Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Reverse (-)

44269679 .. 44275283

Gene Structure 5605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG236300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGTGATGGACGACAACGAGAGCTGCGGGAGTAGAGCAGTGCACGACACGTCGTCTCAGGCTCAGTCCCACTCCCGGCAACAGCGCCAGAAGCTTCAGGTCTACAATGAGGTTCTTCGCCGCCTCAAGGATTCTCAAAACGACGAGGCTATTCTCCCTGGCTTCGACGATGAGCTTTGGGCTCACTTCAATCGCCTTCCCACTCGGTATGCGTTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTTATGCATAAAAGGTTGCTGCATTTGGCTCATGATCCTGCTCAAAGACCAGCCATCGAAATCCGGCTCGTACAGGTTCATCCAACTTCAAATGGGAATTCGGCTGATTCTGTCAATTCAGATTCTCTGGGTAAAGATGCTGCCCAAAGTTCAAAGTTATCTAGCAGACAAAGTATACATCCACCTCCGGCATTTGGCTCATCGCCCAACCTTGAAGCCCTTGCACTTGAATCAAATAAATCTCATGATCAAGATGACGAACATTCTGTACATGCCAACACACAGTTGAGTCGGCCCATGCATGAAATCACTTTCTCAACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCAGAGCTTGGGCTGAATATCCAAGAAGCACATGCATTTTCCACGCTGGATGGTTACTCCTTGGATGTCTTTGTTGTTGACGGCTGGCCTTACGAGGAAACGGAGCAGCTCAAGACTGCTTTGGAAAAGGAAGTTTTGAAGATTGAGGGACCATGGCCGATACATCGATCATCATCTTCTGGTAGTGAACATGATCAAGTAGTGATCAAATCTGAACCTAATCAACTGATTATACCCAATGATGGGACTGATGTATGGGAAATTGATCCTAGACAGTTGAAATTTGGAAACAAAGTTGCATCTGGGTCCTGTGGTGATCTATACAAAGGTACTTACTGTAGTCAAGAAGTGGCAATTAAAGTCCTCAAACCTGAATGCGTAAGTTCAGACATGCAAAAAGATTTTGCCCAGGAAGTCTTTATTATGAGGAAAGTTCGACATAAGAATGTTGTACAATTCATTGGTGCATGTACCAAGCTCCCAAGCCTGTGTATTGTAACAGAATATATGTCTGGTGGAAGTGTGTATGACTACTTACATAAACAAAAGGGTGTTTTTAAGCTCCCATCCTTGCTCAAGGTAGCAATTGATGTTGCCAAGGGAATGACCTACTTGCACCAGAATAACATAATCCACAGGGATTTAAAAGCTGCCAATCTCTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTTGGGGTTGCCAGGGTCAAGTCTCAATCAGGAGTAATGACAGCAGAAACTGGGACATATAGGTGGATGGCTCCAGAGGTAATAGAACACAAGCCATATGATCACAAAGCTGATGTATTTAGCTTTGCACTTGTGTTATGGGAGTTGCTGACTGGAAAGCTTCCATATGAATACTTGACCCCACTACAAGCTGCTGTTGGAGTGGTCCAAAAGGGCTTACGGCCAACCATTCCAAAGCAAACTCATCCAAAGCTTACTGAGTTACTTGAGAAATGCTGGCAACAAGATCCAGCATTAAGACCCGACTTCTCAGAAATCATAGAGATGCTGCAGCCATTAGCCAAGGAGATTGGTGATGAAGGAGAAGAACGACGCAAGTCATCTGGAGGATTTCTGTCCGTACTTAGACGAGGTCATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

575

Amino Acids

64.46

Weight (kDa)

5.9

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	184 - 231	9.9e-07	ACT domain
PK_Tyr_Ser-Thr	PF07714	296 - 545	3e-73	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	299 - 543	1.7e-57	Protein kinase domain
Pkinase_fungal	PF17667	392 - 481	3e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	102, 421
AciI	CCGC	2 cut(s)	27, 121
AclWI	GGATC	3 cut(s)	275, 869, 1586
AcoI	YGGCCR	2 cut(s)	764, 1526
AcsI	RAATTY	2 cut(s)	343, 890
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	6 cut(s)	318, 516, 940, 1062, 1081, 1707
AfiI	CCNNNNNNNGG	5 cut(s)	75, 127, 440, 851, 852
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	7 cut(s)	190, 336, 399, 461, 476, 748, 889
AhdI	GACNNNNNGTC	1 cut(s)	52
