Rw6G027460
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ MBSQ MT family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
51294314 .. 51296926
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G027460.1

Sequence Viewer

Length: 1029 bp
ATGGCCTCTGCGATGCTCAACGGGGCCCAGCATCTCACACTCCGGCGAGGTTTATCCCCAAATGGGTTGGGTTTTGTTGGGTCGGATTTTCATGGGAAGCAGTTTCTGAAGATGGGTTTGGTTTCAAACACTAGAATTTCCAAGTCTGGTGCCAGAGCCATTGTGCCCAAGTGTAGTGTCTCAGCTTCCAGGCCTGCTTCTCAGCCCAGGTTCATTCAGCACAAGAAAGAGGCTTTCTGGTTTTATAGGTTTCTGTCAATTGTTTATGACCATGTCATAAACCCTGGGCACTGGACAGAGGACATGAGGGACGATGCACTTGAGCCAGCTGATCTTAACGACAGGAGAATGATTGTCGTAGATGTGGGTGGAGGTACTGGGTTCACCACCTTGGGGATAGTTAAGCATGTGGATGCCAAGAATGTGACCATTCTTGATCAGTCCCCTCATCAGCTAGCTAGGGCTAAGAAGAAGGAGCCTTTGAAGGAGTGCAAGATCATTGAAGGTGATGCTGAGGACTTGCCTTTTCGGACTGATTATGCTGATCGATATGTATCTGCAGGAAGTATTGAGTACTGGCCAGACCCACAGCGTGGCATCAAGGAAGCATACAGGGTCTTGAAACTTGGAGGAAAAGCATGCTTGATTGGTCCTGTGTACCCAACGTTTTGGTTGTCTCGCTTCTTTGCTGATGTATGGATGCTTTTCCCCAAGGAGGAAGAGTACATTGAATGGTTCGAGAAGGCTGGATTCAAAGATGTCCAACTGAAAAGAATTGGCCCAAAATGGTACCGTGGGGTTCGCCGCCATGGATTGATAATGGGGTGTTCTGTAACAGGCGTTAAGCCTGCATCTGGGGATTCTCCTTTACAACTCGGACCAAAAGCAGAGGATGTGTCAGAGCCTGTAAAGCCACTATCGTTCCTTACGCGCTTCATCTTGGGTGCCTTGGCAGGAATGTACTACGTACTGGTGCCTATATACATGTGGCTCAAAGATCAAATTGTACCAAAAGGTCAACCAATCTAA

Protein Analysis

342

Amino Acids

38.43

Weight (kDa)

