Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002098

Physical Location & Seq

Genomic Coordinates Forward (+)

20732460 .. 20734724

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTCTCTGCAATGCTCAATGGGGCTGAGAACCTCTCACTCATCAGAGGCATAACCCCAAACGGGTTGGGTTTCATGGGGTCAGATCTTCATGGGAAGCAATTTCTGAAGATGGGTTTAGTTTCAAGTACAAGAATTTCCAAGTCTTGCACCAGAACCATTGTGCCCAAGTGCAGCTTCTCAGCTTCTAGGCCAGCATCCCAGCCTAGGTTCATTCAGCATAAGAAAGAGGCTTTTTGGTTCTATAGGTTCCTCTCAATTGTGTATGATCATGTCATAAACCCTGGGCATTGGACTGAGGACATGAGGGATGAGGCACTTGAACCAGCTGATCTCAGTAATAGGAATATGATTGTTGTAGATGTTGGTGGTGGTACTGGCTTCACCACTTTGGGTATAGTTAAGCATGTGGATGCCAAGAATGTCACCATTCTTGACCAGTCCCCTCATCAGCTCGCCAAGGCAAAGCAGAAGGAGCCCTTGAAGGATTGCAAGATTATTGAGGGTGATGCTGAGGACCTCCCTTTTCGAACTGATTACGCTGATCGATATGTATCTGCTGGAAGCATTGAGTACTGGCCAGACCCACAGCGTGGCATCAAGGAAGCATACAGGGTCTTAAAACTTGGAGGAAAAGCATGCTTAATTGGTCCTGTGTACCCAACATTTTGGTTATCTCGCTTCTTTGCAGATGTGTGGATGCTTTTCCCAAAGGAGGAAGAGTACATTGAATGGTTCCAAAAGGCAGGGTTTAAAGATGTCCAACTGAAAAGAATTGGCCCAAAATGGTATCGTGGGGTTCGCCGGCATGGATTGATAATGGGATGTTCTGTAACAGGCGTTAAACCAGCATCCGGGGATTCTCCTTTACAGCTTGGTCCAAAAGAAGAGGATGTGACAAAGCCTGTAAATCCGTGGTCGTTCTTTGTGCGGTTCATCTTGGGTGTCATGGCAGCAACATACTTTGTTCTGGTGCCTATATACATGTGGCTCAAGGATCAAATTGTACCCAAAGGTCAACCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006732 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0009987 GO:0010189 GO:0010236 GO:0016020 GO:0016740 GO:0016741 GO:0018130 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032259 GO:0042170 GO:0042180 GO:0042181 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0051186 GO:0051188 GO:0051741 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25

Protein Analysis

343

Amino Acids

38.6

Weight (kDa)

