Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Reverse (-)

40384265 .. 40390658

Gene Structure 6394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG238400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGGTGCGCACTAAGCCGTTAAACTTTCTGCGAAATCCAGACACTCTCTCATCATATAAAAAAATCCCATTTTATCTCGGTCGTCATTTTTTATTTCCCCAAATCCTTCCTTATATAATTCTCTGTCAGTTTGAACCCTCTCTCTCTCTCTCTCAAATCCGCGGCTATATAAACCCAGACCTCCCTCCGTCGTTTCACGTAAAAACGATCTCTCTCGCATTCTCTGCTTTCTACTCGCTTCAATTTCCGGCGTCCGTCTCAATGGTGATGGACGACAACGAGAGCTGCGGGAGTAGAGCAGTGCACGACACGTCGTCTCCGGCTCAGTCCCACTCCCGGCAACAGCGCCAGAAGCTTCAGGTCTACAATGAGGTTCTTCGCCGCCTCAAGGATTCTCAAAACGACGAGGCTATTCTCCCTGGCTTCGACGATGAGCTTTGGGCTCACTTCAATCGCCTTCCCACTCGGTATGCGTTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTTATGCATAAAAGGTTGCTGCATTTGGCTCATGATCCTGCTCAAAGACCAGCCATCGAAATCCGGCTCGTACAGGTTCATCCAACTTCAAATGGAAATTCAGCTGGTTCTGTCAATTCATATTCTCTGGGTAAAGATGCTGCCCAAAGTTCAAAGTTATCTAGCAGACAAAGTATACATCCACCTCCGGCATTTGGCTCATCGCCCAACCTTGAAGCCCTTGCACTTGAATCAAATAAATCTCATGATCAAGATGATGAATATTCTGTACATGCCAACACACAGTTGAGTCGGCCCATGCATGAAATCACTTTCTCAACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCAGAGCTTGGGCTGAATATCCAAGAAGCACATGCATTTTCCACGCTGGATGGTTACTCCTTGGATGTCTTTGTTGTTGACGGCTGGCCTTACGAGGAAACGGAGCAGCTCAAGACTGCTTTGGAAAAGGAAGTTTTGAAGATTGAGGGACCATGGCCAATACATCGATCATCATCTTCTGGTAGTGAACATGATCAATTAGTGATCAAATCTGAACCTAATCACCTGATTATACCCAATGATGGGACTGATGTATGGGAAATTGATCCTAGACAGTTGAAATTTGGAAACAAAGTTGCATCTGGGTCCTGTGGTGATCTATACAAAGGTACTTACTGTAGTCAAGAAGTGGCGATTAAAGTCCTCAAACCTGAATGCGTAAATTCAGACATGCAAAAAGATTTTGCCCAGGAAGTCTTTATTATGAGGAAAGTTCGTCATAAGAATGTTGTACAATTCATTGGTGCATGTACCAAGCTCCCAAGCCTGTGTATTGTAACAGAATATATGTCTGGTGGAAGTGTGTATGACTACTTACATAAACAAAAGGGTGTTTTTAAGCTCCCATCCTTGCTCAAGGTAGCAATTGATGTTGCCAAGGGAATGACCTACTTGCACCAGAATAACATAATCCACAGGGATTTAAAAGCTGCCAATCTCTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTTGGGGTTGCCAGGGTCAAGTCTCAATCAGGAGTAATGACAGCAGAAACTGGGACATATAGGTGGATGGCTCCAGAGGTACGTACTGCCTGCCCTAGACTGGGGGGTGTGTGTGAGAGAGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

564

Amino Acids

63.23

Weight (kDa)

6.41

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	271 - 318	9.7e-07	ACT domain
PK_Tyr_Ser-Thr	PF07714	383 - 549	1.1e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	386 - 549	1.1e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AccI	GTMKAC	2 cut(s)	363, 682
AccII	CGCG	1 cut(s)	162
AciI	CCGC	4 cut(s)	160, 162, 288, 382
AclWI	GGATC	2 cut(s)	536, 1130
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	3 cut(s)	604, 1151, 1252
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	7 cut(s)	579, 777, 1201, 1323, 1342, 1647, 1651
AfiI	CCNNNNNNNGG	7 cut(s)	336, 388, 701, 1112, 1113, 1666, 1667
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	9 cut(s)	134, 242, 451, 597, 660, 722, 737, 1009, 1150
AhdI	GACNNNNNGTC	1 cut(s)	313
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	3 cut(s)	418, 1278, 1577
