Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Reverse (-)

41054305 .. 41060480

Gene Structure 6176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGGTGCGCACTAAGCCGTTAAACTTTCTGCGAAATCCAGACACTCTCTCATCATATAAAAAAATCCCATTTTATCTCGGTCGTCATTTTTTATTTCCCCAAATCCTTCCTTATATAATTCTCTGTCAGTTTGAACCCTCTCTCTCTCTCTCTCTCTCTCAAATCCGCGGCTATATAAACCCAGACCTCCCTCCGTCGTTTCACGTAAAAACGATCTCTCTCGCATTCTCTGCTTTCTACTCGCTTCAATTTCCGGCGTCCGTCTCAATGGTGATGGACGACAACGAGAGCTGCGGGAGTAGAGCAGTGCACGACACGTCGTCTCCGGCTCAGTCCCACTCCCGGCAGCAGCGCCAGAAGCTTCAGGTCTACAATGAGGTTCTTCGCCGCCTCAAGGACTCTCAAAACGACGAGGCTATTCTCCCTGGCTTCGACGATGAGCTTTGGGCTCACTTCAATCGCCTTCCCACTCGGTATGCGTTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTTATGCATAAAAGGTTGCTGCATTTGGCTCATGATCCTGCTCAAAGACCAGCCATCGAAATCCGGCTCGTACAGGTTCATCCAACTTCAAATGGGAATTCAGCTGATTCTGTCAATTCAGATTCTCTGGGTAAAGATGCTGCCCAAAGTTCAAAGTTATCTAGCAGACAAAGTATACATCCACCTCCGGCATTTGGCTCATCGCCCAACCTTGAAGCCCTTGCACTTGAATCAAATAAATCTCATGATCAAGATGATGAATATTCTGTACATGCCAACACACAGTTGAGTCGGCCCATGCATGAAATCACTTTCTCAACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCAGAGCTTGGGCTGAATATCCAAGAAGCACATGCATTTTCCACGCTGGATGGTTACTCCTTGGATGTCTTTGTTGTTGACGGCTGGCCTTACGAGGAAACGGAGCAGCTCAAGACTGCTTTGGAAAAGGAAGTTTTGAAGATTGAGGGACCATGGCCAATACATCGATCATCATCTTCTGGTAGTGAACATGATCAAGTAGTGATCAAATCTGAACCTAATCAACTGATTATACCCAATGATGGGACTGATGTATGGGAAATTGATCCTAGACAGTTGAAATTTGGAAACAAAGTTGCATCTGGGTCCTGTGGTGATCTATACAAAGGTACTTACTGTAGTCAAGAAGTGGCGATTAAAGTCCTCAAACCTGAATGCGTAAATTCAGACATGCAAAAAGATTTTGCCCAGGAAGTCTTTATTATGAGGAAAGTTCGACATAAGAATGTTGTACAATTCATTGGTGCATGTACCAAGCTCCCAAGCCTGTGTATTGTAACAGAATATATGTCTGGTGGAAGTGTGTATGACTACTTACATAAACAAAAGGGTGTTTTTAAGCTCCCATCCTTGCTCAAGGTAGCAATTGATGTTGCCAAGGGAATGACCTACTTGCACCAGAATAACATAATCCACAGGGATTTAAAAGCTGCCAATCTCTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTTGGGGTTGCCAGGGTCAAGTCTCAATCAGGAGTAATGACAGCAGAAACTGGGACATATAGGTGGATGGCTCCAGAGGTACGTACTGCCTGCCCTAAACTGGGGGGTGTGTGTGAGAGAGAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

566

Amino Acids

63.39

Weight (kDa)

6.21

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	273 - 320	9.7e-07	ACT domain
PK_Tyr_Ser-Thr	PF07714	385 - 551	1.1e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	388 - 551	1e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
AccI	GTMKAC	2 cut(s)	369, 688
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	166, 168, 294, 388
AclWI	GGATC	2 cut(s)	542, 1136
AcoI	YGGCCR	1 cut(s)	1031
AcsI	RAATTY	3 cut(s)	610, 1157, 1258
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	7 cut(s)	585, 783, 1207, 1329, 1348, 1653, 1657
AfiI	CCNNNNNNNGG	7 cut(s)	342, 394, 707, 1118, 1119, 1672, 1673
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	9 cut(s)	134, 248, 457, 603, 666, 728, 743, 1015, 1156
AhdI	GACNNNNNGTC	1 cut(s)	319
AjiI	CACGTC	1 cut(s)	318
AjnI	CCWGG	3 cut(s)	424, 1284, 1583
AluBI	AGCT	9 cut(s)	291, 361, 442, 617, 883, 985, 1354, 1438, 1526
AluI	AGCT	9 cut(s)	291, 361, 442, 617, 883, 985, 1354, 1438, 1526
