RchiOBHm_Chr4g0388681
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002098
Physical Location & Seq
Reverse (-)
3926736 .. 3930166
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36189

Sequence Viewer

Length: 957 bp
ATGGCTATTTCAATGCTCTATGGAGCTCAAAATATGAAACTCACTTCTGGCATAGCACCAACTGGGTTAGGTTTCGGGGGAAATTTTCAATATGGGTCTTTCCCCAAAAAGGTTTCAGTTAGTTATGGAAGGAATTCCAGGGCTAGAACTTTGGGACCCATATGCAGTGTCTCATCCTCAAGGCCTGCTTCTCAGCCGAGGTTTATACAGCACAAGCAAGAAGCATTTTGGTTCTATAGGTTTTTATCTGTAGTCTATGATCATGTGATAAACCCTGGGCATTGGACTGAGGATATGAGAGACGATGCTCTCGAGCCGGCTGATCTTTATGACAGGAATATGACAGTGGTAGATGTTGGAGGTGGAACTGGGTTCACAACACTGGGGATTGTGAAGCATGTGGATGCCAAAAATGTTACAATTCTTGACCAATCACCGCACCAGCTTGCCAAGGCTAAGGAGAAGGAGCCCTTGAAAGAGTGCAAGATTATCGAAGGTGATGCCGAGGATCTGCCATTCCCAACTGATTATGCGGATAGATATGTCTCTGCTGGAAGTATAGAGTACTGGCCGGATCCACAGCGTGGAATCAAGGAAGCATACAGGGTACTAAAAATAGGAGGAAAAGCCTGTCTTATAGGCCCTGTGTACCCAACCTTCTGGCTGTCTCGTTTTTTCGCAGACGTGTGGATGCTCTTCCCAACAGAGGAAGAATACATTGAGTGGTTCCAAAAGGCAGGTTTCAAAGATATTAAACTAAAAAGAATTGGTCCAAAGTGGTACCGTGGAGTTCGCCGGCATGGCCTGATTATGGGTTGCTCTGTGACAGGTGTGAAGCCCTTAAGTGGGGATTCCCCTCTCGAGCTTGGTCCAAAGGTTGAGGATGTGAGGAAGCCCGTCAATCCATTTGTGTTTCTTTTCCGGCTAATTCTTGGAGCAACTGCAGGAGCTTTGTAA

Protein Analysis

318

Amino Acids

35.58

Weight (kDa)

