Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Reverse (-)

16970035 .. 16971602

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0122800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAATTTTAAGGTGGTGATTGACAATAAAATTTCAGCCCCCAAGGAAATCTTGGGCATAGAGGACAAAAAGACCCAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTGAACCAGTAAAAGTGGTGGCACCTGTAGTTGAACCACTTGATTTGCTGGGTTTGAATGATCCTGTTCCAGATATTGCAGCATTAGATGAGAAGAATGCCATGGTTTTAGCTATTGTTCCAGTTTGTTGGGAATTGGCACTTGTTACAGCCCCAAGCTCAAATGAGAGTGCTACATCTGCTAGCAAACTGGCGGGAGGGTTGGACTTGCTTACACTAGACAGCCTATATGATGATGCAATTAGAAGAAACAATCAAAATGTAAGCTACAACCCATGGGAGAAGGCTCCCATGAATGGTGGCATGATGCAACAACCAATTCATGATCCCTTTTATGCATCCAACACAGTGGCCGCACCACCCTCTGTACAGATGGCCGCAATGGCCAACCAGCAGCAACAGGCCTTCATGTATCAACAACAGCAATCTTTGAATCCTTTTGGGAATCCTCATGGAGCATCTGCGCACCCCTATGGAGCAGGGATACAAGGCAGTCTTGCTATTAAAACTGTGGAACTTCAGGACTCGGGTTCGTTCTGCTATATTGGGTTACCTACTCATATTCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

227

Amino Acids

24.34

Weight (kDa)