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	3 cut(s)	268, 327, 1599
Alw44I	GTGCAC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	542, 1136
AlwNI	CAGNNNCTG	1 cut(s)	1622
AoxI	GGCC	3 cut(s)	806, 962, 1031
ApaLI	GTGCAC	1 cut(s)	308
ApeKI	GCWGC	7 cut(s)	291, 346, 349, 532, 653, 982, 1526
ApoI	RAATTY	3 cut(s)	610, 1157, 1258
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	2 cut(s)	9, 354
AspS9I	GGNCC	3 cut(s)	807, 1025, 1182
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	283, 1202
AvaII	GGWCC	2 cut(s)	1025, 1182
BaeGI	GKGCMC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	7 cut(s)	278, 358, 361, 519, 640, 994, 1513
BccI	CCATC	7 cut(s)	268, 575, 920, 1112, 1450, 1534, 1633
BceAI	ACGGC	1 cut(s)	973
BciT130I	CCWGG	3 cut(s)	426, 1286, 1585
BclI	TGATCA	3 cut(s)	760, 1069, 1080
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	268, 327, 1599
BfaI	CTAG	2 cut(s)	675, 1146
BfmI	CTRYAG	1 cut(s)	1213
BfoI	RGCGCY	1 cut(s)	355
BisI	GCNGC	9 cut(s)	169, 292, 347, 350, 388, 533, 654, 983, 1527
BlsI	GCNGC	9 cut(s)	170, 293, 348, 351, 389, 534, 655, 984, 1528
Bme1390I	CCNGG	4 cut(s)	343, 426, 1286, 1585
Bme18I	GGWCC	2 cut(s)	1025, 1182
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	318
BmgT120I	GGNCC	3 cut(s)	807, 1025, 1182
BmiI	GGNNCC	3 cut(s)	1026, 1183, 1644
BmrFI	CCNGG	4 cut(s)	343, 426, 1286, 1585
BmrI	ACTGGG	2 cut(s)	1632, 1682
BmsI	GCATC	2 cut(s)	640, 1184
BmuI	ACTGGG	2 cut(s)	1632, 1682
BpmI	CTGGAG	1 cut(s)	1629
BpuEI	CTTGAG	3 cut(s)	377, 971, 1436
BpuMI	CCSGG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	1042
BsaAI	YACGTR	2 cut(s)	205, 1655
BsaBI	GATNNNNATC	1 cut(s)	1048
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	7 cut(s)	166, 424, 936, 1028, 1284, 1473, 1584
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	7 cut(s)	342, 394, 707, 1118, 1119, 1672, 1673
Bse1I	ACTGG	2 cut(s)	1627, 1677
Bse8I	GATNNNNATC	1 cut(s)	1048
BseBI	CCWGG	3 cut(s)	426, 1286, 1585
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	7 cut(s)	166, 424, 936, 1028, 1284, 1473, 1584
BseGI	GGATG	8 cut(s)	490, 592, 691, 931, 946, 1442, 1549, 1644
BseJI	GATNNNNATC	1 cut(s)	1048
BseLI	CCNNNNNNNGG	7 cut(s)	342, 394, 707, 1118, 1119, 1672, 1673
BseMII	CTCAG	2 cut(s)	344, 868
BseNI	ACTGG	2 cut(s)	1627, 1677
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	7 cut(s)	278, 358, 361, 519, 640, 994, 1513
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	808, 964, 1033
BshVI	ATCGAT	1 cut(s)	1042
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	5 cut(s)	254, 326, 343, 577, 701
BslFI	GGGAC	4 cut(s)	319, 1038, 1135, 1639
BslI	CCNNNNNNNGG	7 cut(s)	342, 394, 707, 1118, 1119, 1672, 1673
BsmAI	GTCTC	3 cut(s)	268, 327, 1599
BsmBI	CGTCTC	2 cut(s)	268, 327
BsmFI	GGGAC	4 cut(s)	319, 1038, 1135, 1639
BsmI	GAATGC	2 cut(s)	224, 1256
BsnI	GGCC	3 cut(s)	808, 964, 1033
Bsp1286I	GDGCHC	2 cut(s)	312, 451
Bsp1407I	TGTACA	2 cut(s)	781, 1327
Bsp143I	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