9.37

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_31 PF13847 114 - 217 6.7e-11 Methyltransferase domain
Ubie_methyltran PF01209 117 - 216 8e-12 ubiE/COQ5 methyltransferase family
Methyltransf_25 PF13649 119 - 211 9.3e-17 Methyltransferase domain
Methyltransf_11 PF08241 120 - 214 2.5e-19 Methyltransferase domain
Methyltransf_12 PF08242 120 - 212 7.5e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 789
AccB1I GGYRCC 4 cut(s) 149, 789, 944, 973
AccB7I CCANNNNNTGG 1 cut(s) 593
AccII CGCG 1 cut(s) 931
AciI CCGC 1 cut(s) 805
AclI AACGTT 1 cut(s) 665
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 8 cut(s) 376, 575, 659, 725, 791, 962, 969, 1008
AfiI CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
AflIII ACRYGT 1 cut(s) 984
AgsI TTSAA 6 cut(s) 126, 484, 503, 622, 731, 754
AjnI CCWGG 3 cut(s) 188, 206, 283
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 4 cut(s) 185, 329, 454, 458
AluI AGCT 4 cut(s) 185, 329, 454, 458
Alw26I GTCTC 2 cut(s) 184, 681
AlwNI CAGNNNCTG 2 cut(s) 106, 905
AoxI GGCC 5 cut(s) 3, 24, 191, 578, 778
ApaI GGGCCC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 5 cut(s) 24, 25, 650, 779, 878
AsuHPI GGTGA 2 cut(s) 376, 518
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 2 cut(s) 650, 878
BaeGI GKGCMC 3 cut(s) 28, 168, 291
BalI TGGCCA 1 cut(s) 580
BanI GGYRCC 4 cut(s) 149, 789, 944, 973
BanII GRGCYC 1 cut(s) 28
BbvCI CCTCAGC 1 cut(s) 513
BccI CCATC 1 cut(s) 106
BciT130I CCWGG 3 cut(s) 190, 208, 285
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 2 cut(s) 184, 681
BfaI CTAG 3 cut(s) 132, 455, 459
BfmI CTRYAG 1 cut(s) 558
BisI GCNGC 1 cut(s) 805
BlsI GCNGC 1 cut(s) 806
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 3 cut(s) 190, 208, 285
Bme18I GGWCC 2 cut(s) 650, 878
BmgT120I GGNCC 5 cut(s) 24, 25, 650, 779, 878
BmiI GGNNCC 7 cut(s) 25, 26, 151, 477, 791, 946, 975
BmrFI CCNGG 3 cut(s) 190, 208, 285
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 8 cut(s) 3, 40, 304, 403, 499, 606, 690, 860
BmtI GCTAGC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 547
BsaAI YACGTR 1 cut(s) 967
BsaBI GATNNNNATC 1 cut(s) 553
BsaJI CCNNGG 8 cut(s) 206, 283, 284, 390, 711, 793, 808, 948
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
Bse1I ACTGG 4 cut(s) 296, 382, 581, 975
Bse8I GATNNNNATC 1 cut(s) 553
BseBI CCWGG 3 cut(s) 190, 208, 285
BseCI ATCGAT 1 cut(s) 547
BseDI CCNNGG 8 cut(s) 206, 283, 284, 390, 711, 793, 808, 948
BseGI GGATG 3 cut(s) 418, 705, 898
BseJI GATNNNNATC 1 cut(s) 553
BseLI CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
BseMII CTCAG 3 cut(s) 195, 215, 504
BseNI ACTGG 4 cut(s) 296, 382, 581, 975
BseSI GKGCMC 3 cut(s) 28, 168, 291
BseYI CCCAGC 1 cut(s) 27
Bsh1236I CGCG 1 cut(s) 931
BshFI GGCC 5 cut(s) 5, 26, 193, 580, 780
BshNI GGYRCC 4 cut(s) 149, 789, 944, 973
BshVI ATCGAT 1 cut(s) 547
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 323, 427
BslI CCNNNNNNNGG 5 cut(s) 63, 393, 593, 715, 854
BsmAI GTCTC 2 cut(s) 184, 681
BsmFI GGGAC 2 cut(s) 323, 427
BsnI GGCC 5 cut(s) 5, 26, 193, 580, 780
Bsp120I GGGCCC 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 28, 168, 291
Bsp143I GATC 5 cut(s) 331, 436, 495, 544, 997
Bsp19I CCATGG 1 cut(s) 808
BspACI CCGC 1 cut(s) 805
BspANI GGCC 5 cut(s) 5, 26, 193, 580, 780
BspCNI CTCAG 3 cut(s) 194, 214, 505
BspDI ATCGAT 1 cut(s) 547
BspFNI CGCG 1 cut(s) 931
BspLI GGNNCC 7 cut(s) 25, 26, 151, 477, 791, 946, 975