AjiI	CACGTC	1 cut(s)	51
AjnI	CCWGG	3 cut(s)	157, 1017, 1316
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	60, 1332
Alw44I	GTGCAC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	275, 869, 1586
AlwNI	CAGNNNCTG	1 cut(s)	1355
AoxI	GGCC	4 cut(s)	539, 695, 764, 1526
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	8 cut(s)	24, 265, 386, 715, 1259, 1496, 1633, 1636
ApoI	RAATTY	2 cut(s)	343, 890
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	4 cut(s)	540, 758, 915, 1510
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	16, 935, 1670
AvaII	GGWCC	3 cut(s)	758, 915, 1510
BaeGI	GKGCMC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	8 cut(s)	11, 252, 373, 727, 1246, 1483, 1620, 1648
BccI	CCATC	6 cut(s)	308, 653, 845, 1183, 1267, 1366
BceAI	ACGGC	2 cut(s)	706, 1541
BciT130I	CCWGG	3 cut(s)	159, 1019, 1318
BclI	TGATCA	4 cut(s)	493, 802, 813, 1405
BcnI	CCSGG	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	60, 1332
BfaI	CTAG	2 cut(s)	408, 879
BfmI	CTRYAG	2 cut(s)	946, 1634
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	9 cut(s)	25, 121, 266, 387, 716, 1260, 1497, 1634, 1637
BlsI	GCNGC	9 cut(s)	26, 122, 267, 388, 717, 1261, 1498, 1635, 1638
Bme1390I	CCNGG	4 cut(s)	76, 159, 1019, 1318
Bme18I	GGWCC	3 cut(s)	758, 915, 1510
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	51
BmgT120I	GGNCC	4 cut(s)	540, 758, 915, 1510
BmiI	GGNNCC	3 cut(s)	759, 916, 1377
BmrFI	CCNGG	4 cut(s)	76, 159, 1019, 1318
BmrI	ACTGGG	1 cut(s)	1365
BmsI	GCATC	3 cut(s)	373, 917, 1620
BmuI	ACTGGG	1 cut(s)	1365
BoxI	GACNNNNGTC	1 cut(s)	1681
BpmI	CTGGAG	2 cut(s)	1362, 1710
BpuEI	CTTGAG	4 cut(s)	110, 704, 1169, 1592
BpuMI	CCSGG	1 cut(s)	76
Bsa29I	ATCGAT	1 cut(s)	775
BsaBI	GATNNNNATC	1 cut(s)	781
BsaJI	CCNNGG	7 cut(s)	157, 669, 761, 1017, 1206, 1317, 1647
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 127, 440, 851, 852
Bse1I	ACTGG	2 cut(s)	1360, 1462
Bse8I	GATNNNNATC	1 cut(s)	781
BseBI	CCWGG	3 cut(s)	159, 1019, 1318
BseCI	ATCGAT	1 cut(s)	775
BseDI	CCNNGG	7 cut(s)	157, 669, 761, 1017, 1206, 1317, 1647
BseGI	GGATG	9 cut(s)	223, 325, 424, 664, 679, 1175, 1282, 1377, 1549
BseJI	GATNNNNATC	1 cut(s)	781
BseLI	CCNNNNNNNGG	5 cut(s)	75, 127, 440, 851, 852
BseMII	CTCAG	5 cut(s)	71, 77, 601, 1554, 1629
BseNI	ACTGG	2 cut(s)	1360, 1462
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	8 cut(s)	11, 252, 373, 727, 1246, 1483, 1620, 1648
BshFI	GGCC	4 cut(s)	541, 697, 766, 1528
BshVI	ATCGAT	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	76, 310, 434
BslFI	GGGAC	4 cut(s)	52, 771, 868, 1372
BslI	CCNNNNNNNGG	5 cut(s)	75, 127, 440, 851, 852
BsmAI	GTCTC	2 cut(s)	60, 1332
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	4 cut(s)	52, 771, 868, 1372
BsmI	GAATGC	1 cut(s)	989
BsnI	GGCC	4 cut(s)	541, 697, 766, 1528
Bsp1286I	GDGCHC	2 cut(s)	45, 184