9.19

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63410
fragaria_vesca	FvH4_2g22850 FvH4_4g01770
malus_domestica	MD03G1256900.v1.1 MD11G1277500.v1.1 MD13G1201900.v1.1 MD16G1202200.v1.1
prunus_persica	Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.1G023700_v2.0.a1 Prupe.8G233800_v2.0.a1
pyrus_communis	pycom03g20360 pycom13g17530 pycom16g17060
rosa_chinensis	RchiOBHm_Chr4g0388681 RchiOBHm_Chr4g0388811 RchiOBHm_Chr6g0289771
rosa_laevigata	RLG00000010027 RLG00000012268
rosa_multiflora	Rmu_co8119594.1_g000001 Rmu_sc0000697.1_g000014 Rmu_sc0004459.1_g000002 Rmu_sc0005640.1_g000008 Rmu_sc0016023.1_g000001 Rmu_sc0027068.1_g000001
rosa_roxburghii	Rroxscaffold_5G00335090 Rroxscaffold_7G00177560 Rroxscaffold_7G00178080
rosa_rugosa	Rorug03G0320000 Rorug06G0206500 Rorug06G0206600
rosa_samantha	Rh4AG024800 Rh4BG017800 Rh4CG026800 Rh4CG027500 Rh4DG018100 Rh6AG318300 Rh6BG325600 Rh6CG331400 Rh6DG316900
rosa_wichuraiana	Rw4G001730 Rw4G001770 Rw6G027460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	973
AccB7I	CCANNNNNTGG	1 cut(s)	593
AciI	CCGC	1 cut(s)	931
AclWI	GGATC	1 cut(s)	1005
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	6 cut(s)	130, 376, 575, 659, 725, 1008
AfiI	CCNNNNNNNGG	5 cut(s)	63, 207, 593, 715, 854
AflIII	ACRYGT	1 cut(s)	984
AgsI	TTSAA	4 cut(s)	126, 323, 484, 731
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	177, 185, 329, 454, 874
AluI	AGCT	5 cut(s)	177, 185, 329, 454, 874
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	1005
AoxI	GGCC	3 cut(s)	191, 578, 778
ApeKI	GCWGC	2 cut(s)	174, 953
ApoI	RAATTY	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	206
AspS9I	GGNCC	4 cut(s)	517, 650, 779, 878
AsuC2I	CCSGG	1 cut(s)	856
AsuHPI	GGTGA	3 cut(s)	376, 418, 518
AsuII	TTCGAA	1 cut(s)	529
AvaII	GGWCC	3 cut(s)	517, 650, 878
AvrII	CCTAGG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	973
BanII	GRGCYC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	186, 965
BccI	CCATC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	189, 207
BfmI	CTRYAG	1 cut(s)	244
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	2 cut(s)	175, 954
BlnI	CCTAGG	1 cut(s)	206
BlsI	GCNGC	2 cut(s)	176, 955
BmcAI	AGTACT	1 cut(s)	575
Bme1390I	CCNGG	2 cut(s)	285, 856
Bme18I	GGWCC	3 cut(s)	517, 650, 878
BmgT120I	GGNCC	4 cut(s)	517, 650, 779, 878
BmiI	GGNNCC	4 cut(s)	251, 477, 737, 975
BmrFI	CCNGG	2 cut(s)	285, 856
BmsI	GCATC	6 cut(s)	206, 403, 499, 606, 690, 860
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	977
BpuMI	CCSGG	1 cut(s)	856
Bsa29I	ATCGAT	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	6 cut(s)	206, 283, 284, 459, 855, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	5 cut(s)	63, 207, 593, 715, 854
Bse118I	RCCGGY	1 cut(s)	804
Bse1I	ACTGG	3 cut(s)	382, 439, 581
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	6 cut(s)	206, 283, 284, 459, 855, 914
BseGI	GGATG	7 cut(s)	197, 316, 418, 705, 830, 851, 898
BseJI	GATNNNNATC	1 cut(s)	553
BseLI	CCNNNNNNNGG	5 cut(s)	63, 207, 593, 715, 854
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	5 cut(s)	18, 195, 288, 349, 504
BseNI	ACTGG	3 cut(s)	382, 439, 581
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	186, 965
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	193, 580, 780
BshNI	GGYRCC	1 cut(s)	973
BshVI	ATCGAT	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	805, 855