AluBI	AGCT	9 cut(s)	285, 355, 436, 611, 877, 979, 1348, 1432, 1520
AluI	AGCT	9 cut(s)	285, 355, 436, 611, 877, 979, 1348, 1432, 1520
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	262, 321, 1593
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	536, 1130
AlwNI	CAGNNNCTG	1 cut(s)	1616
AoxI	GGCC	3 cut(s)	800, 956, 1025
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	5 cut(s)	285, 526, 647, 976, 1520
ApoI	RAATTY	3 cut(s)	604, 1151, 1252
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	9, 348
AspS9I	GGNCC	3 cut(s)	801, 1019, 1176
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	3 cut(s)	277, 1085, 1196
AvaII	GGWCC	2 cut(s)	1019, 1176
BaeGI	GKGCMC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	1027
BanII	GRGCYC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	5 cut(s)	272, 513, 634, 988, 1507
BccI	CCATC	7 cut(s)	262, 569, 914, 1106, 1444, 1528, 1627
BceAI	ACGGC	1 cut(s)	967
BciT130I	CCWGG	3 cut(s)	420, 1280, 1579
BclI	TGATCA	3 cut(s)	754, 1063, 1074
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	3 cut(s)	262, 321, 1593
BfaI	CTAG	3 cut(s)	669, 1140, 1662
BfmI	CTRYAG	1 cut(s)	1207
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	7 cut(s)	163, 286, 382, 527, 648, 977, 1521
BlsI	GCNGC	7 cut(s)	164, 287, 383, 528, 649, 978, 1522
Bme1390I	CCNGG	4 cut(s)	337, 420, 1280, 1579
Bme18I	GGWCC	2 cut(s)	1019, 1176
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	3 cut(s)	801, 1019, 1176
BmiI	GGNNCC	3 cut(s)	1020, 1177, 1638
BmrFI	CCNGG	4 cut(s)	337, 420, 1280, 1579
BmrI	ACTGGG	2 cut(s)	1626, 1676
BmsI	GCATC	2 cut(s)	634, 1178
BmuI	ACTGGG	2 cut(s)	1626, 1676
BpmI	CTGGAG	1 cut(s)	1623
BpuEI	CTTGAG	3 cut(s)	371, 965, 1430
BpuMI	CCSGG	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	1036
BsaAI	YACGTR	2 cut(s)	199, 1649
BsaBI	GATNNNNATC	1 cut(s)	1042
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	7 cut(s)	160, 418, 930, 1022, 1278, 1467, 1578
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	7 cut(s)	336, 388, 701, 1112, 1113, 1666, 1667
Bse1I	ACTGG	2 cut(s)	1621, 1671
Bse8I	GATNNNNATC	1 cut(s)	1042
BseBI	CCWGG	3 cut(s)	420, 1280, 1579
BseCI	ATCGAT	1 cut(s)	1036
BseDI	CCNNGG	7 cut(s)	160, 418, 930, 1022, 1278, 1467, 1578
BseGI	GGATG	8 cut(s)	484, 586, 685, 925, 940, 1436, 1543, 1638
BseJI	GATNNNNATC	1 cut(s)	1042
BseLI	CCNNNNNNNGG	7 cut(s)	336, 388, 701, 1112, 1113, 1666, 1667
BseMII	CTCAG	2 cut(s)	338, 862
BseNI	ACTGG	2 cut(s)	1621, 1671
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	5 cut(s)	272, 513, 634, 988, 1507
Bsh1236I	CGCG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	802, 958, 1027
BshVI	ATCGAT	1 cut(s)	1036
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	248, 320, 337, 571, 695
BslFI	GGGAC	4 cut(s)	313, 1032, 1129, 1633
BslI	CCNNNNNNNGG	7 cut(s)	336, 388, 701, 1112, 1113, 1666, 1667
BsmAI	GTCTC	3 cut(s)	262, 321, 1593
BsmBI	CGTCTC	2 cut(s)	262, 321
BsmFI	GGGAC	4 cut(s)	313, 1032, 1129, 1633
