Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006400.1

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Reverse (-)

2024 .. 4910

Gene Structure 2887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006400.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgcatgaaatcactttctcaacagatgacaagccaaaacttctcagtcagttgacttccttgcttgcagagcttgggctgaatatccaagaagcacatgcattttccacgctggatggttactccttggatgtctttgttgttgacggctggccttacgaggaaacggagcagctcaagactgctttggaaaaggaagttttgaagattgagggaccatggccaatacatcgatcatcatcttctggtagtgaacatgatcaagtagtgatcaaatctgaacctaatcaactgattatacccaatgatgggactgatgtatgggaaattgatcctagacagttgaaatttggaaacaaagttgcatctgggtcctgtggtgatctatacaaaggtacttactgtagtcaagaagtggcgattaaagtcctcaaacctgaatgcgtaagttcagacatgcaaaaagattttgcccaggaagtctttattatgaggaaagttcgacataagaatgttgtacaattcattggtgcatgtaccaagctcccaagcctgtgtattgtaacagaatatatgtctggtggaagtgtgtatgactacttacataaacaaaagggtgtttttaagctcccatccttgctcaaggtagcaattgatgttgccaagggaatgacctacttgcaccagaataacataatccacagggatttaaaagctgccaatctcttgatggatgaaaatgaagttgtcaaggttgctgattttggggttgccagggtcaagtctcaatcaggagtaatgacagcagaaactgggacatataggtggatggctccagaggtaatagaacacaagccatatgatcacaaagctgatgtatttagctttgcacttgtgttatgggagttgctgactggaaagcttccatatgaatacttgaccccaccgtggccaagtagagagcatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

323

Amino Acids

36.41

Weight (kDa)