Bsp19I	CCATGG	1 cut(s)	1028
BspACI	CCGC	4 cut(s)	166, 168, 294, 388
BspANI	GGCC	3 cut(s)	808, 964, 1033
BspCNI	CTCAG	2 cut(s)	343, 867
BspDI	ATCGAT	1 cut(s)	1042
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	544, 757
BspLI	GGNNCC	3 cut(s)	1026, 1183, 1644
BspPI	GGATC	2 cut(s)	542, 1136
BsrGI	TGTACA	2 cut(s)	781, 1327
BsrI	ACTGG	2 cut(s)	1627, 1677
BssECI	CCNNGG	7 cut(s)	166, 424, 936, 1028, 1284, 1473, 1584
BssMI	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
BssNAI	GTATAC	1 cut(s)	689
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	3 cut(s)	936, 1028, 1473
Bst1107I	GTATAC	1 cut(s)	689
Bst2UI	CCWGG	3 cut(s)	426, 1286, 1585
Bst4CI	ACNGT	3 cut(s)	798, 1152, 1214
BstACI	GRCGYC	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstAUI	TGTACA	2 cut(s)	781, 1327
BstBAI	YACGTR	2 cut(s)	205, 1655
BstC8I	GCNNGC	3 cut(s)	876, 962, 1663
BstDEI	CTNAG	3 cut(s)	12, 330, 854
BstDSI	CCRYGG	2 cut(s)	166, 1028
BstF5I	GGATG	8 cut(s)	490, 592, 691, 931, 946, 1442, 1549, 1644
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	2 cut(s)	9, 354
BstKTI	GATC	8 cut(s)	216, 550, 763, 1046, 1072, 1083, 1144, 1195
BstMAI	GTCTC	3 cut(s)	268, 327, 1599
BstMBI	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 230, 358, 880
BstNI	CCWGG	3 cut(s)	426, 1286, 1585
BstNSI	RCATGY	4 cut(s)	788, 911, 1270, 1347
BstSCI	CCNGG	4 cut(s)	341, 424, 1284, 1583
BstSFI	CTRYAG	1 cut(s)	1213
BstSLI	GKGCMC	1 cut(s)	312
BstSNI	TACGTA	1 cut(s)	1655
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	7 cut(s)	278, 358, 361, 519, 640, 994, 1513
BstZ17I	GTATAC	1 cut(s)	689
Bsu15I	ATCGAT	1 cut(s)	1042
BsuRI	GGCC	3 cut(s)	808, 964, 1033
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	2 cut(s)	166, 1028
BtgZI	GCGATG	1 cut(s)	699
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	8 cut(s)	490, 592, 691, 931, 946, 1442, 1549, 1644
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	876, 962, 1663
CaiI	CAGNNNCTG	1 cut(s)	1622
CciI	TCATGA	2 cut(s)	544, 757
CfoI	GCGC	2 cut(s)	9, 354
Cfr13I	GGNCC	3 cut(s)	807, 1025, 1182
Cfr42I	CCGCGG	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	1042
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	7 cut(s)	584, 782, 1206, 1328, 1347, 1652, 1656
CviQI	GTAC	7 cut(s)	584, 782, 1206, 1328, 1347, 1652, 1656
DdeI	CTNAG	3 cut(s)	12, 330, 854
DpnI	GATC	8 cut(s)	215, 549, 762, 1045, 1071, 1082, 1143, 1194
DpnII	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
DraI	TTTAAA	1 cut(s)	1521
DriI	GACNNNNNGTC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	1031
Eam1105I	GACNNNNNGTC	1 cut(s)	319
Eco105I	TACGTA	1 cut(s)	1655
Eco130I	CCWWGG	3 cut(s)	936, 1028, 1473
Eco24I	GRGCYC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	1025, 1182
Eco57I	CTGAAG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	1182
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	3 cut(s)	424, 1284, 1583
EcoT14I	CCWWGG	3 cut(s)	936, 1028, 1473
EcoT22I	ATGCAT	3 cut(s)	522, 816, 913
