Rh6DG437800

Tyrosine kinase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001013
Physical Location & Seq
Forward (+)
61514836 .. 61521200
6365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG437800.1

Sequence Viewer

Length: 1362 bp
ATGGCGGAGGAAGACACGGAGAGTCGGTGTAGCATACCTGCGGGTTTTTCGCCGGCTTTGACCCGAAAGCAGAAACTGAAAGTGAATATCTACAATGAAATTCTGGTCCGGCTTAAGGACTCGGATGTCGCGGAGGCCCAACAGCCCGGTTTCGAAGATGAACTCTGGGCTCATTTCAATCGCCTCCCAACTAGGTATGCTTTGGATGTGAATGTGGAGAGGGCACAAGATGTTCTCATGCATAAAAGACTATTGCATGTGGCACATGACCCTGCCACTAGACCTGCAGTCGAAGTCCGTCTTGTGCAGGTTCATTCTTCTTCTAATTTAAGCTCATCCAGAAAAGAAGATACTCAGTGTTCTGGTTTTGCTGGCAAACAGAGTCATCCACCACCAGCTTTTGGTTTGTCAGAAGACCTTGAACTTGCTCTTGAAGCCAAGAAGTTACAAGTTCAACATGGGAATACCACTGTGAATGCCTTTTCAAGGTCGATGCATGAAATTACAATTTCAACTAATGACAAGCCCAAACTCCTCAGTGAGTTGACATCCTTATTATCTGACATCGGACTGAACATTCAAGAAGCACATGCTTTTTCTACAACAGATGGCTACTCCTTGGATGTCTTTGTCGTTGATGGTTGGGAATGTGAGGAAACTGAACGGCTTAGACAGGCACTGGCAAAAGAAATACTATGGAGTGAGAATCCTTGCTTGGATTATAATGTCGTCTCCCCTGTTCTGGGGCAAGACACTGGAATGAAGGTCATTGGTGATCATGTAAGCACATCCAGTGAAGAAAAAGATATCTGGGAAATTGAAGCAAGCCTATTGACATATGAAAGGAAAATTGCTTCTGGATCAAATGGTGATTTATATCAAGGTACTTTCTGTGGTCAAGATGTGGCCATTAAAGTTCTTAGCACTGAGCGCCTAAATGAAACCATGAGGGAGTTTACCCAAGAAGTCTCTATCATGAGAAAAGTTCGGCACAAGAATGTCGTTCAATTCATTGGGGCTTGCACTAAACCTCCTAACCTTTGCATAGTTACTGAATTTTTGTCTGGTGGAAGCATGTACGACTTTCTCCATAAGCAAAAGGGTTCTTTTTCACTTCAGTCCTTGCTCAAAGTTGCAGTTGATATTTCCAGGGGAATGAAATACTTGCACCAAAATAATATAATGCACAGGGACTTGAAAGCTGCTAATCTTTTGATGGATGGAAATGGAGTTGTGAAAGTAGCTGATTTTGGGATTGCTAGAGTACAGGCACAATCTGGTGTTATGACTGCAGAAACTGGCACCTACCGTTGGATGGCTCCAGAGGTCTGTGTTCTTCAGCTATGTATTGATGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MS_channel Pkinase_Tyr

Protein Analysis

453

Amino Acids

50.46

Weight (kDa)