5.6

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	221, 950
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	3 cut(s)	397, 519, 538
AfiI	CCNNNNNNNGG	3 cut(s)	308, 309, 948
AgsI	TTSAA	2 cut(s)	205, 346
AjnI	CCWGG	2 cut(s)	474, 773
AluBI	AGCT	8 cut(s)	73, 175, 544, 628, 716, 872, 885, 922
AluI	AGCT	8 cut(s)	73, 175, 544, 628, 716, 872, 885, 922
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	812
AoxI	GGCC	3 cut(s)	152, 221, 950
ApeKI	GCWGC	2 cut(s)	172, 716
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	215, 372
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	215, 372
BalI	TGGCCA	2 cut(s)	223, 952
BbvI	GCAGC	2 cut(s)	184, 703
BccI	CCATC	5 cut(s)	110, 302, 640, 724, 823
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	476, 775
BclI	TGATCA	3 cut(s)	259, 270, 862
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	2 cut(s)	173, 717
BlsI	GCNGC	2 cut(s)	174, 718
Bme1390I	CCNGG	2 cut(s)	476, 775
Bme18I	GGWCC	2 cut(s)	215, 372
BmgT120I	GGNCC	2 cut(s)	215, 372
BmiI	GGNNCC	3 cut(s)	216, 373, 834
BmrFI	CCNGG	2 cut(s)	476, 775
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	819
BpuEI	CTTGAG	2 cut(s)	161, 626
Bsa29I	ATCGAT	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	238
BsaJI	CCNNGG	6 cut(s)	126, 218, 474, 663, 774, 947
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 309, 948
Bse1I	ACTGG	2 cut(s)	817, 919
Bse8I	GATNNNNATC	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	476, 775
BseCI	ATCGAT	1 cut(s)	232
BseDI	CCNNGG	6 cut(s)	126, 218, 474, 663, 774, 947
BseGI	GGATG	5 cut(s)	121, 136, 632, 739, 834
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	308, 309, 948
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	2 cut(s)	817, 919
BseXI	GCAGC	2 cut(s)	184, 703
BshFI	GGCC	3 cut(s)	154, 223, 952
BshVI	ATCGAT	1 cut(s)	232
BslFI	GGGAC	3 cut(s)	228, 325, 829
BslI	CCNNNNNNNGG	3 cut(s)	308, 309, 948
BsmAI	GTCTC	1 cut(s)	789
BsmFI	GGGAC	3 cut(s)	228, 325, 829
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	154, 223, 952
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
Bsp19I	CCATGG	1 cut(s)	218
BspANI	GGCC	3 cut(s)	154, 223, 952
BspCNI	CTCAG	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	216, 373, 834
BspPI	GGATC	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	817, 919
BssECI	CCNNGG	6 cut(s)	126, 218, 474, 663, 774, 947
BssMI	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
BssT1I	CCWWGG	3 cut(s)	126, 218, 663
Bst2UI	CCWGG	2 cut(s)	476, 775
Bst4CI	ACNGT	3 cut(s)	342, 404, 948
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	66, 152
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	2 cut(s)	218, 947
BstF5I	GGATG	5 cut(s)	121, 136, 632, 739, 834
BstKTI	GATC	6 cut(s)	236, 262, 273, 334, 385, 865
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	2 cut(s)	476, 775
BstNSI	RCATGY	3 cut(s)	101, 460, 537
BstSCI	CCNGG	2 cut(s)	474, 773
BstSFI	CTRYAG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	184, 703
Bsu15I	ATCGAT	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	154, 223, 952
BsuTUI	ATCGAT	1 cut(s)	232
BtgI	CCRYGG	2 cut(s)	218, 947
BtsCI	GGATG	5 cut(s)	121, 136, 632, 739, 834
Cac8I	GCNNGC	2 cut(s)	66, 152
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr13I	GGNCC	2 cut(s)	215, 372
ClaI	ATCGAT	1 cut(s)	232
Csp6I	GTAC	3 cut(s)	396, 518, 537
CviAII	CATG	7 cut(s)	5, 98, 219, 257, 457, 534, 965
CviQI	GTAC	3 cut(s)	396, 518, 537
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	6 cut(s)	235, 261, 272, 333, 384, 864
DpnII	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
DraI	TTTAAA	1 cut(s)	711
EaeI	YGGCCR	2 cut(s)	221, 950
Eco130I	CCWWGG	3 cut(s)	126, 218, 663
Eco47I	GGWCC	2 cut(s)	215, 372
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	474, 773
EcoT14I	CCWWGG	3 cut(s)	126, 218, 663
EcoT22I	ATGCAT	2 cut(s)	6, 103
ErhI	CCWWGG	3 cut(s)	126, 218, 663
FaeI	CATG	7 cut(s)	8, 101, 222, 260, 460, 537, 968
FaqI	GGGAC	3 cut(s)	228, 325, 829
FatI	CATG	7 cut(s)	4, 97, 218, 256, 456, 533, 964
FauNDI	CATATG	2 cut(s)	859, 928
FbaI	TGATCA	3 cut(s)	259, 270, 862
Fnu4HI	GCNGC	2 cut(s)	173, 717
FokI	GGATG	5 cut(s)	128, 143, 619, 746, 841
Fsp4HI	GCNGC	2 cut(s)	173, 717
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	2 cut(s)	173, 717
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	3 cut(s)	154, 223, 952
Hin1II	CATG	7 cut(s)	8, 101, 222, 260, 460, 537, 968
HincII	GTYRAC	2 cut(s)	54, 145
HindII	GTYRAC	2 cut(s)	54, 145
HindIII	AAGCTT	1 cut(s)	920
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	54, 145, 254
Hpy188I	TCNGA	2 cut(s)	280, 454
Hpy188III	TCNNGA	5 cut(s)	178, 410, 727, 792, 836
Hpy8I	GTNNAC	3 cut(s)	54, 145, 254
HpyCH4III	ACNGT	3 cut(s)	342, 404, 948
HpyCH4V	TGCA	8 cut(s)	4, 68, 101, 365, 460, 533, 682, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	7 cut(s)	8, 101, 222, 260, 460, 537, 968
Ksp22I	TGATCA	3 cut(s)	259, 270, 862
Kzo9I	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
LmnI	GCTCC	4 cut(s)	169, 549, 633, 838
Lsp1109I	GCAGC	2 cut(s)	184, 703
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	119, 562
MalI	GATC	6 cut(s)	235, 261, 272, 333, 384, 864
MboI	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
MboII	GAAGA	2 cut(s)	217, 234
MfeI	CAATTG	1 cut(s)	651
MlsI	TGGCCA	2 cut(s)	223, 952
MluCI	AATT	4 cut(s)	327, 347, 521, 651
MluNI	TGGCCA	2 cut(s)	223, 952
MnlI	CCTC	5 cut(s)	154, 205, 440, 486, 832
Mox20I	TGGCCA	2 cut(s)	223, 952
Mph1103I	ATGCAT	2 cut(s)	6, 103
MscI	TGGCCA	2 cut(s)	223, 952
MseI	TTAA	3 cut(s)	423, 624, 710
MslI	CAYNNNNRTG	2 cut(s)	510, 823
Msp20I	TGGCCA	2 cut(s)	223, 952
MspR9I	CCNGG	2 cut(s)	476, 775
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	2 cut(s)	476, 775
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	218
NdeI	CATATG	2 cut(s)	859, 928
NdeII	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
NlaIII	CATG	7 cut(s)	8, 101, 222, 260, 460, 537, 968
NlaIV	GGNNCC	3 cut(s)	216, 373, 834
NsiI	ATGCAT	2 cut(s)	6, 103
NspI	RCATGY	3 cut(s)	101, 460, 537
PctI	GAATGC	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	174, 718
PpuMI	RGGWCCY	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	474, 773
PspGI	CCWGG	2 cut(s)	474, 773
PspN4I	GGNNCC	3 cut(s)	216, 373, 834
PspPI	GGNCC	2 cut(s)	215, 372
PspPPI	RGGWCCY	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	812
RsaI	GTAC	3 cut(s)	397, 519, 538
RsaNI	GTAC	3 cut(s)	396, 518, 537
RseI	CAYNNNNRTG	2 cut(s)	510, 823
SaqAI	TTAA	3 cut(s)	423, 624, 710
SatI	GCNGC	2 cut(s)	173, 717
Sau3AI	GATC	6 cut(s)	233, 259, 270, 331, 382, 862
Sau96I	GGNCC	2 cut(s)	215, 372
ScrFI	CCNGG	2 cut(s)	476, 775
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	1 cut(s)	403
SinI	GGWCC	2 cut(s)	215, 372
SmiMI	CAYNNNNRTG	2 cut(s)	510, 823
SmlI	CTYRAG	2 cut(s)	176, 641
SmoI	CTYRAG	2 cut(s)	176, 641
Sse9I	AATT	4 cut(s)	327, 347, 521, 651
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	474, 773
StyI	CCWWGG	3 cut(s)	126, 218, 663
TaaI	ACNGT	3 cut(s)	342, 404, 948
TaqI	TCGA	2 cut(s)	232, 502
TasI	AATT	4 cut(s)	327, 347, 521, 651
TatI	WGTACW	1 cut(s)	517
Tru1I	TTAA	3 cut(s)	423, 624, 710
Tru9I	TTAA	3 cut(s)	423, 624, 710
TseI	GCWGC	2 cut(s)	172, 716
TspDTI	ATGAA	5 cut(s)	21, 514, 750, 756, 945
TspGWI	ACGGA	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	215, 372
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	3 cut(s)	101, 460, 537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	2 cut(s)	6, 103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.