8.98

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 110 - 252 7.8e-06 Methyltransferase domain
Methyltransf_31 PF13847 111 - 215 1.3e-12 Methyltransferase domain
Ubie_methyltran PF01209 112 - 212 3e-12 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 116 - 208 3.4e-17 Methyltransferase domain
Methyltransf_11 PF08241 117 - 211 1.2e-19 Methyltransferase domain
Methyltransf_12 PF08242 117 - 209 2e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 728
Acc65I GGTACC 1 cut(s) 780
AccB1I GGYRCC 1 cut(s) 780
AccB7I CCANNNNNTGG 1 cut(s) 584
AciI CCGC 2 cut(s) 437, 533
AclWI GGATC 3 cut(s) 516, 569, 582
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 2 cut(s) 82, 133
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 4 cut(s) 566, 609, 650, 782
AfiI CCNNNNNNNGG 6 cut(s) 109, 584, 706, 811, 845, 846
AflII CTTAAG 1 cut(s) 841
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 4 cut(s) 12, 89, 475, 745
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 2 cut(s) 137, 274
AluBI AGCT 4 cut(s) 26, 445, 865, 950
AluI AGCT 4 cut(s) 26, 445, 865, 950
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 4 cut(s) 175, 294, 550, 672
AlwI GGATC 3 cut(s) 516, 569, 582
Ama87I CYCGRG 2 cut(s) 311, 860
AoxI GGCC 4 cut(s) 182, 569, 640, 802
ApoI RAATTY 2 cut(s) 82, 133
Asp700I GAANNNNTTC 1 cut(s) 133
Asp718I GGTACC 1 cut(s) 780
AspS9I GGNCC 4 cut(s) 155, 641, 770, 869
AsuHPI GGTGA 2 cut(s) 426, 509
AvaI CYCGRG 2 cut(s) 311, 860
AvaII GGWCC 3 cut(s) 155, 770, 869
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 780
BanII GRGCYC 2 cut(s) 28, 471
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
Bbv12I GWGCWC 1 cut(s) 28
BcgI CGANNNNNNTGC 4 cut(s) 472, 482, 506, 516
BciT130I CCWGG 2 cut(s) 139, 276
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 4 cut(s) 175, 294, 550, 672
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 3 cut(s) 235, 249, 942
BfrI CTTAAG 1 cut(s) 841
BfuAI ACCTGC 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 801
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 139, 276
Bme18I GGWCC 3 cut(s) 155, 770, 869
BmeT110I CYCGRG 2 cut(s) 311, 860
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 4 cut(s) 155, 641, 770, 869
BmiI GGNNCC 6 cut(s) 156, 157, 468, 576, 728, 782
BmrFI CCNGG 2 cut(s) 139, 276
BmrI ACTGGG 3 cut(s) 72, 378, 392
BmsI GCATC 4 cut(s) 295, 394, 490, 681
BmuI ACTGGG 3 cut(s) 72, 378, 392
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 163
BsaJI CCNNGG 7 cut(s) 138, 197, 274, 275, 450, 504, 784
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 584, 706, 811, 845, 846
Bse118I RCCGGY 2 cut(s) 316, 795
Bse1I ACTGG 4 cut(s) 67, 373, 387, 572
BseBI CCWGG 2 cut(s) 139, 276
BseDI CCNNGG 7 cut(s) 138, 197, 274, 275, 450, 504, 784
BseGI GGATG 4 cut(s) 173, 409, 696, 889
BseLI CCNNNNNNNGG 6 cut(s) 109, 584, 706, 811, 845, 846
BseMII CTCAG 2 cut(s) 206, 279
BseNI ACTGG 4 cut(s) 67, 373, 387, 572
BshFI GGCC 4 cut(s) 184, 571, 642, 804
BshNI GGYRCC 1 cut(s) 780
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 2 cut(s) 311, 860
BsiSI CCGG 4 cut(s) 317, 572, 796, 922
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 6 cut(s) 109, 584, 706, 811, 845, 846
BsmAI GTCTC 4 cut(s) 175, 294, 550, 672
BsmBI CGTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 4 cut(s) 184, 571, 642, 804
BsoBI CYCGRG 2 cut(s) 311, 860
Bsp1286I GDGCHC 2 cut(s) 28, 471