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	5 cut(s)	63, 207, 593, 715, 854
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	193, 580, 780
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	168, 480
Bsp143I	GATC	5 cut(s)	85, 268, 331, 544, 997
BspACI	CCGC	1 cut(s)	931
BspANI	GGCC	3 cut(s)	193, 580, 780
BspCNI	CTCAG	5 cut(s)	19, 194, 289, 348, 505
BspDI	ATCGAT	1 cut(s)	547
BspLI	GGNNCC	4 cut(s)	251, 477, 737, 975
BspPI	GGATC	1 cut(s)	1005
BspT104I	TTCGAA	1 cut(s)	529
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	804
BsrI	ACTGG	3 cut(s)	382, 439, 581
BssAI	RCCGGY	1 cut(s)	804
BssECI	CCNNGG	6 cut(s)	206, 283, 284, 459, 855, 914
BssMI	GATC	5 cut(s)	85, 268, 331, 544, 997
BssT1I	CCWWGG	2 cut(s)	206, 459
Bst2UI	CCWGG	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	714, 882
BstBI	TTCGAA	1 cut(s)	529
BstC8I	GCNNGC	4 cut(s)	195, 456, 640, 806
BstDEI	CTNAG	5 cut(s)	27, 181, 297, 335, 513
BstDSI	CCRYGG	1 cut(s)	914
BstF5I	GGATG	7 cut(s)	197, 316, 418, 705, 830, 851, 898
BstKTI	GATC	5 cut(s)	88, 271, 334, 547, 1000
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	5 cut(s)	85, 268, 331, 544, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	475
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	3 cut(s)	410, 642, 988
BstSCI	CCNGG	2 cut(s)	283, 854
BstSFI	CTRYAG	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	186, 965
BstX2I	RGATCY	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	193, 580, 780
BsuTUI	ATCGAT	1 cut(s)	547
BtgI	CCRYGG	1 cut(s)	914
BtsCI	GGATG	7 cut(s)	197, 316, 418, 705, 830, 851, 898
Cac8I	GCNNGC	4 cut(s)	195, 456, 640, 806
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	4 cut(s)	517, 650, 779, 878
ClaI	ATCGAT	1 cut(s)	547
Csp6I	GTAC	6 cut(s)	129, 375, 574, 658, 724, 1007
CviAII	CATG	9 cut(s)	76, 92, 272, 304, 407, 639, 809, 949, 985
CviQI	GTAC	6 cut(s)	129, 375, 574, 658, 724, 1007
DdeI	CTNAG	5 cut(s)	27, 181, 297, 335, 513
DpnI	GATC	5 cut(s)	87, 270, 333, 546, 999
DpnII	GATC	5 cut(s)	85, 268, 331, 544, 997
DraI	TTTAAA	1 cut(s)	754
DraIII	CACNNNGTG	1 cut(s)	593
EaeI	YGGCCR	1 cut(s)	578
Eam1104I	CTCTTC	2 cut(s)	714, 882
EarI	CTCTTC	2 cut(s)	714, 882
Eco130I	CCWWGG	2 cut(s)	206, 459
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	3 cut(s)	517, 650, 878
Eco57I	CTGAAG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	206, 459
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	2 cut(s)	206, 459
FaeI	CATG	9 cut(s)	79, 95, 275, 307, 410, 642, 812, 952, 988
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 464, 496
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	9 cut(s)	75, 91, 271, 303, 406, 638, 808, 948, 984
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	175, 954
FokI	GGATG	7 cut(s)	184, 323, 425, 712, 837, 838, 905
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	175, 954
FspBI	CTAG	2 cut(s)	189, 207
GluI	GCNGC	2 cut(s)	175, 954
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	193, 580, 780
HapII	CCGG	2 cut(s)	805, 855
Hin1II	CATG	9 cut(s)	79, 95, 275, 307, 410, 642, 812, 952, 988
HincII	GTYRAC	1 cut(s)	1019
HindII	GTYRAC	1 cut(s)	1019
HinfI	GANTC	1 cut(s)	860
HpaII	CCGG	2 cut(s)	805, 855
HphI	GGTGA	3 cut(s)	376, 418, 518
Hpy166II	GTNNAC	2 cut(s)	658, 1019
Hpy188I	TCNGA	4 cut(s)	47, 85, 108, 1028
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	2 cut(s)	658, 1019
