FvH4_2g37880

Tyrosine kinase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001013
Physical Location & Seq
Reverse (-)
27492744 .. 27498375
5632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37880.t9

Sequence Viewer

Length: 1671 bp
ATGGCGGAGGAGGACACGGAGAGTCGGTGTAGCATACCCGCGGGGTTTTCGCCGGCTTTGACCAAGAAGCAAAAGCTGAAAGTGAATATCTACAATGAAGTTCTGGTTCGGCTTAAAGACTCGGATGTTTCGGAGGCCCGACAACCCGGTTTCGAAGATGAACTCTGGTCTCATTTCAATCGCCTCCCAACTAGATATGCTTTGGATGTGAATGTGGAGAGGGCACAAGATGTTCTCATGCATAAAAGACTATTACATATGGCACATGACCCGGCCACTAGACCCGCAGTAGAAGTCCGTCTTGTGCAGGTTCATTCTTCTTCTGGTTCAAACTCATCCAGAAAGGCAGATGCTCAGTGTTCTGGTTCTGCTGGCAAACAGAGTCATCCACCACCAGCATTTGGTTTGTCGGAAGACCTTGAACTTGCTCTTGAAGCCAAGAAGTTACAAGTTCAACATGGGAATAACACTGTTCCAAGGCCGATTTATGAAATTACAATCTCAACTAGTGACAAGCCCAAACTCCTCAGTGAGCTGACATCCTTATTATCTGACATCGGACTAAACATTCAAGAAGCACACGCTTTTTCTACAACAGATGGCTACTCCTTGGATGTCTTTGTCGTTGATGGTTGGGAATGTGAGGAAACTGAACGGCTTAGACAGACATTGGTAAACGTAATACTATGGAGTGAGAAGAATCCTTGCTTGGATCACAATGTTATGCCCCCTGTTCTGGGGCCAGACGGTGGAATGAAGGTCACTGGTGATCATGTCAGCACATCCAGTGAAGGAAAAGATATCTGGGAAATTGATTCCAGCCTATTGACATATGAAAAGAAAATTGCTTCTGGATCAAATGGTGATTTATATCAAGGTACTTTCTGTGGTCAAGATGTGGCCATCAAAGTTCTTAGCACTGACCGCCTAAATGAAACTATGAAGGAGTTTGCGCAAGAAGTCTCTATATTGAGAAAAGTTCGGCACAAGAATGTTGTTCAATTCATAGGGGCATGCACTAAACCTCCTAACCTCTGCATAATTACTGAATTTTTGTCTGGGGGTAGCATGTATGACTTTCTGCGTAACCAAAAGGGTGCTTTTTCACTTCAGTCCTTGCTCAAAGTTGCAGTTGATGTTTCCAGGGGAATGAAATACTTGCACCAAAATAATATAATCCACAGGGACTTGAAAGCTGCTAATCTTTTGATGGATGGAAATGGAGTTGTCAAAGTAGCTGATTTTGGGATTGCTAGAGTACAGGCACAATCCGGTGTCATGACTGCAGAAACTGGCACTTACCGTTGGATGGCTCCAGAGGTTATAGAACATAAACCTTATGATAACAAAGCCGATGTTTTTAGCTTTGGGATTGTTCTGTGGGAGCTTCTTACAGGAAAGCTTCCCTATGAGAACTTAACACCACTACAAGCAGCACTTGGTGTCGTCAAGAAGGGTCTGAGGCCTCCGATTCCAAAGCACACTAACCCCATGTTAGTTGAGTTAATGGAGAGTTGCTGGCAGCATGACTCATCCTTGAGACCTGAGTTCTCAGACATTGTAAATATGTTGCGACAGATGACTAGGAGGGTTGCGGATGAAAGGGAGGATCGGAGAAAGGGAAAATCAGCCAAAGTAGTACCCACTCTCAGGCATGGCAGTGCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel Pkinase_Tyr

Protein Analysis

557

Amino Acids

61.88

Weight (kDa)

