Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012878.1

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Reverse (-)

24013 .. 27701

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012878.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atgcttgccaaatggattatgctacatttaattgaatatcttattaactgttcaaaatcttatgttttgcatcagttgacatccttattatctgacatcggactgaacattcaagaagcacatgctttttctacaacagatggctactccttggatgtctttgtcgttgatggttgggaatgtgaggaaactgaacggcttagacaggcactggcaaaagaattactatggagtgagaatccttgcttggattataatgtcatctcccctgttctggggcaagacactggaatgaaggtcattggtgatcatgccatgttaatggtacaagactatgcctgggaaattgaagcaagcctattgacatatgaaaggaaaattgcttctggatcaaatggtgatttatatcaaggtactttctgtggacaagatgtggccattaaagttcttagcactgagcgcctaaatgaaaccatgagggagtttacccaagaagtctctatcatgagaaaagttcggcacaagaatgtcgttcaattcattggggcttgcactaaacctcctaacctttgcatagttactgaatttttgtctggtggaagcatgtacgactttctccataagcaaaagggttctttttcacttcagtccttgctcaaagttgcagttgatatttccaggggaatgaaatacttgcaccaaaataatataatccacagggacttgaaagctgctaatcttttgacggatggaaatggagttgtgaaagtagctgattttgggattgctagagtacaggcacaatctggtgtcatgactgcagaaactggcacctaccgttggatggctccagaggtcatagaacataaaccttatgatcacaaagccgatgtttttagctttggggttattctgtgggagcttcttacaggaaagcttccctatgagaacttaactccactacaagcagcacttggcgttgtcaagaagggtctgaggcctacgattccaaagcacactaaccccatgttagtggagttaatggagagttgctggcagcaagatgcatcgttgagacctgagttctcagatattgtaaatatgttgcgacaaatggctaggagggttgccgatgaaagggaggatcgacgaaagggaaaatcagcaaaagtagtacccaccctcaggcatggcagtggcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel Pkinase_Tyr

Protein Analysis

401

Amino Acids

45.18

Weight (kDa)