5.52

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 279 - 444 5e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 280 - 443 1.3e-41 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AasI GACNNNNNNGTC 1 cut(s) 125
Acc36I ACCTGC 3 cut(s) 46, 292, 298
AccB1I GGYRCC 1 cut(s) 1301
AccB7I CCANNNNNTGG 1 cut(s) 401
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 5, 41, 131
AclWI GGATC 1 cut(s) 868
AcoI YGGCCR 1 cut(s) 906
AcsI RAATTY 2 cut(s) 99, 1055
AcuI CTGAAG 2 cut(s) 1100, 1322
AfaI GTAC 3 cut(s) 886, 1079, 1266
AfiI CCNNNNNNNGG 7 cut(s) 115, 401, 486, 742, 743, 1311, 1315
AflII CTTAAG 1 cut(s) 113
AhdI GACNNNNNGTC 1 cut(s) 287
AjnI CCWGG 1 cut(s) 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 5 cut(s) 333, 398, 1202, 1244, 1342
AluI AGCT 5 cut(s) 333, 398, 1202, 1244, 1342
Alw26I GTCTC 2 cut(s) 736, 973
AlwI GGATC 1 cut(s) 868
AlwNI CAGNNNCTG 3 cut(s) 76, 679, 1298
AoxI GGCC 2 cut(s) 135, 906
ApeKI GCWGC 1 cut(s) 1202
ApoI RAATTY 2 cut(s) 99, 1055
AspLEI GCGC 1 cut(s) 933
AspS9I GGNCC 2 cut(s) 106, 136
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 785, 881
AsuII TTCGAA 1 cut(s) 153
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 908
BanI GGYRCC 1 cut(s) 1301
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 2 cut(s) 18, 420
BbvI GCAGC 1 cut(s) 1189
BccI CCATC 5 cut(s) 602, 632, 1210, 1214, 1309
BceAI ACGGC 1 cut(s) 680
BciT130I CCWGG 1 cut(s) 1150
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 736, 973
BfaI CTAG 3 cut(s) 192, 279, 1260
BfmI CTRYAG 2 cut(s) 285, 1290
BfoI RGCGCY 1 cut(s) 934
BfrI CTTAAG 1 cut(s) 113
BfuAI ACCTGC 3 cut(s) 46, 292, 298
BisI GCNGC 1 cut(s) 1203
BlsI GCNGC 1 cut(s) 1204
Bme1390I CCNGG 2 cut(s) 147, 1150
Bme18I GGWCC 1 cut(s) 106
BmeRI GACNNNNNGTC 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 106, 136
BmiI GGNNCC 2 cut(s) 1303, 1320
BmrFI CCNGG 2 cut(s) 147, 1150
BmsI GCATC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 18, 420
BpmI CTGGAG 1 cut(s) 1305
Bpu14I TTCGAA 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 876
BsaJI CCNNGG 2 cut(s) 618, 1149
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 1015, 1045
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 401, 486, 742, 743, 1311, 1315
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 4 cut(s) 684, 760, 792, 1303
Bse8I GATNNNNATC 1 cut(s) 876
BseBI CCWGG 1 cut(s) 1150
BseDI CCNNGG 2 cut(s) 618, 1149
BseGI GGATG 9 cut(s) 130, 211, 335, 385, 548, 628, 788, 1225, 1320
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 7 cut(s) 115, 401, 486, 742, 743, 1311, 1315
BseMII CTCAG 3 cut(s) 368, 550, 918
BseNI ACTGG 4 cut(s) 684, 760, 792, 1303
BseRI GAGGAG 1 cut(s) 524
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 1 cut(s) 1189
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 137, 908
BshNI GGYRCC 1 cut(s) 1301
BsiSI CCGG 3 cut(s) 53, 109, 147
BslFI GGGAC 1 cut(s) 1205
BslI CCNNNNNNNGG 7 cut(s) 115, 401, 486, 742, 743, 1311, 1315
BsmAI GTCTC 2 cut(s) 736, 973
BsmBI CGTCTC 1 cut(s) 736
BsmFI GGGAC 1 cut(s) 1205
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 2 cut(s) 137, 908
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 172, 226
Bsp143I GATC 2 cut(s) 775, 860
BspACI CCGC 3 cut(s) 5, 41, 131
BspANI GGCC 2 cut(s) 137, 908
BspCNI CTCAG 3 cut(s) 367, 549, 919
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 975
BspLI GGNNCC 2 cut(s) 1303, 1320
BspMAI CTGCAG 2 cut(s) 289, 1294
BspMI ACCTGC 3 cut(s) 46, 292, 298
BspPI GGATC 1 cut(s) 868
BspT104I TTCGAA 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 1301