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	3 cut(s)	936, 1028, 1473
Esp3I	CGTCTC	2 cut(s)	268, 327
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	4 cut(s)	319, 1038, 1135, 1639
FauI	CCCGC	1 cut(s)	287
FbaI	TGATCA	3 cut(s)	760, 1069, 1080
FblI	GTMKAC	2 cut(s)	369, 688
Fnu4HI	GCNGC	9 cut(s)	169, 292, 347, 350, 388, 533, 654, 983, 1527
FokI	GGATG	8 cut(s)	497, 579, 678, 938, 953, 1429, 1556, 1651
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	9 cut(s)	169, 292, 347, 350, 388, 533, 654, 983, 1527
FspAI	RTGCGCAY	1 cut(s)	8
FspBI	CTAG	2 cut(s)	675, 1146
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	2 cut(s)	8, 353
GluI	GCNGC	9 cut(s)	169, 292, 347, 350, 388, 533, 654, 983, 1527
GsuI	CTGGAG	1 cut(s)	1629
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	808, 964, 1033
HapII	CCGG	5 cut(s)	254, 326, 343, 577, 701
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	2 cut(s)	9, 354
Hin1I	GRCGYC	1 cut(s)	257
Hin6I	GCGC	2 cut(s)	7, 352
HinP1I	GCGC	2 cut(s)	7, 352
HincII	GTYRAC	2 cut(s)	864, 955
HindII	GTYRAC	2 cut(s)	864, 955
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	5 cut(s)	398, 620, 635, 743, 802
HpaII	CCGG	5 cut(s)	254, 326, 343, 577, 701
HphI	GGTGA	2 cut(s)	283, 1202
Hpy166II	GTNNAC	6 cut(s)	310, 370, 689, 864, 955, 1064
Hpy188I	TCNGA	3 cut(s)	634, 1090, 1264
Hpy188III	TCNNGA	9 cut(s)	38, 545, 758, 764, 988, 1220, 1537, 1602, 1646
Hpy8I	GTNNAC	6 cut(s)	310, 370, 689, 864, 955, 1064
Hpy99I	CGWCG	4 cut(s)	199, 322, 413, 437
HpyAV	CCTTC	2 cut(s)	116, 473
HpyCH4III	ACNGT	3 cut(s)	798, 1152, 1214
HpyCH4IV	ACGT	3 cut(s)	204, 317, 1654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 230, 358, 880
HpyF3I	CTNAG	3 cut(s)	12, 330, 854
HpySE526I	ACGT	3 cut(s)	204, 317, 1654
Hsp92I	GRCGYC	1 cut(s)	257
HspAI	GCGC	2 cut(s)	7, 352
Ksp22I	TGATCA	3 cut(s)	760, 1069, 1080
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
LmnI	GCTCC	4 cut(s)	979, 1359, 1443, 1648
Lsp1109I	GCAGC	7 cut(s)	278, 358, 361, 519, 640, 994, 1513
LweI	GCATC	2 cut(s)	640, 1184
MaeI	CTAG	2 cut(s)	675, 1146
MaeII	ACGT	3 cut(s)	204, 317, 1654
MaeIII	GTNAC	2 cut(s)	929, 1372
MalI	GATC	8 cut(s)	215, 549, 762, 1045, 1071, 1082, 1143, 1194
MboI	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
MboII	GAAGA	4 cut(s)	374, 518, 1027, 1044
MfeI	CAATTG	1 cut(s)	1461
MhlI	GDGCHC	2 cut(s)	312, 451
MlsI	TGGCCA	1 cut(s)	1033
MluCI	AATT	9 cut(s)	117, 248, 610, 628, 1137, 1157, 1258, 1331, 1461
MluNI	TGGCCA	1 cut(s)	1033
MlyI	GAGTC	2 cut(s)	392, 811
MmeI	TCCRAC	2 cut(s)	462, 620
Mox20I	TGGCCA	1 cut(s)	1033
Mph1103I	ATGCAT	3 cut(s)	522, 816, 913
MroXI	GAANNNNTTC	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	1033
MseI	TTAA	4 cut(s)	20, 1233, 1434, 1520
MslI	CAYNNNNRTG	2 cut(s)	1320, 1633
Msp20I	TGGCCA	1 cut(s)	1033
MspA1I	CMGCKG	2 cut(s)	168, 617
MspI	CCGG	5 cut(s)	254, 326, 343, 577, 701
MspR9I	CCNGG	4 cut(s)	343, 426, 1286, 1585
MunI	CAATTG	1 cut(s)	1461
Mva1269I	GAATGC	2 cut(s)	224, 1256
MvaI	CCWGG	3 cut(s)	426, 1286, 1585