4.61

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	133
AciI	CCGC	3 cut(s)	305, 465, 489
AclWI	GGATC	2 cut(s)	167, 431
AcoI	YGGCCR	3 cut(s)	462, 486, 495
AcsI	RAATTY	2 cut(s)	4, 30
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	146, 169, 544
AjiI	CACGTC	1 cut(s)	92
AluBI	AGCT	3 cut(s)	224, 270, 378
AluI	AGCT	3 cut(s)	224, 270, 378
AlwI	GGATC	2 cut(s)	167, 431
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	4 cut(s)	462, 486, 495, 513
ApeKI	GCWGC	2 cut(s)	191, 505
ApoI	RAATTY	2 cut(s)	4, 30
AspLEI	GCGC	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	203, 517
BccI	CCATC	1 cut(s)	478
BciVI	GTATCC	1 cut(s)	588
BfaI	CTAG	2 cut(s)	294, 329
BfmI	CTRYAG	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	588
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	4 cut(s)	192, 465, 489, 506
BlsI	GCNGC	4 cut(s)	193, 466, 490, 507
BmeT110I	CYCGRG	1 cut(s)	637
BmgBI	CACGTC	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	135, 399
BmsI	GCATC	4 cut(s)	337, 408, 458, 578
BmtI	GCTAGC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	42, 213, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	3 cut(s)	119, 233, 306
Bse3DI	GCAATG	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	42, 213, 386
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	3 cut(s)	119, 233, 306
BseXI	GCAGC	2 cut(s)	203, 517
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	4 cut(s)	464, 488, 497, 515
BshNI	GGYRCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	637
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	4 cut(s)	464, 488, 497, 515
BsoBI	CYCGRG	1 cut(s)	637
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	172, 436
Bsp19I	CCATGG	2 cut(s)	213, 386
BspACI	CCGC	3 cut(s)	305, 465, 489
BspANI	GGCC	4 cut(s)	464, 488, 497, 515
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	135, 399
BspOI	GCTAGC	1 cut(s)	297
BspPI	GGATC	2 cut(s)	167, 431
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	478
BsrI	ACTGG	3 cut(s)	119, 233, 306
BssECI	CCNNGG	3 cut(s)	42, 213, 386
BssMI	GATC	2 cut(s)	172, 436
BssT1I	CCWWGG	3 cut(s)	42, 213, 386
Bst4CI	ACNGT	2 cut(s)	460, 622
BstAUI	TGTACA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	295
BstDSI	CCRYGG	2 cut(s)	213, 386
BstEII	GGTNACC	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	175, 439
BstMBI	GATC	2 cut(s)	172, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 494
BstPI	GGTNACC	1 cut(s)	660
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	203, 517
BstXI	CCANNNNNNTGG	2 cut(s)	240, 460
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	464, 488, 497, 515
BtgI	CCRYGG	2 cut(s)	213, 386
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	1 cut(s)	295
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	479
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	7 cut(s)	214, 387, 403, 415, 434, 520, 563
CviQI	GTAC	1 cut(s)	479
DpnI	GATC	2 cut(s)	174, 438
DpnII	GATC	2 cut(s)	172, 436
EaeI	YGGCCR	3 cut(s)	462, 486, 495
Eco130I	CCWWGG	3 cut(s)	42, 213, 386
Eco147I	AGGCCT	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	637
Eco91I	GGTNACC	1 cut(s)	660
EcoO65I	GGTNACC	1 cut(s)	660
EcoT14I	CCWWGG	3 cut(s)	42, 213, 386
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	3 cut(s)	42, 213, 386
FaeI	CATG	7 cut(s)	217, 390, 406, 418, 437, 523, 566
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 591, 623
FatI	CATG	7 cut(s)	213, 386, 402, 414, 433, 519, 562
FauI	CCCGC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	192, 465, 489, 506
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	4 cut(s)	192, 465, 489, 506
FspBI	CTAG	2 cut(s)	294, 329
FspI	TGCGCA	1 cut(s)	576
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	4 cut(s)	192, 465, 489, 506
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	464, 488, 497, 515
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	7 cut(s)	217, 390, 406, 418, 437, 523, 566
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	3 cut(s)	544, 556, 635
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	678
Hpy188III	TCNNGA	3 cut(s)	182, 434, 632
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	108, 388, 526
HpyCH4III	ACNGT	2 cut(s)	460, 622
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	191, 350, 421, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 494
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	7 cut(s)	217, 390, 406, 418, 437, 523, 566
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	2 cut(s)	172, 436
LmnI	GCTCC	3 cut(s)	403, 566, 587
Lsp1109I	GCAGC	2 cut(s)	203, 517
LweI	GCATC	4 cut(s)	337, 408, 458, 578
MaeI	CTAG	2 cut(s)	294, 329
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	256, 660
MalI	GATC	2 cut(s)	174, 438
MboI	GATC	2 cut(s)	172, 436
MboII	GAAGA	2 cut(s)	217, 369
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	5 cut(s)	4, 30, 245, 351, 429
MluNI	TGGCCA	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	629
MmeI	TCCRAC	2 cut(s)	294, 477
MnlI	CCTC	6 cut(s)	55, 79, 117, 302, 484, 570
Mox20I	TGGCCA	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	3 cut(s)	9, 615, 682
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	290, 494
NcoI	CCATGG	2 cut(s)	213, 386
NdeII	GATC	2 cut(s)	172, 436
NheI	GCTAGC	1 cut(s)	293
NlaIII	CATG	7 cut(s)	217, 390, 406, 418, 437, 523, 566
NlaIV	GGNNCC	2 cut(s)	135, 399
NsbI	TGCGCA	1 cut(s)	576
NsiI	ATGCAT	1 cut(s)	451
PagI	TCATGA	1 cut(s)	433
PceI	AGGCCT	1 cut(s)	515
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	544, 556
PkrI	GCNGC	4 cut(s)	193, 466, 490, 507
PleI	GAGTC	1 cut(s)	629
PpsI	GAGTC	1 cut(s)	629
PspEI	GGTNACC	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	135, 399
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	9, 615, 682
SatI	GCNGC	4 cut(s)	192, 465, 489, 506
Sau3AI	GATC	2 cut(s)	172, 436
SchI	GAGTC	1 cut(s)	629
SfaNI	GCATC	4 cut(s)	337, 408, 458, 578
SfcI	CTRYAG	1 cut(s)	138
SfiI	GGCCNNNNNGGCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	5 cut(s)	4, 30, 245, 351, 429
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	3 cut(s)	305, 465, 489
SspMI	CTAG	2 cut(s)	294, 329
StuI	AGGCCT	1 cut(s)	515
StyI	CCWWGG	3 cut(s)	42, 213, 386
TaaI	ACNGT	2 cut(s)	460, 622
TaiI	ACGT	1 cut(s)	94
TasI	AATT	5 cut(s)	4, 30, 245, 351, 429
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	2 cut(s)	467, 491
TfiI	GAWTC	2 cut(s)	544, 556
Tru1I	TTAA	3 cut(s)	9, 615, 682
Tru9I	TTAA	3 cut(s)	9, 615, 682
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	2 cut(s)	191, 505
TspDTI	ATGAA	4 cut(s)	17, 419, 422, 508
TspRI	CASTG	1 cut(s)	465
XapI	RAATTY	2 cut(s)	4, 30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	294, 329
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.