Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Reverse (-)

13065235 .. 13067473

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATCGATGTTATAAACCCGGGGCATTGGACTGAGGATATGCGGAATGACGCGCTCGAGCCCGCGGATCTTTACGATAGGAATATGGTGGTGGTGGATGTTGGAGGTGGAACTGGGTTTACGACTCTTGGCATTGTTAAGCATGTGGATGCCAAGAATGTGACCATTCTCGACCAATCGCCGCACCAGCTTGCCAAGGCTAAGGAGAAGGAGCCCTTGAAAGAATGTAAGATCATTGAAGGGGATGCGGAGGATCTGCCGTTCCCAACCGATTATGCAGATCGATATGTCTCTGCTGGAAGTATTGAGTACTGGCCCGACCCCCAGCGTGGAATCAAGGAAGCATACAGGGTACTAAAAATAGGAGGAAAGGCTTGCCTCATAGGCCCCGTGTACCCAACCTTTTGGCTGTCTCGTTTCTTTGCAGATGTGTGGATGCTCTTCCCAAAGGAGGAGGAGTACATTGAGTGGTTCAAAAATGCTGGTTTCAAAGATGTTCAACTGAAAAGGATTGGTCCAAAATGGTACCGTGGTGTCCGCCGCCATGGCTTGATTATGGGTTGCTCCGTGACAGGTGTGAAGCCCTTAAGTGGGGACTCCCCTCTTCAGCTTGGTCCAAAGGTGGAGGACGTAAGGAAGCCTGTGAATCCCTTGGTGTTTCTTTTTCGGCTCATTCTCGGTGCAACTGCGGGAGCTTACTATGTGCTGGTTCCAATTTACATGTGGATTAAAGATCAAGTCGTTCCACAAGGCCAACCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0016740 GO:0016741 GO:0032259 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

CTP_transf_like Methyltransf_11 Methyltransf_25

Protein Analysis

255

Amino Acids

28.65

Weight (kDa)