HpyAV	CCTTC	2 cut(s)	466, 478
HpyCH4V	TGCA	5 cut(s)	11, 150, 174, 492, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	475
HpyF3I	CTNAG	5 cut(s)	27, 181, 297, 335, 513
Hsp92II	CATG	9 cut(s)	79, 95, 275, 307, 410, 642, 812, 952, 988
KroI	GCCGGC	1 cut(s)	804
KroNI	GCCGGC	1 cut(s)	806
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	85, 268, 331, 544, 997
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	2 cut(s)	186, 965
LweI	GCATC	6 cut(s)	206, 403, 499, 606, 690, 860
MaeI	CTAG	2 cut(s)	189, 207
MaeIII	GTNAC	3 cut(s)	424, 832, 895
MalI	GATC	5 cut(s)	87, 270, 333, 546, 999
MboI	GATC	5 cut(s)	85, 268, 331, 544, 997
MboII	GAAGA	4 cut(s)	80, 121, 731, 899
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	168, 480
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	6 cut(s)	101, 135, 258, 645, 774, 1002
MluNI	TGGCCA	1 cut(s)	580
MmeI	TCCRAC	1 cut(s)	787
Mox20I	TGGCCA	1 cut(s)	580
MroNI	GCCGGC	1 cut(s)	804
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	5 cut(s)	402, 620, 644, 753, 843
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	805, 855
MspR9I	CCNGG	2 cut(s)	285, 856
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	475
NaeI	GCCGGC	1 cut(s)	806
NciI	CCSGG	1 cut(s)	856
NdeII	GATC	5 cut(s)	85, 268, 331, 544, 997
NgoMIV	GCCGGC	1 cut(s)	804
NlaIII	CATG	9 cut(s)	79, 95, 275, 307, 410, 642, 812, 952, 988
NlaIV	GGNNCC	4 cut(s)	251, 477, 737, 975
NmuCI	GTSAC	2 cut(s)	424, 895
NspI	RCATGY	3 cut(s)	410, 642, 988
NspV	TTCGAA	1 cut(s)	529
PaeI	GCATGC	1 cut(s)	642
PasI	CCCWGGG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	984
PdiI	GCCGGC	1 cut(s)	806
PfeI	GAWTC	1 cut(s)	860
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	176, 955
PpuMI	RGGWCCY	1 cut(s)	517
PscI	ACATGT	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	251, 477, 737, 975
PspPI	GGNCC	4 cut(s)	517, 650, 779, 878
PspPPI	RGGWCCY	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	6 cut(s)	130, 376, 575, 659, 725, 1008
RsaNI	GTAC	6 cut(s)	129, 375, 574, 658, 724, 1007
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	402, 620, 644, 753, 843
SatI	GCNGC	2 cut(s)	175, 954
Sau3AI	GATC	5 cut(s)	85, 268, 331, 544, 997
Sau96I	GGNCC	4 cut(s)	517, 650, 779, 878
ScaI	AGTACT	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	285, 856
SduI	GDGCHC	2 cut(s)	168, 480
SfaNI	GCATC	6 cut(s)	206, 403, 499, 606, 690, 860
SfcI	CTRYAG	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	529
SinI	GGWCC	3 cut(s)	517, 650, 878
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	6 cut(s)	101, 135, 258, 645, 774, 1002
SsiI	CCGC	1 cut(s)	931
SspMI	CTAG	2 cut(s)	189, 207
StyD4I	CCNGG	2 cut(s)	283, 854
StyI	CCWWGG	2 cut(s)	206, 459
TaqI	TCGA	2 cut(s)	529, 547
TasI	AATT	6 cut(s)	101, 135, 258, 645, 774, 1002
TatI	WGTACW	3 cut(s)	128, 573, 723
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	5 cut(s)	402, 620, 644, 753, 843
Tru9I	TTAA	5 cut(s)	402, 620, 644, 753, 843
TseFI	GTSAC	2 cut(s)	424, 895
TseI	GCWGC	2 cut(s)	174, 953
Tsp45I	GTSAC	2 cut(s)	424, 895
TspDTI	ATGAA	4 cut(s)	64, 80, 202, 925
TspGWI	ACGGA	1 cut(s)	903
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	3 cut(s)	517, 650, 878
XapI	RAATTY	1 cut(s)	135
XceI	RCATGY	3 cut(s)	410, 642, 988
XmaJI	CCTAGG	1 cut(s)	206
XspI	CTAG	2 cut(s)	189, 207
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.