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 458
BspT107I GGYRCC 4 cut(s) 149, 789, 944, 973
BsrI ACTGG 4 cut(s) 296, 382, 581, 975
BssECI CCNNGG 8 cut(s) 206, 283, 284, 390, 711, 793, 808, 948
BssMI GATC 5 cut(s) 331, 436, 495, 544, 997
BssT1I CCWWGG 4 cut(s) 390, 711, 808, 948
Bst2UI CCWGG 3 cut(s) 190, 208, 285
Bst4CI ACNGT 1 cut(s) 794
Bst6I CTCTTC 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 967
BstC8I GCNNGC 5 cut(s) 195, 327, 456, 640, 849
BstDEI CTNAG 4 cut(s) 181, 201, 465, 513
BstDSI CCRYGG 2 cut(s) 793, 808
BstF5I GGATG 3 cut(s) 418, 705, 898
BstFNI CGCG 1 cut(s) 931
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 5 cut(s) 334, 439, 498, 547, 1000
BstMAI GTCTC 2 cut(s) 184, 681
BstMBI GATC 5 cut(s) 331, 436, 495, 544, 997
BstMWI GCNNNNNNNGC 1 cut(s) 910
BstNI CCWGG 3 cut(s) 190, 208, 285
BstNSI RCATGY 3 cut(s) 410, 642, 988
BstSCI CCNGG 3 cut(s) 188, 206, 283
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 3 cut(s) 28, 168, 291
BstSNI TACGTA 1 cut(s) 967
BstUI CGCG 1 cut(s) 931
BstXI CCANNNNNNTGG 1 cut(s) 669
Bsu15I ATCGAT 1 cut(s) 547
BsuRI GGCC 5 cut(s) 5, 26, 193, 580, 780
BsuTUI ATCGAT 1 cut(s) 547
BtgI CCRYGG 2 cut(s) 793, 808
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 3 cut(s) 418, 705, 898
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 5 cut(s) 195, 327, 456, 640, 849
CaiI CAGNNNCTG 2 cut(s) 106, 905
CfoI GCGC 1 cut(s) 933
Cfr13I GGNCC 5 cut(s) 24, 25, 650, 779, 878
ClaI ATCGAT 1 cut(s) 547
Csp6I GTAC 8 cut(s) 375, 574, 658, 724, 790, 961, 968, 1007
CviAII CATG 7 cut(s) 92, 272, 304, 407, 639, 809, 985
CviQI GTAC 8 cut(s) 375, 574, 658, 724, 790, 961, 968, 1007
DdeI CTNAG 4 cut(s) 181, 201, 465, 513
DpnI GATC 5 cut(s) 333, 438, 497, 546, 999
DpnII GATC 5 cut(s) 331, 436, 495, 544, 997
DraIII CACNNNGTG 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco105I TACGTA 1 cut(s) 967
Eco130I CCWWGG 4 cut(s) 390, 711, 808, 948
Eco147I AGGCCT 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 2 cut(s) 650, 878
Eco57I CTGAAG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 188, 206, 283
EcoT14I CCWWGG 4 cut(s) 390, 711, 808, 948
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 4 cut(s) 390, 711, 808, 948
FaeI CATG 7 cut(s) 95, 275, 307, 410, 642, 812, 988
FaqI GGGAC 2 cut(s) 323, 427
FatI CATG 7 cut(s) 91, 271, 303, 406, 638, 808, 984
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 3 cut(s) 425, 712, 905
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 3 cut(s) 132, 455, 459
GlaI GCGC 1 cut(s) 932
GluI GCNGC 1 cut(s) 805
GsaI CCCAGC 1 cut(s) 31
HaeIII GGCC 5 cut(s) 5, 26, 193, 580, 780
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 933
Hin1II CATG 7 cut(s) 95, 275, 307, 410, 642, 812, 988
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 1 cut(s) 1019
HindII GTYRAC 1 cut(s) 1019
HinfI GANTC 2 cut(s) 750, 860
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 376, 518
Hpy166II GTNNAC 3 cut(s) 384, 658, 1019
Hpy188I TCNGA 5 cut(s) 85, 108, 531, 878, 901
Hpy188III TCNNGA 3 cut(s) 434, 619, 739
Hpy8I GTNNAC 3 cut(s) 384, 658, 1019
HpyAV CCTTC 4 cut(s) 466, 478, 497, 736
HpyCH4III ACNGT 1 cut(s) 794
HpyCH4IV ACGT 2 cut(s) 665, 966
HpyCH4V TGCA 4 cut(s) 317, 492, 560, 851
HpyF10VI GCNNNNNNNGC 1 cut(s) 910
HpyF3I CTNAG 4 cut(s) 181, 201, 465, 513
HpySE526I ACGT 2 cut(s) 665, 966
Hsp92II CATG 7 cut(s) 95, 275, 307, 410, 642, 812, 988