6.45

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AccII	CGCG	2 cut(s)	53, 65
AciI	CCGC	8 cut(s)	43, 63, 65, 182, 248, 538, 541, 689
AclWI	GGATC	2 cut(s)	75, 261
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	5 cut(s)	311, 354, 395, 461, 527
AfiI	CCNNNNNNNGG	4 cut(s)	329, 451, 590, 591
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	5 cut(s)	220, 239, 475, 490, 500
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	3 cut(s)	190, 610, 695
AluI	AGCT	3 cut(s)	190, 610, 695
Alw26I	GTCTC	2 cut(s)	295, 417
AlwI	GGATC	2 cut(s)	75, 261
Ama87I	CYCGRG	2 cut(s)	19, 56
AoxI	GGCC	3 cut(s)	314, 385, 751
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	4 cut(s)	315, 386, 515, 614
AsuC2I	CCSGG	2 cut(s)	20, 21
AvaI	CYCGRG	2 cut(s)	19, 56
AvaII	GGWCC	2 cut(s)	515, 614
BaeI	ACNNNNGTAYC	2 cut(s)	517, 550
BanI	GGYRCC	1 cut(s)	525
BanII	GRGCYC	2 cut(s)	63, 216
BceAI	ACGGC	1 cut(s)	244
BcnI	CCSGG	2 cut(s)	20, 21
BcoDI	GTCTC	2 cut(s)	295, 417
BfrI	CTTAAG	1 cut(s)	586
BglI	GCCNNNNNGGC	2 cut(s)	384, 546
BisI	GCNGC	2 cut(s)	182, 541
BlsI	GCNGC	2 cut(s)	183, 542
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	20, 21
Bme18I	GGWCC	2 cut(s)	515, 614
BmeT110I	CYCGRG	2 cut(s)	19, 56
BmgT120I	GGNCC	4 cut(s)	315, 386, 515, 614
BmiI	GGNNCC	4 cut(s)	213, 388, 527, 711
BmrFI	CCNGG	2 cut(s)	20, 21
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	139, 235, 426
BmuI	ACTGGG	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	201
BpuMI	CCSGG	2 cut(s)	20, 21
Bsa29I	ATCGAT	2 cut(s)	6, 283
BsaJI	CCNNGG	7 cut(s)	19, 20, 63, 195, 529, 544, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 451, 590, 591
Bse1I	ACTGG	2 cut(s)	118, 317
BseCI	ATCGAT	2 cut(s)	6, 283
BseDI	CCNNGG	7 cut(s)	19, 20, 63, 195, 529, 544, 651
BseGI	GGATG	4 cut(s)	103, 154, 250, 441
BseLI	CCNNNNNNNGG	4 cut(s)	329, 451, 590, 591
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	118, 317
BseRI	GAGGAG	2 cut(s)	467, 470
BseYI	CCCAGC	1 cut(s)	324
Bsh1236I	CGCG	2 cut(s)	53, 65
BshFI	GGCC	3 cut(s)	316, 387, 753
BshNI	GGYRCC	1 cut(s)	525
BshVI	ATCGAT	2 cut(s)	6, 283
BsiHKCI	CYCGRG	2 cut(s)	19, 56
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	4 cut(s)	329, 451, 590, 591
BsmAI	GTCTC	2 cut(s)	295, 417
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	3 cut(s)	316, 387, 753
BsoBI	CYCGRG	2 cut(s)	19, 56
Bsp1286I	GDGCHC	2 cut(s)	63, 216
Bsp143I	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	8 cut(s)	43, 63, 65, 182, 248, 538, 541, 689
BspANI	GGCC	3 cut(s)	316, 387, 753
BspCNI	CTCAG	1 cut(s)	25
BspDI	ATCGAT	2 cut(s)	6, 283
BspFNI	CGCG	2 cut(s)	53, 65
BspLI	GGNNCC	4 cut(s)	213, 388, 527, 711
BspPI	GGATC	2 cut(s)	75, 261
BspQI	GCTCTTC	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	118, 317
BssECI	CCNNGG	7 cut(s)	19, 20, 63, 195, 529, 544, 651
BssMI	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
BssT1I	CCWWGG	3 cut(s)	195, 544, 651
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	2 cut(s)	446, 609
BstAFI	CTTAAG	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	63, 192, 376
BstDEI	CTNAG	2 cut(s)	33, 201
BstDSI	CCRYGG	3 cut(s)	63, 529, 544
BstF5I	GGATG	4 cut(s)	103, 154, 250, 441
BstFNI	CGCG	2 cut(s)	53, 65
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	6 cut(s)	6, 70, 234, 256, 283, 736
BstMAI	GTCTC	2 cut(s)	295, 417
BstMBI	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 384, 546
BstNSI	RCATGY	2 cut(s)	146, 724
BstSCI	CCNGG	2 cut(s)	18, 19
BstUI	CGCG	2 cut(s)	53, 65
BstX2I	RGATCY	2 cut(s)	67, 253
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstYI	RGATCY	2 cut(s)	67, 253
Bsu15I	ATCGAT	2 cut(s)	6, 283
BsuRI	GGCC	3 cut(s)	316, 387, 753
BsuTUI	ATCGAT	2 cut(s)	6, 283
BtgI	CCRYGG	3 cut(s)	63, 529, 544
BtsCI	GGATG	4 cut(s)	103, 154, 250, 441
Cac8I	GCNNGC	3 cut(s)	63, 192, 376
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	315, 386, 515, 614
Cfr42I	CCGCGG	1 cut(s)	66
Cfr9I	CCCGGG	1 cut(s)	19
ClaI	ATCGAT	2 cut(s)	6, 283
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	5 cut(s)	310, 353, 394, 460, 526
CviAII	CATG	3 cut(s)	143, 545, 721
CviQI	GTAC	5 cut(s)	310, 353, 394, 460, 526
DdeI	CTNAG	2 cut(s)	33, 201
DpnI	GATC	6 cut(s)	5, 69, 233, 255, 282, 735
DpnII	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
Eam1104I	CTCTTC	2 cut(s)	446, 609
EarI	CTCTTC	2 cut(s)	446, 609
