Rmu_co8370501.1_g000001

Tyrosine kinase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8370501.1
OG0001013
Physical Location & Seq
Reverse (-)
1 .. 1019
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8370501.1_g000001.1.cds

Sequence Viewer

Length: 372 bp
atgatccgcgaactcaactttacgtatgctttggatgtgaatgtggagagggcacaggatgtcctcatgcataaaagactattgcatgtggcacatgaccctgccactagacctgcaatcgaagtccgtcttgtgcaggttcatttttcttctaatttaagctcatccagaaaagaagatattcagtgttatggttttgctgtcaaacagagtcatccaccaccagcttttggtttgtcagaagaccttgaacttgctcttgaagccaagaagttacaagttcaacatgggaataccactgtgaatgccttttcaaggccgatgcatgaaattacaatttcaactaatgacaagcccaaactccttagtgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel Pkinase_Tyr

Protein Analysis

124

Amino Acids

14.01

Weight (kDa)

6.65

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 121, 127
AccB7I CCANNNNNTGG 1 cut(s) 230
AccII CGCG 1 cut(s) 9
AciI CCGC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 230, 315
AgsI TTSAA 5 cut(s) 251, 263, 284, 315, 342
AluBI AGCT 2 cut(s) 162, 227
AluI AGCT 2 cut(s) 162, 227
AoxI GGCC 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 249
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 2 cut(s) 121, 127
BmsI GCATC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 315
BseGI GGATG 4 cut(s) 40, 64, 164, 214
BseLI CCNNNNNNNGG 2 cut(s) 230, 315
BseSI GKGCMC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 155
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 230, 315
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 7
BspANI GGCC 1 cut(s) 319
BspFNI CGCG 1 cut(s) 9
BspMI ACCTGC 2 cut(s) 121, 127
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 365
BstENI CCTNNNNNAGG 1 cut(s) 313
BstF5I GGATG 4 cut(s) 40, 64, 164, 214
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNSI RCATGY 1 cut(s) 89
BstSLI GKGCMC 1 cut(s) 55
BstSNI TACGTA 1 cut(s) 24
BstUI CGCG 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 4 cut(s) 40, 64, 164, 214
BtsIMutI CAGTG 2 cut(s) 191, 297
BveI ACCTGC 2 cut(s) 121, 127
CviAII CATG 5 cut(s) 67, 86, 95, 287, 326
CviJI RGCY 5 cut(s) 162, 227, 266, 319, 355
CviKI_1 RGCY 5 cut(s) 162, 227, 266, 319, 355
DdeI CTNAG 1 cut(s) 365
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco105I TACGTA 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoT22I ATGCAT 2 cut(s) 72, 327
FaeI CATG 5 cut(s) 70, 89, 98, 290, 329
FaiI YATR 8 cut(s) 27, 68, 72, 87, 96, 192, 288, 327
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 5 cut(s) 66, 85, 94, 286, 325
FokI GGATG 4 cut(s) 47, 71, 151, 201
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 5 cut(s) 70, 89, 98, 290, 329
HinfI GANTC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 168, 260
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 70, 85, 116, 136, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 5 cut(s) 70, 89, 98, 290, 329
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 6 cut(s) 41, 114, 122, 126, 181, 237
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 273
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 141, 188, 254
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 3 cut(s) 154, 330, 336
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 2 cut(s) 42, 74
Mph1103I ATGCAT 2 cut(s) 72, 327
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 310
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 1 cut(s) 3
NlaIII CATG 5 cut(s) 70, 89, 98, 290, 329
NsiI ATGCAT 2 cut(s) 72, 327
NspI RCATGY 1 cut(s) 89
PctI GAATGC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 180
PflMI CCANNNNNTGG 1 cut(s) 230
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
Ppu21I YACGTR 1 cut(s) 24
SaqAI TTAA 1 cut(s) 158
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 220
SduI GDGCHC 1 cut(s) 55
SetI ASST 6 cut(s) 26, 115, 141, 164, 229, 249
SfaNI GCATC 1 cut(s) 312
SnaBI TACGTA 1 cut(s) 24
Sse9I AATT 3 cut(s) 154, 330, 336
SsiI CCGC 1 cut(s) 7
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 120
TasI AATT 3 cut(s) 154, 330, 336
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 2 cut(s) 191, 304
TspDTI ATGAA 2 cut(s) 131, 342
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 191, 304
Van91I CCANNNNNTGG 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 313
XceI RCATGY 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 2 cut(s) 72, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.