6.4

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 277 - 349 2.6e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 278 - 348 2.3e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 348 - 381 3.5e-07 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 350 - 380 6.5e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 298
AccB7I CCANNNNNTGG 2 cut(s) 401, 749
AccII CGCG 1 cut(s) 41
AciI CCGC 6 cut(s) 5, 39, 41, 285, 925, 1595
AclWI GGATC 3 cut(s) 720, 862, 1617
AcoI YGGCCR 2 cut(s) 273, 900
AcsI RAATTY 1 cut(s) 1049
AcuI CTGAAG 1 cut(s) 1094
AdeI CACNNNGTG 1 cut(s) 1442
AfaI GTAC 3 cut(s) 880, 1260, 1641
AfiI CCNNNNNNNGG 6 cut(s) 401, 736, 737, 749, 1309, 1650
AgsI TTSAA 8 cut(s) 178, 330, 422, 434, 455, 572, 1001, 1192
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 7 cut(s) 76, 535, 1196, 1238, 1365, 1387, 1402
AluI AGCT 7 cut(s) 76, 535, 1196, 1238, 1365, 1387, 1402
Alw26I GTCTC 3 cut(s) 174, 967, 1534
AlwI GGATC 3 cut(s) 720, 862, 1617
AlwNI CAGNNNCTG 1 cut(s) 1292
AoxI GGCC 6 cut(s) 135, 273, 479, 740, 900, 1463
ApeKI GCWGC 3 cut(s) 1196, 1433, 1522
ApoI RAATTY 1 cut(s) 1049
AspLEI GCGC 1 cut(s) 955
AspS9I GGNCC 2 cut(s) 136, 740
AsuC2I CCSGG 2 cut(s) 147, 272
AsuHPI GGTGA 2 cut(s) 779, 875
AsuII TTCGAA 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 902
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 1183, 1445, 1534
BccI CCATC 6 cut(s) 593, 623, 911, 1204, 1208, 1303
BceAI ACGGC 1 cut(s) 671
BciT130I CCWGG 1 cut(s) 1144
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 2 cut(s) 147, 272
BcoDI GTCTC 3 cut(s) 174, 967, 1534
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 5 cut(s) 192, 279, 507, 1254, 1584
BfmI CTRYAG 1 cut(s) 1284
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 3 cut(s) 1197, 1434, 1523
BlsI GCNGC 3 cut(s) 1198, 1435, 1524
Bme1390I CCNGG 3 cut(s) 147, 272, 1144
BmgT120I GGNCC 2 cut(s) 136, 740
BmiI GGNNCC 2 cut(s) 741, 1314
BmrFI CCNGG 3 cut(s) 147, 272, 1144
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 1299
Bpu14I TTCGAA 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 1558
BpuMI CCSGG 2 cut(s) 147, 272
BsaBI GATNNNNATC 1 cut(s) 870
BsaI GGTCTC 2 cut(s) 174, 1534
BsaJI CCNNGG 4 cut(s) 39, 476, 609, 1143
BsaWI WCCGGW 1 cut(s) 1271
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 1009, 1039
Bsc4I CCNNNNNNNGG 6 cut(s) 401, 736, 737, 749, 1309, 1650
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 769, 786, 1297
Bse8I GATNNNNATC 1 cut(s) 870
BseBI CCWGG 1 cut(s) 1144
BseDI CCNNGG 4 cut(s) 39, 476, 609, 1143
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 6 cut(s) 401, 736, 737, 749, 1309, 1650
BseMII CTCAG 6 cut(s) 368, 541, 1451, 1536, 1566, 1663
BseNI ACTGG 3 cut(s) 769, 786, 1297
BseRI GAGGAG 2 cut(s) 23, 515
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 3 cut(s) 1183, 1445, 1534
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 6 cut(s) 137, 275, 481, 742, 902, 1465
BsiSI CCGG 4 cut(s) 53, 147, 272, 1272
BslFI GGGAC 1 cut(s) 1199
BslI CCNNNNNNNGG 6 cut(s) 401, 736, 737, 749, 1309, 1650
BsmAI GTCTC 3 cut(s) 174, 967, 1534
BsmFI GGGAC 1 cut(s) 1199
BsnI GGCC 6 cut(s) 137, 275, 481, 742, 902, 1465
Bso31I GGTCTC 2 cut(s) 174, 1534
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 4 cut(s) 712, 769, 854, 1609
BspACI CCGC 6 cut(s) 5, 39, 41, 285, 925, 1595
BspANI GGCC 6 cut(s) 137, 275, 481, 742, 902, 1465
BspCNI CTCAG 6 cut(s) 367, 540, 1452, 1537, 1565, 1662
BspFNI CGCG 1 cut(s) 41
BspHI TCATGA 1 cut(s) 1278