BsmI	GAATGC	2 cut(s)	218, 1250
BsnI	GGCC	3 cut(s)	802, 958, 1027
Bsp1286I	GDGCHC	2 cut(s)	306, 445
Bsp1407I	TGTACA	2 cut(s)	775, 1321
Bsp143I	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
Bsp19I	CCATGG	1 cut(s)	1022
BspACI	CCGC	4 cut(s)	160, 162, 288, 382
BspANI	GGCC	3 cut(s)	802, 958, 1027
BspCNI	CTCAG	2 cut(s)	337, 861
BspDI	ATCGAT	1 cut(s)	1036
BspFNI	CGCG	1 cut(s)	162
BspHI	TCATGA	2 cut(s)	538, 751
BspLI	GGNNCC	3 cut(s)	1020, 1177, 1638
BspPI	GGATC	2 cut(s)	536, 1130
BsrGI	TGTACA	2 cut(s)	775, 1321
BsrI	ACTGG	2 cut(s)	1621, 1671
BssECI	CCNNGG	7 cut(s)	160, 418, 930, 1022, 1278, 1467, 1578
BssMI	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
BssNAI	GTATAC	1 cut(s)	683
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	3 cut(s)	930, 1022, 1467
Bst1107I	GTATAC	1 cut(s)	683
Bst2UI	CCWGG	3 cut(s)	420, 1280, 1579
Bst4CI	ACNGT	3 cut(s)	792, 1146, 1208
BstACI	GRCGYC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstAUI	TGTACA	2 cut(s)	775, 1321
BstBAI	YACGTR	2 cut(s)	199, 1649
BstC8I	GCNNGC	3 cut(s)	870, 956, 1657
BstDEI	CTNAG	3 cut(s)	12, 324, 848
BstDSI	CCRYGG	2 cut(s)	160, 1022
BstF5I	GGATG	8 cut(s)	484, 586, 685, 925, 940, 1436, 1543, 1638
BstFNI	CGCG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	2 cut(s)	9, 348
BstKTI	GATC	8 cut(s)	210, 544, 757, 1040, 1066, 1077, 1138, 1189
BstMAI	GTCTC	3 cut(s)	262, 321, 1593
BstMBI	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 224, 352, 874
BstNI	CCWGG	3 cut(s)	420, 1280, 1579
BstNSI	RCATGY	4 cut(s)	782, 905, 1264, 1341
BstSCI	CCNGG	4 cut(s)	335, 418, 1278, 1577
BstSFI	CTRYAG	1 cut(s)	1207
BstSLI	GKGCMC	1 cut(s)	306
BstSNI	TACGTA	1 cut(s)	1649
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	5 cut(s)	272, 513, 634, 988, 1507
BstZ17I	GTATAC	1 cut(s)	683
Bsu15I	ATCGAT	1 cut(s)	1036
BsuRI	GGCC	3 cut(s)	802, 958, 1027
BsuTUI	ATCGAT	1 cut(s)	1036
BtgI	CCRYGG	2 cut(s)	160, 1022
BtgZI	GCGATG	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	8 cut(s)	484, 586, 685, 925, 940, 1436, 1543, 1638
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	870, 956, 1657
CaiI	CAGNNNCTG	1 cut(s)	1616
CciI	TCATGA	2 cut(s)	538, 751
CfoI	GCGC	2 cut(s)	9, 348
Cfr13I	GGNCC	3 cut(s)	801, 1019, 1176
Cfr42I	CCGCGG	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	1036
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	7 cut(s)	578, 776, 1200, 1322, 1341, 1646, 1650
CviQI	GTAC	7 cut(s)	578, 776, 1200, 1322, 1341, 1646, 1650
DdeI	CTNAG	3 cut(s)	12, 324, 848
DpnI	GATC	8 cut(s)	209, 543, 756, 1039, 1065, 1076, 1137, 1188
DpnII	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
DraI	TTTAAA	1 cut(s)	1515
DriI	GACNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	1025
Eam1105I	GACNNNNNGTC	1 cut(s)	313
Eco105I	TACGTA	1 cut(s)	1649
Eco130I	CCWWGG	3 cut(s)	930, 1022, 1467
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	1019, 1176