6.33

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	830
AclWI	GGATC	2 cut(s)	397, 1152
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	5 cut(s)	327, 415, 608, 795, 1176
AfiI	CCNNNNNNNGG	6 cut(s)	274, 275, 840, 844, 1137, 1185
AgsI	TTSAA	6 cut(s)	35, 54, 113, 350, 536, 727
AjnI	CCWGG	2 cut(s)	338, 677
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	5 cut(s)	731, 773, 900, 922, 937
AluI	AGCT	5 cut(s)	731, 773, 900, 922, 937
Alw26I	GTCTC	2 cut(s)	502, 1069
AlwI	GGATC	2 cut(s)	397, 1152
AlwNI	CAGNNNCTG	2 cut(s)	211, 827
AoxI	GGCC	2 cut(s)	435, 998
ApeKI	GCWGC	3 cut(s)	731, 968, 1057
ApoI	RAATTY	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	317, 410
AxyI	CCTNAGG	1 cut(s)	1184
BalI	TGGCCA	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	830
BbvI	GCAGC	3 cut(s)	718, 980, 1069
BccI	CCATC	4 cut(s)	134, 164, 743, 838
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	2 cut(s)	340, 679
BclI	TGATCA	2 cut(s)	307, 877
BcoDI	GTCTC	2 cut(s)	502, 1069
BfaI	CTAG	2 cut(s)	789, 1119
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	463
BisI	GCNGC	3 cut(s)	732, 969, 1058
BlsI	GCNGC	3 cut(s)	733, 970, 1059
Bme1390I	CCNGG	2 cut(s)	340, 679
BmiI	GGNNCC	2 cut(s)	832, 849
BmrFI	CCNGG	2 cut(s)	340, 679
BmsI	GCATC	3 cut(s)	79, 1054, 1076
BpmI	CTGGAG	1 cut(s)	834
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	1069
BsaJI	CCNNGG	3 cut(s)	150, 339, 678
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	6 cut(s)	274, 275, 840, 844, 1137, 1185
Bse1I	ACTGG	3 cut(s)	216, 292, 832
Bse21I	CCTNAGG	1 cut(s)	1184
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	340, 679
BseDI	CCNNGG	3 cut(s)	150, 339, 678
BseGI	GGATG	4 cut(s)	80, 160, 754, 849
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	6 cut(s)	274, 275, 840, 844, 1137, 1185
BseMII	CTCAG	5 cut(s)	447, 986, 1071, 1101, 1198
BseNI	ACTGG	3 cut(s)	216, 292, 832
BseXI	GCAGC	3 cut(s)	718, 980, 1069
BshFI	GGCC	2 cut(s)	437, 1000
BshNI	GGYRCC	1 cut(s)	830
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	6 cut(s)	274, 275, 840, 844, 1137, 1185
BsmAI	GTCTC	2 cut(s)	502, 1069
BsmFI	GGGAC	1 cut(s)	734
BsnI	GGCC	2 cut(s)	437, 1000
Bso31I	GGTCTC	1 cut(s)	1069
Bsp143I	GATC	4 cut(s)	307, 389, 877, 1144
BspANI	GGCC	2 cut(s)	437, 1000
BspCNI	CTCAG	5 cut(s)	448, 987, 1072, 1100, 1197
BspHI	TCATGA	2 cut(s)	504, 813
BspLI	GGNNCC	2 cut(s)	832, 849
BspMAI	CTGCAG	1 cut(s)	823
BspPI	GGATC	2 cut(s)	397, 1152
BspT107I	GGYRCC	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	1069
BsrI	ACTGG	3 cut(s)	216, 292, 832
BssECI	CCNNGG	3 cut(s)	150, 339, 678
BssMI	GATC	4 cut(s)	307, 389, 877, 1144
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	340, 679
Bst4CI	ACNGT	2 cut(s)	50, 839
BstC8I	GCNNGC	4 cut(s)	6, 355, 550, 1055
BstDEI	CTNAG	7 cut(s)	200, 449, 456, 995, 1080, 1087, 1184
BstF5I	GGATG	4 cut(s)	80, 160, 754, 849
BstH2I	RGCGCY	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	4 cut(s)	310, 392, 880, 1147
BstMAI	GTCTC	2 cut(s)	502, 1069
BstMBI	GATC	4 cut(s)	307, 389, 877, 1144
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	2 cut(s)	340, 679
BstNSI	RCATGY	2 cut(s)	125, 607
BstSCI	CCNGG	2 cut(s)	338, 677
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	3 cut(s)	718, 980, 1069
BstXI	CCANNNNNNTGG	2 cut(s)	322, 1033
Bsu36I	CCTNAGG	1 cut(s)	1184
BsuRI	GGCC	2 cut(s)	437, 1000
BtsCI	GGATG	4 cut(s)	80, 160, 754, 849
BtsI	GCAGTG	1 cut(s)	1201
BtsIMutI	CAGTG	4 cut(s)	209, 285, 453, 1201
Cac8I	GCNNGC	4 cut(s)	6, 355, 550, 1055
CaiI	CAGNNNCTG	2 cut(s)	211, 827
CciI	TCATGA	2 cut(s)	504, 813
CfoI	GCGC	1 cut(s)	462
Csp6I	GTAC	5 cut(s)	326, 414, 607, 794, 1175
CviAII	CATG	9 cut(s)	122, 311, 316, 475, 505, 604, 814, 1027, 1190
CviQI	GTAC	5 cut(s)	326, 414, 607, 794, 1175
DdeI	CTNAG	7 cut(s)	200, 449, 456, 995, 1080, 1087, 1184
DpnI	GATC	4 cut(s)	309, 391, 879, 1146
DpnII	GATC	4 cut(s)	307, 389, 877, 1144
EaeI	YGGCCR	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	1000
Eco31I	GGTCTC	1 cut(s)	1069
Eco57I	CTGAAG	1 cut(s)	629
Eco81I	CCTNAGG	1 cut(s)	1184