EciI	GGCGGA	1 cut(s)	527
Eco130I	CCWWGG	3 cut(s)	195, 544, 651
Eco24I	GRGCYC	2 cut(s)	63, 216
Eco47I	GGWCC	2 cut(s)	515, 614
Eco57I	CTGAAG	1 cut(s)	590
Eco88I	CYCGRG	2 cut(s)	19, 56
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	3 cut(s)	195, 544, 651
EcoT38I	GRGCYC	2 cut(s)	63, 216
ErhI	CCWWGG	3 cut(s)	195, 544, 651
FaeI	CATG	3 cut(s)	146, 548, 724
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	3 cut(s)	142, 544, 720
FauI	CCCGC	2 cut(s)	70, 682
Fnu4HI	GCNGC	2 cut(s)	182, 541
FokI	GGATG	4 cut(s)	110, 161, 257, 448
FriOI	GRGCYC	2 cut(s)	63, 216
Fsp4HI	GCNGC	2 cut(s)	182, 541
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	2 cut(s)	182, 541
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	3 cut(s)	316, 387, 753
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	3 cut(s)	146, 548, 724
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	4 cut(s)	124, 333, 596, 646
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	120, 394
Hpy188I	TCNGA	1 cut(s)	764
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	120, 394
HpyAV	CCTTC	2 cut(s)	202, 233
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	3 cut(s)	278, 425, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 384, 546
HpyF3I	CTNAG	2 cut(s)	33, 201
HpySE526I	ACGT	1 cut(s)	630
Hsp92II	CATG	3 cut(s)	146, 548, 724
HspAI	GCGC	1 cut(s)	53
KpnI	GGTACC	1 cut(s)	529
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	3 cut(s)	211, 569, 692
LweI	GCATC	3 cut(s)	139, 235, 426
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	160, 568
MalI	GATC	6 cut(s)	5, 69, 233, 255, 282, 735
MboI	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
MboII	GAAGA	2 cut(s)	433, 596
MflI	RGATCY	2 cut(s)	67, 253
MhlI	GDGCHC	2 cut(s)	63, 216
MluCI	AATT	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	118, 590
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	9 cut(s)	28, 98, 244, 359, 389, 445, 448, 612, 619
MseI	TTAA	3 cut(s)	138, 587, 729
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	20, 21
MvnI	CGCG	2 cut(s)	53, 65
MwoI	GCNNNNNNNGC	3 cut(s)	187, 384, 546
NciI	CCSGG	2 cut(s)	20, 21
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
NlaIII	CATG	3 cut(s)	146, 548, 724
NlaIV	GGNNCC	4 cut(s)	213, 388, 527, 711
NmuCI	GTSAC	2 cut(s)	160, 568
NspI	RCATGY	2 cut(s)	146, 724
PaeR7I	CTCGAG	1 cut(s)	56
PciI	ACATGT	1 cut(s)	720
PciSI	GCTCTTC	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	333, 646
PkrI	GCNGC	2 cut(s)	183, 542
PleI	GAGTC	2 cut(s)	118, 590
PpsI	GAGTC	2 cut(s)	118, 590
PscI	ACATGT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	324
PspN4I	GGNNCC	4 cut(s)	213, 388, 527, 711
PspPI	GGNCC	4 cut(s)	315, 386, 515, 614
PspXI	VCTCGAGB	1 cut(s)	56
PsrI	GAACNNNNNNTAC	2 cut(s)	103, 135
PsuI	RGATCY	2 cut(s)	67, 253
RsaI	GTAC	5 cut(s)	311, 354, 395, 461, 527
RsaNI	GTAC	5 cut(s)	310, 353, 394, 460, 526
RseI	CAYNNNNRTG	1 cut(s)	147
SacII	CCGCGG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	3 cut(s)	138, 587, 729
SatI	GCNGC	2 cut(s)	182, 541
Sau3AI	GATC	6 cut(s)	3, 67, 231, 253, 280, 733
Sau96I	GGNCC	4 cut(s)	315, 386, 515, 614
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	2 cut(s)	118, 590
ScrFI	CCNGG	2 cut(s)	20, 21
SduI	GDGCHC	2 cut(s)	63, 216
SetI	ASST	9 cut(s)	109, 192, 404, 577, 612, 624, 633, 697, 760
SfaNI	GCATC	3 cut(s)	139, 235, 426
Sfr274I	CTCGAG	1 cut(s)	56
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	2 cut(s)	515, 614
SlaI	CTCGAG	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	56, 586
SmoI	CTYRAG	2 cut(s)	56, 586
Sse9I	AATT	1 cut(s)	714
SsiI	CCGC	8 cut(s)	43, 63, 65, 182, 248, 538, 541, 689
StyD4I	CCNGG	2 cut(s)	18, 19
StyI	CCWWGG	3 cut(s)	195, 544, 651
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	4 cut(s)	6, 57, 171, 283
TasI	AATT	1 cut(s)	714
TatI	WGTACW	2 cut(s)	309, 459
TauI	GCSGC	2 cut(s)	184, 543
TfiI	GAWTC	2 cut(s)	333, 646
Tru1I	TTAA	3 cut(s)	138, 587, 729
Tru9I	TTAA	3 cut(s)	138, 587, 729
TseFI	GTSAC	2 cut(s)	160, 568
Tsp45I	GTSAC	2 cut(s)	160, 568
TspGWI	ACGGA	1 cut(s)	556
TspMI	CCCGGG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	515, 614
XceI	RCATGY	2 cut(s)	146, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XhoI	CTCGAG	1 cut(s)	56
XmaI	CCCGGG	1 cut(s)	19
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.