Eco57I	CTGAAG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	1176
EcoRII	CCWGG	3 cut(s)	418, 1278, 1577
EcoT14I	CCWWGG	3 cut(s)	930, 1022, 1467
EcoT22I	ATGCAT	3 cut(s)	516, 810, 907
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	3 cut(s)	930, 1022, 1467
Esp3I	CGTCTC	2 cut(s)	262, 321
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	4 cut(s)	313, 1032, 1129, 1633
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	3 cut(s)	754, 1063, 1074
FblI	GTMKAC	2 cut(s)	363, 682
Fnu4HI	GCNGC	7 cut(s)	163, 286, 382, 527, 648, 977, 1521
FokI	GGATG	8 cut(s)	491, 573, 672, 932, 947, 1423, 1550, 1645
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	7 cut(s)	163, 286, 382, 527, 648, 977, 1521
FspAI	RTGCGCAY	1 cut(s)	8
FspBI	CTAG	3 cut(s)	669, 1140, 1662
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	2 cut(s)	8, 347
GluI	GCNGC	7 cut(s)	163, 286, 382, 527, 648, 977, 1521
GsuI	CTGGAG	1 cut(s)	1623
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	802, 958, 1027
HapII	CCGG	5 cut(s)	248, 320, 337, 571, 695
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	2 cut(s)	9, 348
Hin1I	GRCGYC	1 cut(s)	251
Hin6I	GCGC	2 cut(s)	7, 346
HinP1I	GCGC	2 cut(s)	7, 346
HincII	GTYRAC	2 cut(s)	858, 949
HindII	GTYRAC	2 cut(s)	858, 949
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	392, 737, 796
HpaII	CCGG	5 cut(s)	248, 320, 337, 571, 695
HphI	GGTGA	3 cut(s)	277, 1085, 1196
Hpy166II	GTNNAC	6 cut(s)	304, 364, 683, 858, 949, 1058
Hpy188I	TCNGA	2 cut(s)	1084, 1258
Hpy188III	TCNNGA	9 cut(s)	38, 539, 752, 758, 982, 1214, 1531, 1596, 1640
Hpy8I	GTNNAC	6 cut(s)	304, 364, 683, 858, 949, 1058
Hpy99I	CGWCG	4 cut(s)	193, 316, 407, 431
HpyAV	CCTTC	2 cut(s)	116, 467
HpyCH4III	ACNGT	3 cut(s)	792, 1146, 1208
HpyCH4IV	ACGT	3 cut(s)	198, 311, 1648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 224, 352, 874
HpyF3I	CTNAG	3 cut(s)	12, 324, 848
HpySE526I	ACGT	3 cut(s)	198, 311, 1648
Hsp92I	GRCGYC	1 cut(s)	251
HspAI	GCGC	2 cut(s)	7, 346
Ksp22I	TGATCA	3 cut(s)	754, 1063, 1074
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
LmnI	GCTCC	4 cut(s)	973, 1353, 1437, 1642
Lsp1109I	GCAGC	5 cut(s)	272, 513, 634, 988, 1507
LweI	GCATC	2 cut(s)	634, 1178
MaeI	CTAG	3 cut(s)	669, 1140, 1662
MaeII	ACGT	3 cut(s)	198, 311, 1648
MaeIII	GTNAC	2 cut(s)	923, 1366
MalI	GATC	8 cut(s)	209, 543, 756, 1039, 1065, 1076, 1137, 1188
MboI	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
MboII	GAAGA	4 cut(s)	368, 512, 1021, 1038
MfeI	CAATTG	1 cut(s)	1455
MhlI	GDGCHC	2 cut(s)	306, 445
MlsI	TGGCCA	1 cut(s)	1027
MluNI	TGGCCA	1 cut(s)	1027
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	2 cut(s)	456, 614
Mox20I	TGGCCA	1 cut(s)	1027
Mph1103I	ATGCAT	3 cut(s)	516, 810, 907
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	1027
MseI	TTAA	4 cut(s)	20, 1227, 1428, 1514
MslI	CAYNNNNRTG	2 cut(s)	1314, 1627
Msp20I	TGGCCA	1 cut(s)	1027
MspA1I	CMGCKG	2 cut(s)	162, 611
MspI	CCGG	5 cut(s)	248, 320, 337, 571, 695