Bsp143I GATC 4 cut(s) 259, 322, 508, 574
BspACI CCGC 2 cut(s) 437, 533
BspANI GGCC 4 cut(s) 184, 571, 642, 804
BspCNI CTCAG 2 cut(s) 205, 280
BspLI GGNNCC 6 cut(s) 156, 157, 468, 576, 728, 782
BspMAI CTGCAG 1 cut(s) 946
BspMI ACCTGC 1 cut(s) 728
BspPI GGATC 3 cut(s) 516, 569, 582
BspQI GCTCTTC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 780
BspTI CTTAAG 1 cut(s) 841
BsrFI RCCGGY 2 cut(s) 316, 795
BsrI ACTGG 4 cut(s) 67, 373, 387, 572
BssAI RCCGGY 2 cut(s) 316, 795
BssECI CCNNGG 7 cut(s) 138, 197, 274, 275, 450, 504, 784
BssMI GATC 4 cut(s) 259, 322, 508, 574
BssT1I CCWWGG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 139, 276
Bst4CI ACNGT 2 cut(s) 346, 785
Bst6I CTCTTC 1 cut(s) 701
BstAFI CTTAAG 1 cut(s) 841
BstC8I GCNNGC 4 cut(s) 186, 318, 447, 797
BstDEI CTNAG 3 cut(s) 192, 288, 456
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 4 cut(s) 173, 409, 696, 889
BstKTI GATC 4 cut(s) 262, 325, 511, 577
BstMAI GTCTC 4 cut(s) 175, 294, 550, 672
BstMBI GATC 4 cut(s) 259, 322, 508, 574
BstMWI GCNNNNNNNGC 1 cut(s) 801
BstNI CCWGG 2 cut(s) 139, 276
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 137, 274
BstSFI CTRYAG 3 cut(s) 235, 249, 942
BstX2I RGATCY 2 cut(s) 508, 574
BstXI CCANNNNNNTGG 1 cut(s) 660
BstYI RGATCY 2 cut(s) 508, 574
BsuRI GGCC 4 cut(s) 184, 571, 642, 804
BtgI CCRYGG 1 cut(s) 784
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 4 cut(s) 173, 409, 696, 889
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 351, 380
BveI ACCTGC 1 cut(s) 728
Cac8I GCNNGC 4 cut(s) 186, 318, 447, 797
Cfr10I RCCGGY 2 cut(s) 316, 795
Cfr13I GGNCC 4 cut(s) 155, 641, 770, 869
Csp6I GTAC 4 cut(s) 565, 608, 649, 781
CviAII CATG 3 cut(s) 263, 398, 800
CviQI GTAC 4 cut(s) 565, 608, 649, 781
DdeI CTNAG 3 cut(s) 192, 288, 456
DpnI GATC 4 cut(s) 261, 324, 510, 576
DpnII GATC 4 cut(s) 259, 322, 508, 574
DraIII CACNNNGTG 1 cut(s) 584
EaeI YGGCCR 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Ecl136II GAGCTC 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 1 cut(s) 184
Eco24I GRGCYC 2 cut(s) 28, 471
Eco47I GGWCC 3 cut(s) 155, 770, 869
Eco53kI GAGCTC 1 cut(s) 26
Eco88I CYCGRG 2 cut(s) 311, 860
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 2 cut(s) 155, 641
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 2 cut(s) 137, 274
EcoT14I CCWWGG 1 cut(s) 450
EcoT38I GRGCYC 2 cut(s) 28, 471
ErhI CCWWGG 1 cut(s) 450
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 3 cut(s) 266, 401, 803
FalI AAGNNNNNCTT 6 cut(s) 172, 204, 455, 487, 618, 650
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 262, 397, 799
FauNDI CATATG 1 cut(s) 161
FbaI TGATCA 1 cut(s) 259
FokI GGATG 4 cut(s) 160, 416, 703, 896
FriOI GRGCYC 2 cut(s) 28, 471
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 4 cut(s) 184, 571, 642, 804
HapII CCGG 4 cut(s) 317, 572, 796, 922
Hin1II CATG 3 cut(s) 266, 401, 803
HinfI GANTC 2 cut(s) 588, 851
HpaII CCGG 4 cut(s) 317, 572, 796, 922
HphI GGTGA 2 cut(s) 426, 509
Hpy166II GTNNAC 2 cut(s) 375, 649
Hpy188III TCNNGA 3 cut(s) 311, 425, 860
Hpy8I GTNNAC 2 cut(s) 375, 649
HpyAV CCTTC 4 cut(s) 123, 457, 488, 667
HpyCH4III ACNGT 2 cut(s) 346, 785
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 3 cut(s) 165, 483, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 801
HpyF3I CTNAG 3 cut(s) 192, 288, 456
HpySE526I ACGT 1 cut(s) 684
Hsp92II CATG 3 cut(s) 266, 401, 803
