-)

32931685 .. 32932668

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0206500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCAGGAATATGACGAGATTGCTCCACCCCAATCAGTCTCGTTGAATGCTTTGTTCTTTTGGGTTCGGATTACTGATGTGCCTCTTCTCTTTGAAGATAAGGATACCATCAGGGCCATTGCTGGAAAGGTCATCGAATTGGATGACAAGCTTTTTGATAACACAGGAAAGATCCGGGTTAGGGTTTCTCATGATCTCTCGAAACCCTTCTTTCTGAAGAAAATGGTGAGGCTTGCGACGGGAGTTAAGGAAGAAATCTCTTTCTTATTCAAAAATTTGATTGGTAAGTGCAACTACTGTGACTTGATTTACCATGAAAATGGAGTGTGTCTAGCAACTGACAGTAGAAGATCTTCCAATACGGAGATGTTGCCACCTAGAAGATTGGAGATCAAGAGCCCGTCTTTTGGTTTTGTCCAAAGTCAGTTTGAAAATGGTTTGTTCAAATTCCATGGACTTCAGACTCCTATACTGCCTTCAGTTGCTCGTTCTCTCTTTCATCCCAAAGAGCATGGAACCCGAAAGCCTATTGTTTTGAGGGGTACCGATGGTAGGTCTTCGTCTAGTAAGGAGGAGGACGGGTCTGCTTTGGCTTTGGTCCTCGTCGATGAAGTTGCTTCAGCTAAAAAAGAAAGACAACCCTCTGATTTTCAGTCTCCAAAAAAACTGAAAGTAATTTTACCTGAGTTGTTTGTTTGTTCCCAACTTACTGAAGTGCCTGCAAAGAAGCTTCGAGTGCCGGAATTCACCTCCAAGTTCACTGCTATATCATTGGGATTGATGGAAGCTCCAGGCAGCATCCTAGTGTCTAAGGCTGAGTTGGAAAATACCAACACTGAACCAAAGAAGAAGAAAGGTCAACCTCTTGGATCAAAGAGCAAGAAGCCACCAAAATCAAAGAAGATAGCGGATGCACAGGAAGCCAGCTTGGCCTTCTTGACAAAACCTCCTAGCCCTAGCATCAAGGGCAAGGAGATACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0010189 GO:0010236 GO:0016020 GO:0016740 GO:0016741 GO:0018130 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032259 GO:0042170 GO:0042180 GO:0042181 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051741 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25

Protein Analysis

327

Amino Acids

36.38

Weight (kDa)