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	13, 230, 358, 880
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	1028
NdeII	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
NlaIV	GGNNCC	3 cut(s)	1026, 1183, 1644
NsbI	TGCGCA	1 cut(s)	8
NsiI	ATGCAT	3 cut(s)	522, 816, 913
NspI	RCATGY	4 cut(s)	788, 911, 1270, 1347
PagI	TCATGA	2 cut(s)	544, 757
PctI	GAATGC	2 cut(s)	224, 1256
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	620, 635, 743
PkrI	GCNGC	9 cut(s)	170, 293, 348, 351, 389, 534, 655, 984, 1528
PleI	GAGTC	2 cut(s)	392, 810
PpsI	GAGTC	2 cut(s)	392, 810
Ppu21I	YACGTR	2 cut(s)	205, 1655
PpuMI	RGGWCCY	1 cut(s)	1182
Psp5II	RGGWCCY	1 cut(s)	1182
Psp6I	CCWGG	3 cut(s)	424, 1284, 1583
PspGI	CCWGG	3 cut(s)	424, 1284, 1583
PspN4I	GGNNCC	3 cut(s)	1026, 1183, 1644
PspPI	GGNCC	3 cut(s)	807, 1025, 1182
PspPPI	RGGWCCY	1 cut(s)	1182
PstNI	CAGNNNCTG	1 cut(s)	1622
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	7 cut(s)	585, 783, 1207, 1329, 1348, 1653, 1657
RsaNI	GTAC	7 cut(s)	584, 782, 1206, 1328, 1347, 1652, 1656
RseI	CAYNNNNRTG	2 cut(s)	1320, 1633
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	4 cut(s)	20, 1233, 1434, 1520
SatI	GCNGC	9 cut(s)	169, 292, 347, 350, 388, 533, 654, 983, 1527
Sau3AI	GATC	8 cut(s)	213, 547, 760, 1043, 1069, 1080, 1141, 1192
Sau96I	GGNCC	3 cut(s)	807, 1025, 1182
SchI	GAGTC	2 cut(s)	392, 811
ScrFI	CCNGG	4 cut(s)	343, 426, 1286, 1585
SduI	GDGCHC	2 cut(s)	312, 451
SfaNI	GCATC	2 cut(s)	640, 1184
SfcI	CTRYAG	1 cut(s)	1213
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	1025, 1182
SmiMI	CAYNNNNRTG	2 cut(s)	1320, 1633
SmlI	CTYRAG	3 cut(s)	392, 986, 1451
SmoI	CTYRAG	3 cut(s)	392, 986, 1451
SnaBI	TACGTA	1 cut(s)	1655
Sse9I	AATT	9 cut(s)	117, 248, 610, 628, 1137, 1157, 1258, 1331, 1461
SsiI	CCGC	4 cut(s)	166, 168, 294, 388
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	2 cut(s)	675, 1146
StyD4I	CCNGG	4 cut(s)	341, 424, 1284, 1583
StyI	CCWWGG	3 cut(s)	936, 1028, 1473
TaaI	ACNGT	3 cut(s)	798, 1152, 1214
TaiI	ACGT	3 cut(s)	207, 320, 1657
TaqI	TCGA	4 cut(s)	432, 570, 1042, 1312
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	9 cut(s)	117, 248, 610, 628, 1137, 1157, 1258, 1331, 1461
TatI	WGTACW	2 cut(s)	781, 1327
TauI	GCSGC	2 cut(s)	171, 390
TfiI	GAWTC	3 cut(s)	620, 635, 743
Tru1I	TTAA	4 cut(s)	20, 1233, 1434, 1520
Tru9I	TTAA	4 cut(s)	20, 1233, 1434, 1520
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	7 cut(s)	291, 346, 349, 532, 653, 982, 1526
TspDTI	ATGAA	6 cut(s)	581, 786, 831, 1324, 1560, 1566
TspGWI	ACGGA	3 cut(s)	183, 250, 992
TspRI	CASTG	1 cut(s)	312
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	1025, 1182
XapI	RAATTY	3 cut(s)	610, 1157, 1258
XceI	RCATGY	4 cut(s)	788, 911, 1270, 1347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1537
XmiI	GTMKAC	2 cut(s)	369, 688
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	2 cut(s)	675, 1146
Zsp2I	ATGCAT	3 cut(s)	522, 816, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.