MspR9I	CCNGG	4 cut(s)	337, 420, 1280, 1579
MunI	CAATTG	1 cut(s)	1455
Mva1269I	GAATGC	2 cut(s)	218, 1250
MvaI	CCWGG	3 cut(s)	420, 1280, 1579
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	13, 224, 352, 874
NciI	CCSGG	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	1022
NdeII	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
NlaIV	GGNNCC	3 cut(s)	1020, 1177, 1638
NsbI	TGCGCA	1 cut(s)	8
NsiI	ATGCAT	3 cut(s)	516, 810, 907
NspI	RCATGY	4 cut(s)	782, 905, 1264, 1341
PagI	TCATGA	2 cut(s)	538, 751
PctI	GAATGC	2 cut(s)	218, 1250
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	392, 737
PkrI	GCNGC	7 cut(s)	164, 287, 383, 528, 649, 978, 1522
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
Ppu21I	YACGTR	2 cut(s)	199, 1649
PpuMI	RGGWCCY	1 cut(s)	1176
Psp5II	RGGWCCY	1 cut(s)	1176
Psp6I	CCWGG	3 cut(s)	418, 1278, 1577
PspGI	CCWGG	3 cut(s)	418, 1278, 1577
PspN4I	GGNNCC	3 cut(s)	1020, 1177, 1638
PspPI	GGNCC	3 cut(s)	801, 1019, 1176
PspPPI	RGGWCCY	1 cut(s)	1176
PstNI	CAGNNNCTG	1 cut(s)	1616
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	7 cut(s)	579, 777, 1201, 1323, 1342, 1647, 1651
RsaNI	GTAC	7 cut(s)	578, 776, 1200, 1322, 1341, 1646, 1650
RseI	CAYNNNNRTG	2 cut(s)	1314, 1627
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	4 cut(s)	20, 1227, 1428, 1514
SatI	GCNGC	7 cut(s)	163, 286, 382, 527, 648, 977, 1521
Sau3AI	GATC	8 cut(s)	207, 541, 754, 1037, 1063, 1074, 1135, 1186
Sau96I	GGNCC	3 cut(s)	801, 1019, 1176
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	4 cut(s)	337, 420, 1280, 1579
SduI	GDGCHC	2 cut(s)	306, 445
SfaNI	GCATC	2 cut(s)	634, 1178
SfcI	CTRYAG	1 cut(s)	1207
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	2 cut(s)	1019, 1176
SmiMI	CAYNNNNRTG	2 cut(s)	1314, 1627
SmlI	CTYRAG	3 cut(s)	386, 980, 1445
SmoI	CTYRAG	3 cut(s)	386, 980, 1445
SnaBI	TACGTA	1 cut(s)	1649
SsiI	CCGC	4 cut(s)	160, 162, 288, 382
SspI	AATATT	1 cut(s)	770
SspMI	CTAG	3 cut(s)	669, 1140, 1662
StyD4I	CCNGG	4 cut(s)	335, 418, 1278, 1577
StyI	CCWWGG	3 cut(s)	930, 1022, 1467
TaaI	ACNGT	3 cut(s)	792, 1146, 1208
TaiI	ACGT	3 cut(s)	201, 314, 1651
TaqI	TCGA	3 cut(s)	426, 564, 1036
TaqII	GACCGA	1 cut(s)	68
TatI	WGTACW	2 cut(s)	775, 1321
TauI	GCSGC	2 cut(s)	165, 384
TfiI	GAWTC	2 cut(s)	392, 737
Tru1I	TTAA	4 cut(s)	20, 1227, 1428, 1514
Tru9I	TTAA	4 cut(s)	20, 1227, 1428, 1514
TscAI	CASTG	1 cut(s)	306
TseI	GCWGC	5 cut(s)	285, 526, 647, 976, 1520
TspDTI	ATGAA	7 cut(s)	575, 615, 780, 825, 1318, 1554, 1560
TspGWI	ACGGA	3 cut(s)	177, 244, 986
TspRI	CASTG	1 cut(s)	306
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	1019, 1176
XapI	RAATTY	3 cut(s)	604, 1151, 1252
XceI	RCATGY	4 cut(s)	782, 905, 1264, 1341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1531
XmiI	GTMKAC	2 cut(s)	363, 682
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	3 cut(s)	669, 1140, 1662
Zsp2I	ATGCAT	3 cut(s)	516, 810, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.