Bsp1407I	TGTACA	2 cut(s)	514, 1060
Bsp143I	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
Bsp19I	CCATGG	1 cut(s)	761
BspACI	CCGC	2 cut(s)	27, 121
BspANI	GGCC	4 cut(s)	541, 697, 766, 1528
BspCNI	CTCAG	5 cut(s)	70, 76, 600, 1555, 1628
BspDI	ATCGAT	1 cut(s)	775
BspHI	TCATGA	2 cut(s)	277, 490
BspLI	GGNNCC	3 cut(s)	759, 916, 1377
BspMAI	CTGCAG	1 cut(s)	1638
BspPI	GGATC	3 cut(s)	275, 869, 1586
BsrGI	TGTACA	2 cut(s)	514, 1060
BsrI	ACTGG	2 cut(s)	1360, 1462
BssECI	CCNNGG	7 cut(s)	157, 669, 761, 1017, 1206, 1317, 1647
BssMI	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
BssNAI	GTATAC	1 cut(s)	422
BssT1I	CCWWGG	4 cut(s)	669, 761, 1206, 1647
Bst1107I	GTATAC	1 cut(s)	422
Bst2UI	CCWGG	3 cut(s)	159, 1019, 1318
Bst4CI	ACNGT	3 cut(s)	531, 885, 947
BstAUI	TGTACA	2 cut(s)	514, 1060
BstC8I	GCNNGC	3 cut(s)	609, 695, 1583
BstDEI	CTNAG	6 cut(s)	57, 63, 587, 1563, 1615, 1709
BstDSI	CCRYGG	1 cut(s)	761
BstF5I	GGATG	9 cut(s)	223, 325, 424, 664, 679, 1175, 1282, 1377, 1549
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	9 cut(s)	283, 496, 779, 805, 816, 877, 928, 1408, 1594
BstMAI	GTCTC	2 cut(s)	60, 1332
BstMBI	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 613
BstNI	CCWGG	3 cut(s)	159, 1019, 1318
BstNSI	RCATGY	4 cut(s)	521, 644, 1003, 1080
BstPAI	GACNNNNGTC	1 cut(s)	1681
BstSCI	CCNGG	4 cut(s)	74, 157, 1017, 1316
BstSFI	CTRYAG	2 cut(s)	946, 1634
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	8 cut(s)	11, 252, 373, 727, 1246, 1483, 1620, 1648
BstX2I	RGATCY	1 cut(s)	1591
BstYI	RGATCY	1 cut(s)	1591
BstZ17I	GTATAC	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	541, 697, 766, 1528
BsuTUI	ATCGAT	1 cut(s)	775
BtgI	CCRYGG	1 cut(s)	761
BtgZI	GCGATG	1 cut(s)	432
BtrI	CACGTC	1 cut(s)	51
BtsCI	GGATG	9 cut(s)	223, 325, 424, 664, 679, 1175, 1282, 1377, 1549
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	3 cut(s)	609, 695, 1583
CaiI	CAGNNNCTG	1 cut(s)	1355
CciI	TCATGA	2 cut(s)	277, 490
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	4 cut(s)	540, 758, 915, 1510
ClaI	ATCGAT	1 cut(s)	775
CseI	GACGC	1 cut(s)	1686
Csp6I	GTAC	6 cut(s)	317, 515, 939, 1061, 1080, 1706
CviQI	GTAC	6 cut(s)	317, 515, 939, 1061, 1080, 1706
DdeI	CTNAG	6 cut(s)	57, 63, 587, 1563, 1615, 1709
DpnI	GATC	9 cut(s)	282, 495, 778, 804, 815, 876, 927, 1407, 1593
DpnII	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
DraI	TTTAAA	1 cut(s)	1254
DriI	GACNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	2 cut(s)	764, 1526
Eam1105I	GACNNNNNGTC	1 cut(s)	52
Eco130I	CCWWGG	4 cut(s)	669, 761, 1206, 1647
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	758, 915, 1510
Eco57I	CTGAAG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	3 cut(s)	157, 1017, 1316
EcoT14I	CCWWGG	4 cut(s)	669, 761, 1206, 1647
EcoT22I	ATGCAT	3 cut(s)	255, 549, 646