EcoRII	CCWGG	2 cut(s)	338, 677
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	1069
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	9 cut(s)	125, 314, 319, 478, 508, 607, 817, 1030, 1193
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	9 cut(s)	121, 310, 315, 474, 504, 603, 813, 1026, 1189
FauNDI	CATATG	1 cut(s)	367
FbaI	TGATCA	2 cut(s)	307, 877
Fnu4HI	GCNGC	3 cut(s)	732, 969, 1058
FokI	GGATG	4 cut(s)	67, 167, 761, 856
Fsp4HI	GCNGC	3 cut(s)	732, 969, 1058
FspBI	CTAG	2 cut(s)	789, 1119
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	3 cut(s)	732, 969, 1058
GsuI	CTGGAG	1 cut(s)	834
HaeII	RGCGCY	1 cut(s)	463
HaeIII	GGCC	2 cut(s)	437, 1000
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	9 cut(s)	125, 314, 319, 478, 508, 607, 817, 1030, 1193
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	2 cut(s)	238, 1006
HphI	GGTGA	2 cut(s)	317, 410
Hpy166II	GTNNAC	3 cut(s)	78, 425, 486
Hpy188I	TCNGA	4 cut(s)	94, 101, 996, 1090
Hpy188III	TCNNGA	6 cut(s)	113, 387, 505, 814, 851, 985
Hpy8I	GTNNAC	3 cut(s)	78, 425, 486
Hpy99I	CGWCG	1 cut(s)	1152
HpyAV	CCTTC	2 cut(s)	289, 982
HpyCH4III	ACNGT	2 cut(s)	50, 839
HpyCH4V	TGCA	7 cut(s)	70, 552, 573, 665, 697, 821, 1067
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	7 cut(s)	200, 449, 456, 995, 1080, 1087, 1184
Hsp92II	CATG	9 cut(s)	125, 314, 319, 478, 508, 607, 817, 1030, 1193
HspAI	GCGC	1 cut(s)	460
Ksp22I	TGATCA	2 cut(s)	307, 877
Kzo9I	GATC	4 cut(s)	307, 389, 877, 1144
LmnI	GCTCC	2 cut(s)	853, 919
Lsp1109I	GCAGC	3 cut(s)	718, 980, 1069
LweI	GCATC	3 cut(s)	79, 1054, 1076
MaeI	CTAG	2 cut(s)	789, 1119
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	4 cut(s)	309, 391, 879, 1146
MboI	GATC	4 cut(s)	307, 389, 877, 1144
MlsI	TGGCCA	1 cut(s)	437
MluCI	AATT	6 cut(s)	30, 221, 345, 378, 536, 584
MluNI	TGGCCA	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	821
MnlI	CCTC	8 cut(s)	178, 471, 570, 847, 990, 1116, 1135, 1193
Mox20I	TGGCCA	1 cut(s)	437
Mph1103I	ATGCAT	1 cut(s)	1069
MscI	TGGCCA	1 cut(s)	437
MseI	TTAA	6 cut(s)	29, 45, 320, 441, 953, 1040
MslI	CAYNNNNRTG	5 cut(s)	290, 320, 525, 1031, 1194
Msp20I	TGGCCA	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	340, 679
MvaI	CCWGG	2 cut(s)	340, 679
MwoI	GCNNNNNNNGC	1 cut(s)	459
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	4 cut(s)	307, 389, 877, 1144
NlaIII	CATG	9 cut(s)	125, 314, 319, 478, 508, 607, 817, 1030, 1193
NlaIV	GGNNCC	2 cut(s)	832, 849
NsiI	ATGCAT	1 cut(s)	1069
NspI	RCATGY	2 cut(s)	125, 607
PagI	TCATGA	2 cut(s)	504, 813
PceI	AGGCCT	1 cut(s)	1000
PfeI	GAWTC	2 cut(s)	238, 1006
PkrI	GCNGC	3 cut(s)	733, 970, 1059
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	338, 677
PspGI	CCWGG	2 cut(s)	338, 677
PspN4I	GGNNCC	2 cut(s)	832, 849
PstI	CTGCAG	1 cut(s)	823
PstNI	CAGNNNCTG	2 cut(s)	211, 827
RsaI	GTAC	5 cut(s)	327, 415, 608, 795, 1176
RsaNI	GTAC	5 cut(s)	326, 414, 607, 794, 1175
RseI	CAYNNNNRTG	5 cut(s)	290, 320, 525, 1031, 1194
SaqAI	TTAA	6 cut(s)	29, 45, 320, 441, 953, 1040
SatI	GCNGC	3 cut(s)	732, 969, 1058
Sau3AI	GATC	4 cut(s)	307, 389, 877, 1144
ScrFI	CCNGG	2 cut(s)	340, 679
SfaNI	GCATC	3 cut(s)	79, 1054, 1076
SfcI	CTRYAG	1 cut(s)	819
SmiMI	CAYNNNNRTG	5 cut(s)	290, 320, 525, 1031, 1194
Sse9I	AATT	6 cut(s)	30, 221, 345, 378, 536, 584
SseBI	AGGCCT	1 cut(s)	1000
SspMI	CTAG	2 cut(s)	789, 1119
StuI	AGGCCT	1 cut(s)	1000
StyD4I	CCNGG	2 cut(s)	338, 677
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	50, 839
TaqI	TCGA	1 cut(s)	1147
TasI	AATT	6 cut(s)	30, 221, 345, 378, 536, 584
TatI	WGTACW	1 cut(s)	793
TfiI	GAWTC	2 cut(s)	238, 1006
Tru1I	TTAA	6 cut(s)	29, 45, 320, 441, 953, 1040
Tru9I	TTAA	6 cut(s)	29, 45, 320, 441, 953, 1040
TscAI	CASTG	4 cut(s)	216, 292, 460, 1201
TseI	GCWGC	3 cut(s)	731, 968, 1057
TspDTI	ATGAA	6 cut(s)	308, 384, 483, 529, 701, 1149
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	4 cut(s)	216, 292, 460, 1201
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	2 cut(s)	125, 607
XspI	CTAG	2 cut(s)	789, 1119
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.