HspAI GCGC 1 cut(s) 931
KpnI GGTACC 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 5 cut(s) 331, 436, 495, 544, 997
LmnI GCTCC 1 cut(s) 475
LweI GCATC 8 cut(s) 3, 40, 304, 403, 499, 606, 690, 860
MaeI CTAG 3 cut(s) 132, 455, 459
MaeII ACGT 2 cut(s) 665, 966
MaeIII GTNAC 2 cut(s) 424, 832
MalI GATC 5 cut(s) 333, 438, 497, 546, 999
MboI GATC 5 cut(s) 331, 436, 495, 544, 997
MboII GAAGA 3 cut(s) 121, 481, 731
MfeI CAATTG 1 cut(s) 258
MhlI GDGCHC 3 cut(s) 28, 168, 291
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 4 cut(s) 135, 258, 774, 1002
MluNI TGGCCA 1 cut(s) 580
MmeI TCCRAC 2 cut(s) 63, 787
Mox20I TGGCCA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 580
MseI TTAA 3 cut(s) 336, 402, 843
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 3 cut(s) 190, 208, 285
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 3 cut(s) 190, 208, 285
MvnI CGCG 1 cut(s) 931
MwoI GCNNNNNNNGC 1 cut(s) 910
NcoI CCATGG 1 cut(s) 808
NdeII GATC 5 cut(s) 331, 436, 495, 544, 997
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 7 cut(s) 95, 275, 307, 410, 642, 812, 988
NlaIV GGNNCC 7 cut(s) 25, 26, 151, 477, 791, 946, 975
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 3 cut(s) 410, 642, 988
PaeI GCATGC 1 cut(s) 642
PasI CCCWGGG 1 cut(s) 284
PceI AGGCCT 1 cut(s) 193
PciI ACATGT 1 cut(s) 984
PfeI GAWTC 2 cut(s) 750, 860
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 1 cut(s) 806
Ppu21I YACGTR 1 cut(s) 967
PscI ACATGT 1 cut(s) 984
Psp1406I AACGTT 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 188, 206, 283
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 3 cut(s) 188, 206, 283
PspN4I GGNNCC 7 cut(s) 25, 26, 151, 477, 791, 946, 975
PspOMI GGGCCC 1 cut(s) 24
PspPI GGNCC 5 cut(s) 24, 25, 650, 779, 878
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 2 cut(s) 106, 905
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 8 cut(s) 376, 575, 659, 725, 791, 962, 969, 1008
RsaNI GTAC 8 cut(s) 375, 574, 658, 724, 790, 961, 968, 1007
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 3 cut(s) 336, 402, 843
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 5 cut(s) 331, 436, 495, 544, 997
Sau96I GGNCC 5 cut(s) 24, 25, 650, 779, 878
ScaI AGTACT 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 190, 208, 285
SduI GDGCHC 3 cut(s) 28, 168, 291
SfaNI GCATC 8 cut(s) 3, 40, 304, 403, 499, 606, 690, 860
SfcI CTRYAG 1 cut(s) 558
SinI GGWCC 2 cut(s) 650, 878
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SnaBI TACGTA 1 cut(s) 967
SphI GCATGC 1 cut(s) 642
Sse9I AATT 4 cut(s) 135, 258, 774, 1002
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 1 cut(s) 805
SspMI CTAG 3 cut(s) 132, 455, 459
StuI AGGCCT 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 188, 206, 283
StyI CCWWGG 4 cut(s) 390, 711, 808, 948
TaaI ACNGT 1 cut(s) 794
TaiI ACGT 2 cut(s) 668, 969
TaqI TCGA 2 cut(s) 547, 738
TasI AATT 4 cut(s) 135, 258, 774, 1002
TatI WGTACW 3 cut(s) 573, 723, 960
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 2 cut(s) 750, 860
Tru1I TTAA 3 cut(s) 336, 402, 843
Tru9I TTAA 3 cut(s) 336, 402, 843
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 3 cut(s) 80, 202, 925
TspRI CASTG 1 cut(s) 296
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 650, 878
XapI RAATTY 1 cut(s) 135
XceI RCATGY 3 cut(s) 410, 642, 988
XspI CTAG 3 cut(s) 132, 455, 459
ZrmI AGTACT 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.