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	4 cut(s)	669, 761, 1206, 1647
Esp3I	CGTCTC	1 cut(s)	60
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	4 cut(s)	52, 771, 868, 1372
FauI	CCCGC	1 cut(s)	20
FauNDI	CATATG	2 cut(s)	1402, 1471
FbaI	TGATCA	4 cut(s)	493, 802, 813, 1405
FblI	GTMKAC	2 cut(s)	102, 421
Fnu4HI	GCNGC	9 cut(s)	25, 121, 266, 387, 716, 1260, 1497, 1634, 1637
FokI	GGATG	9 cut(s)	230, 312, 411, 671, 686, 1162, 1289, 1384, 1536
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	9 cut(s)	25, 121, 266, 387, 716, 1260, 1497, 1634, 1637
FspBI	CTAG	2 cut(s)	408, 879
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	9 cut(s)	25, 121, 266, 387, 716, 1260, 1497, 1634, 1637
GsuI	CTGGAG	2 cut(s)	1362, 1710
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	541, 697, 766, 1528
HapII	CCGG	3 cut(s)	76, 310, 434
HgaI	GACGC	1 cut(s)	1686
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	2 cut(s)	597, 688
HindII	GTYRAC	2 cut(s)	597, 688
HindIII	AAGCTT	3 cut(s)	92, 1463, 1556
HinfI	GANTC	5 cut(s)	131, 353, 368, 476, 535
HpaII	CCGG	3 cut(s)	76, 310, 434
HphI	GGTGA	3 cut(s)	16, 935, 1670
Hpy166II	GTNNAC	6 cut(s)	43, 103, 422, 597, 688, 797
Hpy188I	TCNGA	4 cut(s)	367, 823, 997, 1618
Hpy188III	TCNNGA	9 cut(s)	278, 491, 497, 721, 953, 1270, 1335, 1379, 1689
Hpy8I	GTNNAC	6 cut(s)	43, 103, 422, 597, 688, 797
Hpy99I	CGWCG	4 cut(s)	55, 146, 170, 1680
HpyAV	CCTTC	2 cut(s)	206, 1658
HpyCH4III	ACNGT	3 cut(s)	531, 885, 947
HpyCH4IV	ACGT	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 613
HpyF3I	CTNAG	6 cut(s)	57, 63, 587, 1563, 1615, 1709
HpySE526I	ACGT	1 cut(s)	50
HspAI	GCGC	1 cut(s)	85
Ksp22I	TGATCA	4 cut(s)	493, 802, 813, 1405
Kzo9I	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
LmnI	GCTCC	4 cut(s)	712, 1092, 1176, 1381
Lsp1109I	GCAGC	8 cut(s)	11, 252, 373, 727, 1246, 1483, 1620, 1648
LweI	GCATC	3 cut(s)	373, 917, 1620
MaeI	CTAG	2 cut(s)	408, 879
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	3 cut(s)	662, 1105, 1566
MalI	GATC	9 cut(s)	282, 495, 778, 804, 815, 876, 927, 1407, 1593
MboI	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
MboII	GAAGA	5 cut(s)	107, 251, 760, 777, 1682
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	1 cut(s)	1591
MhlI	GDGCHC	2 cut(s)	45, 184
MluCI	AATT	7 cut(s)	343, 361, 870, 890, 963, 1064, 1194
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	3 cut(s)	195, 353, 1483
Mph1103I	ATGCAT	3 cut(s)	255, 549, 646
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	4 cut(s)	966, 1167, 1253, 1601
MslI	CAYNNNNRTG	3 cut(s)	1053, 1366, 1628
MspI	CCGG	3 cut(s)	76, 310, 434
MspR9I	CCNGG	4 cut(s)	76, 159, 1019, 1318
MunI	CAATTG	1 cut(s)	1194
Mva1269I	GAATGC	1 cut(s)	989
MvaI	CCWGG	3 cut(s)	159, 1019, 1318
MwoI	GCNNNNNNNGC	2 cut(s)	91, 613
NciI	CCSGG	1 cut(s)	76
NcoI	CCATGG	1 cut(s)	761
NdeI	CATATG	2 cut(s)	1402, 1471