BspLI GGNNCC 2 cut(s) 741, 1314
BspMAI CTGCAG 1 cut(s) 1288
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 3 cut(s) 720, 862, 1617
BspT104I TTCGAA 1 cut(s) 153
BspTNI GGTCTC 2 cut(s) 174, 1534
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 3 cut(s) 769, 786, 1297
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 4 cut(s) 39, 476, 609, 1143
BssMI GATC 4 cut(s) 712, 769, 854, 1609
BssT1I CCWWGG 2 cut(s) 476, 609
Bst2UI CCWGG 1 cut(s) 1144
Bst4CI ACNGT 3 cut(s) 472, 749, 1304
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 54, 373, 1015, 1520
BstDEI CTNAG 8 cut(s) 354, 527, 659, 914, 1460, 1545, 1552, 1649
BstDSI CCRYGG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 955
BstKTI GATC 4 cut(s) 715, 772, 857, 1612
BstMAI GTCTC 3 cut(s) 174, 967, 1534
BstMBI GATC 4 cut(s) 712, 769, 854, 1609
BstMWI GCNNNNNNNGC 2 cut(s) 434, 924
BstNI CCWGG 1 cut(s) 1144
BstNSI RCATGY 2 cut(s) 1017, 1072
BstSCI CCNGG 3 cut(s) 145, 270, 1142
BstSFI CTRYAG 1 cut(s) 1284
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 1183, 1445, 1534
BstV2I GAAGAC 1 cut(s) 420
BsuRI GGCC 6 cut(s) 137, 275, 481, 742, 902, 1465
BtgI CCRYGG 1 cut(s) 39
BtsI GCAGTG 1 cut(s) 1666
BtsIMutI CAGTG 7 cut(s) 362, 468, 535, 762, 793, 918, 1666
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 54, 373, 1015, 1520
CaiI CAGNNNCTG 1 cut(s) 1292
CciI TCATGA 1 cut(s) 1278
CfoI GCGC 1 cut(s) 955
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 136, 740
Cfr42I CCGCGG 1 cut(s) 42
Csp6I GTAC 3 cut(s) 879, 1259, 1640
CviQI GTAC 3 cut(s) 879, 1259, 1640
DdeI CTNAG 8 cut(s) 354, 527, 659, 914, 1460, 1545, 1552, 1649
DpnI GATC 4 cut(s) 714, 771, 856, 1611
DpnII GATC 4 cut(s) 712, 769, 854, 1609
DraIII CACNNNGTG 1 cut(s) 1442
EaeI YGGCCR 2 cut(s) 273, 900
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 476, 609
Eco147I AGGCCT 1 cut(s) 1465
Eco31I GGTCTC 2 cut(s) 174, 1534
Eco32I GATATC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 1094
EcoRII CCWGG 1 cut(s) 1142
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 2 cut(s) 476, 609
EcoT22I ATGCAT 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 476, 609
FalI AAGNNNNNCTT 4 cut(s) 285, 317, 1422, 1454
FaqI GGGAC 1 cut(s) 1199
FauI CCCGC 3 cut(s) 34, 46, 292
FauNDI CATATG 2 cut(s) 258, 832
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 3 cut(s) 1197, 1434, 1523
Fsp4HI GCNGC 3 cut(s) 1197, 1434, 1523
FspBI CTAG 5 cut(s) 192, 279, 507, 1254, 1584
FspI TGCGCA 1 cut(s) 954
GlaI GCGC 1 cut(s) 954
GluI GCNGC 3 cut(s) 1197, 1434, 1523
GsuI CTGGAG 1 cut(s) 1299
HaeIII GGCC 6 cut(s) 137, 275, 481, 742, 902, 1465
HapII CCGG 4 cut(s) 53, 147, 272, 1272
HhaI GCGC 1 cut(s) 955
Hin6I GCGC 1 cut(s) 953
HinP1I GCGC 1 cut(s) 953
HindIII AAGCTT 1 cut(s) 1400
HinfI GANTC 7 cut(s) 22, 119, 382, 700, 815, 1471, 1529
HpaII CCGG 4 cut(s) 53, 147, 272, 1272
HphI GGTGA 2 cut(s) 779, 875
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 9 cut(s) 124, 133, 412, 553, 560, 1461, 1470, 1555, 1614
Hpy188III TCNNGA 8 cut(s) 339, 431, 572, 852, 893, 1279, 1316, 1450
Hpy8I GTNNAC 1 cut(s) 676
HpyAV CCTTC 4 cut(s) 751, 785, 937, 1447
HpyCH4III ACNGT 3 cut(s) 472, 749, 1304
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 7 cut(s) 241, 307, 1017, 1038, 1130, 1162, 1286
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 924
HpyF3I CTNAG 8 cut(s) 354, 527, 659, 914, 1460, 1545, 1552, 1649
HpySE526I ACGT 1 cut(s) 678
HspAI GCGC 1 cut(s) 953
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 769