9.46

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AciI	CCGC	1 cut(s)	908
AclWI	GGATC	2 cut(s)	166, 877
AcsI	RAATTY	3 cut(s)	274, 446, 743
AcuI	CTGAAG	5 cut(s)	236, 443, 462, 603, 732
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	3 cut(s)	181, 407, 552
AgsI	TTSAA	5 cut(s)	46, 95, 271, 431, 445
AjnI	CCWGG	1 cut(s)	790
AluBI	AGCT	5 cut(s)	151, 623, 730, 788, 927
AluI	AGCT	5 cut(s)	151, 623, 730, 788, 927
Alw26I	GTCTC	2 cut(s)	43, 660
AlwI	GGATC	2 cut(s)	166, 877
AoxI	GGCC	2 cut(s)	114, 930
ApeKI	GCWGC	1 cut(s)	795
ApoI	RAATTY	3 cut(s)	274, 446, 743
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	2 cut(s)	206, 352
Asp718I	GGTACC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	114, 598
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	238, 739
AvaII	GGWCC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	401
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	807
BccI	CCATC	3 cut(s)	116, 542, 775
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciT130I	CCWGG	1 cut(s)	792
BciVI	GTATCC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	2 cut(s)	43, 660
BfaI	CTAG	6 cut(s)	332, 378, 564, 803, 951, 957
BfuI	GTATCC	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	929
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	1 cut(s)	796
BlsI	GCNGC	1 cut(s)	797
Bme1390I	CCNGG	2 cut(s)	176, 792
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	2 cut(s)	114, 598
BmiI	GGNNCC	2 cut(s)	517, 544
BmrFI	CCNGG	2 cut(s)	176, 792
BmsI	GCATC	3 cut(s)	807, 901, 969
BpiI	GAAGAC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	451
BsaXI	ACNNNNNCTCC	4 cut(s)	566, 596, 931, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 407, 552
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	451
BseGI	GGATG	4 cut(s)	148, 499, 798, 916
BseLI	CCNNNNNNNGG	3 cut(s)	181, 407, 552
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	675, 807
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	807
BshFI	GGCC	2 cut(s)	116, 932
BshNI	GGYRCC	1 cut(s)	542
BsiSI	CCGG	2 cut(s)	175, 740
BslI	CCNNNNNNNGG	3 cut(s)	181, 407, 552
BsmAI	GTCTC	2 cut(s)	43, 660
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	116, 932
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	171, 193, 350, 390, 869
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	1 cut(s)	908
BspANI	GGCC	2 cut(s)	116, 932
BspCNI	CTCAG	2 cut(s)	676, 808
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	517, 544
BspPI	GGATC	2 cut(s)	166, 877
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	451
BssMI	GATC	5 cut(s)	171, 193, 350, 390, 869
BssT1I	CCWWGG	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	299, 344
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	234, 720, 925
BstDEI	CTNAG	3 cut(s)	684, 810, 816
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	4 cut(s)	148, 499, 798, 916
BstKTI	GATC	5 cut(s)	174, 196, 353, 393, 872
BstMAI	GTCTC	2 cut(s)	43, 660
BstMBI	GATC	5 cut(s)	171, 193, 350, 390, 869
BstMWI	GCNNNNNNNGC	4 cut(s)	736, 920, 929, 966
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	2 cut(s)	174, 790
BstV1I	GCAGC	1 cut(s)	807
BstV2I	GAAGAC	1 cut(s)	549
BstX2I	RGATCY	2 cut(s)	171, 350
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	2 cut(s)	171, 350
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	116, 932
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	4 cut(s)	148, 499, 798, 916
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	759, 834
Cac8I	GCNNGC	3 cut(s)	234, 720, 925
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	114, 598
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	4 cut(s)	191, 314, 452, 512
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	3 cut(s)	684, 810, 816
DpnI	GATC	5 cut(s)	173, 195, 352, 392, 871
DpnII	GATC	5 cut(s)	171, 193, 350, 390, 869
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	5 cut(s)	236, 443, 462, 603, 732
EcoRI	GAATTC	1 cut(s)	743
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	4 cut(s)	194, 317, 455, 515
FaiI	YATR	7 cut(s)	12, 192, 315, 453, 470, 513, 767
FatI	CATG	4 cut(s)	190, 313, 451, 511
Fnu4HI	GCNGC	1 cut(s)	796
FokI	GGATG	4 cut(s)	155, 486, 785, 923
FriOI	GRGCYC	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	796
FspBI	CTAG	6 cut(s)	332, 378, 564, 803, 951, 957
GluI	GCNGC	1 cut(s)	796
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	2 cut(s)	116, 932
HapII	CCGG	2 cut(s)	175, 740
Hin1II	CATG	4 cut(s)	194, 317, 455, 515
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HindIII	AAGCTT	2 cut(s)	149, 728
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	2 cut(s)	175, 740
HphI	GGTGA	2 cut(s)	238, 739
Hpy166II	GTNNAC	2 cut(s)	759, 860
Hpy188I	TCNGA	4 cut(s)	69, 216, 462, 646
Hpy188III	TCNNGA	4 cut(s)	191, 199, 394, 937
Hpy8I	GTNNAC	2 cut(s)	759, 860
Hpy99I	CGWCG	2 cut(s)	241, 608
HpyAV	CCTTC	3 cut(s)	217, 486, 943
HpyCH4III	ACNGT	2 cut(s)	299, 344
HpyCH4V	TGCA	4 cut(s)	4, 291, 722, 914
HpyF10VI	GCNNNNNNNGC	4 cut(s)	736, 920, 929, 966
HpyF3I	CTNAG	3 cut(s)	684, 810, 816
Hsp92II	CATG	4 cut(s)	194, 317, 455, 515
KpnI	GGTACC	1 cut(s)	546
Kzo9I	GATC	5 cut(s)	171, 193, 350, 390, 869
LmnI	GCTCC	2 cut(s)	28, 793
Lsp1109I	GCAGC	1 cut(s)	807
LweI	GCATC	3 cut(s)	807, 901, 969
MaeI	CTAG	6 cut(s)	332, 378, 564, 803, 951, 957
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	173, 195, 352, 392, 871
MboI	GATC	5 cut(s)	171, 193, 350, 390, 869
MflI	RGATCY	2 cut(s)	171, 350
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	5 cut(s)	137, 274, 446, 675, 743
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	801
MroXI	GAANNNNTTC	2 cut(s)	206, 352
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	318, 803
MspI	CCGG	2 cut(s)	175, 740
MspR9I	CCNGG	2 cut(s)	176, 792
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	4 cut(s)	736, 920, 929, 966
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	5 cut(s)	171, 193, 350, 390, 869
NlaIII	CATG	4 cut(s)	194, 317, 455, 515
NlaIV	GGNNCC	2 cut(s)	517, 544
NmuCI	GTSAC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	190
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	2 cut(s)	206, 352
PkrI	GCNGC	1 cut(s)	797
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	2 cut(s)	517, 544
PspPI	GGNCC	2 cut(s)	114, 598
PsuI	RGATCY	2 cut(s)	171, 350
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	2 cut(s)	318, 803
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	796
Sau3AI	GATC	5 cut(s)	171, 193, 350, 390, 869
Sau96I	GGNCC	2 cut(s)	114, 598
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	176, 792
SduI	GDGCHC	1 cut(s)	401
SfaNI	GCATC	3 cut(s)	807, 901, 969
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	2 cut(s)	318, 803
Sse9I	AATT	5 cut(s)	137, 274, 446, 675, 743
SsiI	CCGC	1 cut(s)	908
SspMI	CTAG	6 cut(s)	332, 378, 564, 803, 951, 957
StyD4I	CCNGG	2 cut(s)	174, 790
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	2 cut(s)	299, 344
TaqI	TCGA	4 cut(s)	135, 200, 606, 733
TasI	AATT	5 cut(s)	137, 274, 446, 675, 743
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	2 cut(s)	766, 841
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	795
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	330, 488, 624
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	2 cut(s)	766, 841
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	3 cut(s)	274, 446, 743
XmnI	GAANNNNTTC	2 cut(s)	206, 352
XspI	CTAG	6 cut(s)	332, 378, 564, 803, 951, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.