NdeII	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
NlaIV	GGNNCC	3 cut(s)	759, 916, 1377
NsiI	ATGCAT	3 cut(s)	255, 549, 646
NspI	RCATGY	4 cut(s)	521, 644, 1003, 1080
PagI	TCATGA	2 cut(s)	277, 490
PctI	GAATGC	1 cut(s)	989
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	131, 353, 368, 476
PflFI	GACNNNGTC	1 cut(s)	1716
PkrI	GCNGC	9 cut(s)	26, 122, 267, 388, 717, 1261, 1498, 1635, 1638
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PpuMI	RGGWCCY	1 cut(s)	915
PshAI	GACNNNNGTC	1 cut(s)	1681
Psp5II	RGGWCCY	1 cut(s)	915
Psp6I	CCWGG	3 cut(s)	157, 1017, 1316
PspGI	CCWGG	3 cut(s)	157, 1017, 1316
PspN4I	GGNNCC	3 cut(s)	759, 916, 1377
PspPI	GGNCC	4 cut(s)	540, 758, 915, 1510
PspPPI	RGGWCCY	1 cut(s)	915
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PstI	CTGCAG	1 cut(s)	1638
PstNI	CAGNNNCTG	1 cut(s)	1355
PsuI	RGATCY	1 cut(s)	1591
PsyI	GACNNNGTC	1 cut(s)	1716
RsaI	GTAC	6 cut(s)	318, 516, 940, 1062, 1081, 1707
RsaNI	GTAC	6 cut(s)	317, 515, 939, 1061, 1080, 1706
RseI	CAYNNNNRTG	3 cut(s)	1053, 1366, 1628
SaqAI	TTAA	4 cut(s)	966, 1167, 1253, 1601
SatI	GCNGC	9 cut(s)	25, 121, 266, 387, 716, 1260, 1497, 1634, 1637
Sau3AI	GATC	9 cut(s)	280, 493, 776, 802, 813, 874, 925, 1405, 1591
Sau96I	GGNCC	4 cut(s)	540, 758, 915, 1510
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	4 cut(s)	76, 159, 1019, 1318
SduI	GDGCHC	2 cut(s)	45, 184
SfaNI	GCATC	3 cut(s)	373, 917, 1620
SfcI	CTRYAG	2 cut(s)	946, 1634
SinI	GGWCC	3 cut(s)	758, 915, 1510
SmiMI	CAYNNNNRTG	3 cut(s)	1053, 1366, 1628
SmlI	CTYRAG	4 cut(s)	125, 719, 1184, 1571
SmoI	CTYRAG	4 cut(s)	125, 719, 1184, 1571
Sse9I	AATT	7 cut(s)	343, 361, 870, 890, 963, 1064, 1194
SsiI	CCGC	2 cut(s)	27, 121
SspMI	CTAG	2 cut(s)	408, 879
StyD4I	CCNGG	4 cut(s)	74, 157, 1017, 1316
StyI	CCWWGG	4 cut(s)	669, 761, 1206, 1647
TaaI	ACNGT	3 cut(s)	531, 885, 947
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	4 cut(s)	165, 303, 775, 1045
TasI	AATT	7 cut(s)	343, 361, 870, 890, 963, 1064, 1194
TatI	WGTACW	2 cut(s)	514, 1060
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	4 cut(s)	131, 353, 368, 476
Tru1I	TTAA	4 cut(s)	966, 1167, 1253, 1601
Tru9I	TTAA	4 cut(s)	966, 1167, 1253, 1601
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	8 cut(s)	24, 265, 386, 715, 1259, 1496, 1633, 1636
TspDTI	ATGAA	7 cut(s)	314, 564, 1057, 1293, 1299, 1488, 1677
TspGWI	ACGGA	2 cut(s)	725, 1693
TspRI	CASTG	1 cut(s)	45
Tth111I	GACNNNGTC	1 cut(s)	1716
VneI	GTGCAC	1 cut(s)	41
VpaK11BI	GGWCC	3 cut(s)	758, 915, 1510
XapI	RAATTY	2 cut(s)	343, 890
XceI	RCATGY	4 cut(s)	521, 644, 1003, 1080
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1270
XmiI	GTMKAC	2 cut(s)	102, 421
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	2 cut(s)	408, 879
Zsp2I	ATGCAT	3 cut(s)	255, 549, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.