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 4 cut(s) 712, 769, 854, 1609
LmnI GCTCC 2 cut(s) 1318, 1384
Lsp1109I GCAGC 3 cut(s) 1183, 1445, 1534
LweI GCATC 1 cut(s) 340
MaeI CTAG 5 cut(s) 192, 279, 507, 1254, 1584
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 4 cut(s) 444, 509, 760, 1085
MalI GATC 4 cut(s) 714, 771, 856, 1611
MboI GATC 4 cut(s) 712, 769, 854, 1609
MboII GAAGA 5 cut(s) 167, 309, 312, 425, 709
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 902
MluCI AATT 6 cut(s) 492, 810, 843, 1001, 1041, 1049
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 4 cut(s) 31, 113, 391, 1523
MmeI TCCRAC 2 cut(s) 390, 1286
Mox20I TGGCCA 1 cut(s) 902
Mph1103I ATGCAT 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 902
MseI TTAA 3 cut(s) 114, 1418, 1505
MslI CAYNNNNRTG 2 cut(s) 990, 1659
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 4 cut(s) 53, 147, 272, 1272
MspR9I CCNGG 3 cut(s) 147, 272, 1144
MvaI CCWGG 1 cut(s) 1144
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 434, 924
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 2 cut(s) 147, 272
NdeI CATATG 2 cut(s) 258, 832
NdeII GATC 4 cut(s) 712, 769, 854, 1609
NgoMIV GCCGGC 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 741, 1314
NmuCI GTSAC 2 cut(s) 509, 760
NsbI TGCGCA 1 cut(s) 954
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 2 cut(s) 1017, 1072
NspV TTCGAA 1 cut(s) 153
PaeI GCATGC 1 cut(s) 1017
PagI TCATGA 1 cut(s) 1278
PceI AGGCCT 1 cut(s) 1465
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 700, 815, 1471
PflMI CCANNNNNTGG 2 cut(s) 401, 749
PkrI GCNGC 3 cut(s) 1198, 1435, 1524
PleI GAGTC 4 cut(s) 30, 113, 390, 1523
PpsI GAGTC 4 cut(s) 30, 113, 390, 1523
Psp6I CCWGG 1 cut(s) 1142
PspGI CCWGG 1 cut(s) 1142
PspN4I GGNNCC 2 cut(s) 741, 1314
PspPI GGNCC 2 cut(s) 136, 740
PstI CTGCAG 1 cut(s) 1288
PstNI CAGNNNCTG 1 cut(s) 1292
RsaI GTAC 3 cut(s) 880, 1260, 1641
RsaNI GTAC 3 cut(s) 879, 1259, 1640
RseI CAYNNNNRTG 2 cut(s) 990, 1659
SacII CCGCGG 1 cut(s) 42
SaqAI TTAA 3 cut(s) 114, 1418, 1505
SatI GCNGC 3 cut(s) 1197, 1434, 1523
Sau3AI GATC 4 cut(s) 712, 769, 854, 1609
Sau96I GGNCC 2 cut(s) 136, 740
SchI GAGTC 4 cut(s) 31, 113, 391, 1523
ScrFI CCNGG 3 cut(s) 147, 272, 1144
SduI GDGCHC 1 cut(s) 226
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 1284
Sfr303I CCGCGG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 153
SgrBI CCGCGG 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 990, 1659
SmlI CTYRAG 1 cut(s) 1537
SmoI CTYRAG 1 cut(s) 1537
SpeI ACTAGT 1 cut(s) 506
SphI GCATGC 1 cut(s) 1017
Sse9I AATT 6 cut(s) 492, 810, 843, 1001, 1041, 1049
SseBI AGGCCT 1 cut(s) 1465
SsiI CCGC 6 cut(s) 5, 39, 41, 285, 925, 1595
SspMI CTAG 5 cut(s) 192, 279, 507, 1254, 1584
StuI AGGCCT 1 cut(s) 1465
StyD4I CCNGG 3 cut(s) 145, 270, 1142
StyI CCWWGG 2 cut(s) 476, 609
TaaI ACNGT 3 cut(s) 472, 749, 1304
TaiI ACGT 1 cut(s) 681
TaqI TCGA 1 cut(s) 153
TasI AATT 6 cut(s) 492, 810, 843, 1001, 1041, 1049
TatI WGTACW 1 cut(s) 1258
TfiI GAWTC 3 cut(s) 700, 815, 1471
Tru1I TTAA 3 cut(s) 114, 1418, 1505
Tru9I TTAA 3 cut(s) 114, 1418, 1505
TscAI CASTG 7 cut(s) 362, 475, 535, 769, 793, 925, 1666
TseFI GTSAC 2 cut(s) 509, 760
TseI GCWGC 3 cut(s) 1196, 1433, 1522
Tsp45I GTSAC 2 cut(s) 509, 760
TspGWI ACGGA 2 cut(s) 32, 287
TspRI CASTG 7 cut(s) 362, 475, 535, 769, 793, 925, 1666
Van91I CCANNNNNTGG 2 cut(s) 401, 749
XapI RAATTY 1 cut(s) 1049
XceI RCATGY 2 cut(s) 1017, 1072
XspI CTAG 5 cut(s) 192, 279, 507, 1254, 1584
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.