KflI GGGWCCC 1 cut(s) 155
KpnI GGTACC 1 cut(s) 784
KroI GCCGGC 2 cut(s) 316, 795
KroNI GCCGGC 2 cut(s) 318, 797
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 4 cut(s) 259, 322, 508, 574
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 4 cut(s) 23, 466, 935, 947
LweI GCATC 4 cut(s) 295, 394, 490, 681
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 2 cut(s) 415, 823
MalI GATC 4 cut(s) 261, 324, 510, 576
MboI GATC 4 cut(s) 259, 322, 508, 574
MboII GAAGA 2 cut(s) 688, 722
MflI RGATCY 2 cut(s) 508, 574
MhlI GDGCHC 2 cut(s) 28, 471
MluCI AATT 5 cut(s) 82, 133, 420, 765, 927
MmeI TCCRAC 1 cut(s) 337
MroNI GCCGGC 2 cut(s) 316, 795
MroXI GAANNNNTTC 1 cut(s) 133
MseI TTAA 2 cut(s) 753, 842
MslI CAYNNNNRTG 1 cut(s) 402
MspCI CTTAAG 1 cut(s) 841
MspI CCGG 4 cut(s) 317, 572, 796, 922
MspR9I CCNGG 2 cut(s) 139, 276
MvaI CCWGG 2 cut(s) 139, 276
MwoI GCNNNNNNNGC 1 cut(s) 801
NaeI GCCGGC 2 cut(s) 318, 797
NdeI CATATG 1 cut(s) 161
NdeII GATC 4 cut(s) 259, 322, 508, 574
NgoMIV GCCGGC 2 cut(s) 316, 795
NlaIII CATG 3 cut(s) 266, 401, 803
NlaIV GGNNCC 6 cut(s) 156, 157, 468, 576, 728, 782
NmeAIII GCCGAG 2 cut(s) 222, 529
NmuCI GTSAC 1 cut(s) 823
NspI RCATGY 1 cut(s) 401
PaeR7I CTCGAG 2 cut(s) 311, 860
PasI CCCWGGG 1 cut(s) 275
PceI AGGCCT 1 cut(s) 184
PciSI GCTCTTC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 2 cut(s) 318, 797
PdmI GAANNNNTTC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 588, 851
PflMI CCANNNNNTGG 1 cut(s) 584
PpuMI RGGWCCY 1 cut(s) 155
Psp124BI GAGCTC 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 137, 274
PspGI CCWGG 2 cut(s) 137, 274
PspN4I GGNNCC 6 cut(s) 156, 157, 468, 576, 728, 782
PspPI GGNCC 4 cut(s) 155, 641, 770, 869
PspPPI RGGWCCY 1 cut(s) 155
PstI CTGCAG 1 cut(s) 946
PsuI RGATCY 2 cut(s) 508, 574
RsaI GTAC 4 cut(s) 566, 609, 650, 782
RsaNI GTAC 4 cut(s) 565, 608, 649, 781
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 2 cut(s) 753, 842
Sau3AI GATC 4 cut(s) 259, 322, 508, 574
Sau96I GGNCC 4 cut(s) 155, 641, 770, 869
ScaI AGTACT 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 139, 276
SduI GDGCHC 2 cut(s) 28, 471
SfaNI GCATC 4 cut(s) 295, 394, 490, 681
SfcI CTRYAG 3 cut(s) 235, 249, 942
Sfr274I CTCGAG 2 cut(s) 311, 860
SinI GGWCC 3 cut(s) 155, 770, 869
SlaI CTCGAG 2 cut(s) 311, 860
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 4 cut(s) 178, 311, 841, 860
SmoI CTYRAG 4 cut(s) 178, 311, 841, 860
Sse9I AATT 5 cut(s) 82, 133, 420, 765, 927
SseBI AGGCCT 1 cut(s) 184
SsiI CCGC 2 cut(s) 437, 533
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 28
StuI AGGCCT 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 137, 274
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 2 cut(s) 346, 785
TaiI ACGT 1 cut(s) 687
TaqI TCGA 3 cut(s) 312, 492, 861
TasI AATT 5 cut(s) 82, 133, 420, 765, 927
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 588, 851
Tru1I TTAA 2 cut(s) 753, 842
Tru9I TTAA 2 cut(s) 753, 842
TscAI CASTG 3 cut(s) 172, 351, 387
TseFI GTSAC 1 cut(s) 823
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 3 cut(s) 172, 351, 387
Van91I CCANNNNNTGG 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 841
VpaK11BI GGWCC 3 cut(s) 155, 770, 869
XapI RAATTY 2 cut(s) 82, 133
XceI RCATGY 1 cut(s) 401
XhoI CTCGAG 2 cut(s) 311, 860
XmnI GAANNNNTTC 1 cut(s) 133
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.