BspTI CTTAAG 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 4 cut(s) 684, 760, 792, 1303
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 618, 1149
BssMI GATC 2 cut(s) 775, 860
BssT1I CCWWGG 1 cut(s) 618
Bst2UI CCWGG 1 cut(s) 1150
Bst4CI ACNGT 2 cut(s) 472, 1310
BstAFI CTTAAG 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 54, 373, 826, 1021
BstDEI CTNAG 5 cut(s) 354, 536, 668, 920, 927
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 9 cut(s) 130, 211, 335, 385, 548, 628, 788, 1225, 1320
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 1 cut(s) 933
BstKTI GATC 2 cut(s) 778, 863
BstMAI GTCTC 2 cut(s) 736, 973
BstMBI GATC 2 cut(s) 775, 860
BstMWI GCNNNNNNNGC 2 cut(s) 434, 930
BstNI CCWGG 1 cut(s) 1150
BstNSI RCATGY 3 cut(s) 260, 593, 1078
BstSCI CCNGG 2 cut(s) 145, 1148
BstSFI CTRYAG 2 cut(s) 285, 1290
BstSLI GKGCMC 1 cut(s) 226
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 1189
BstV2I GAAGAC 2 cut(s) 18, 420
BsuRI GGCC 2 cut(s) 137, 908
BtsCI GGATG 9 cut(s) 130, 211, 335, 385, 548, 628, 788, 1225, 1320
BtsIMutI CAGTG 7 cut(s) 362, 468, 544, 677, 753, 799, 924
BveI ACCTGC 3 cut(s) 46, 292, 298
Cac8I GCNNGC 4 cut(s) 54, 373, 826, 1021
CaiI CAGNNNCTG 3 cut(s) 76, 679, 1298
CciI TCATGA 1 cut(s) 975
CfoI GCGC 1 cut(s) 933
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 106, 136
Csp6I GTAC 3 cut(s) 885, 1078, 1265
CviQI GTAC 3 cut(s) 885, 1078, 1265
DdeI CTNAG 5 cut(s) 354, 536, 668, 920, 927
DpnI GATC 2 cut(s) 777, 862
DpnII GATC 2 cut(s) 775, 860
DrdI GACNNNNNNGTC 1 cut(s) 125
DriI GACNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 906
Eam1105I GACNNNNNGTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 1100, 1322
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 1148
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 2 cut(s) 243, 498
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 618
Esp3I CGTCTC 1 cut(s) 736
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 1205
FauI CCCGC 1 cut(s) 34
FauNDI CATATG 1 cut(s) 838
FbaI TGATCA 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 1203
FokI GGATG 9 cut(s) 137, 218, 322, 372, 535, 635, 775, 1232, 1327
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 1203
FspBI CTAG 3 cut(s) 192, 279, 1260
GlaI GCGC 1 cut(s) 932
GluI GCNGC 1 cut(s) 1203
GsuI CTGGAG 1 cut(s) 1305
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 2 cut(s) 137, 908
HapII CCGG 3 cut(s) 53, 109, 147
HhaI GCGC 1 cut(s) 933
Hin6I GCGC 1 cut(s) 931
HinP1I GCGC 1 cut(s) 931
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HinfI GANTC 4 cut(s) 22, 119, 382, 706
HpaII CCGG 3 cut(s) 53, 109, 147
HphI GGTGA 2 cut(s) 785, 881
Hpy166II GTNNAC 2 cut(s) 546, 957
Hpy188I TCNGA 4 cut(s) 124, 412, 562, 569
Hpy188III TCNNGA 7 cut(s) 339, 431, 581, 858, 899, 976, 1322
Hpy8I GTNNAC 2 cut(s) 546, 957
HpyAV CCTTC 1 cut(s) 757
HpyCH4III ACNGT 2 cut(s) 472, 1310
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 930
HpyF3I CTNAG 5 cut(s) 354, 536, 668, 920, 927
HspAI GCGC 1 cut(s) 931
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 775
Kzo9I GATC 2 cut(s) 775, 860
LmnI GCTCC 1 cut(s) 1324
Lsp1109I GCAGC 1 cut(s) 1189
LweI GCATC 1 cut(s) 483
MaeI CTAG 3 cut(s) 192, 279, 1260
MaeIII GTNAC 2 cut(s) 444, 1048
MalI GATC 2 cut(s) 777, 862
MboI GATC 2 cut(s) 775, 860
MboII GAAGA 8 cut(s) 23, 167, 309, 312, 359, 425, 809, 1328
MhlI GDGCHC 2 cut(s) 172, 226
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 8 cut(s) 99, 325, 501, 507, 816, 849, 1007, 1055
MluNI TGGCCA 1 cut(s) 908
MlyI GAGTC 3 cut(s) 31, 113, 391
MmeI TCCRAC 1 cut(s) 1292
MnlI CCTC 8 cut(s) 127, 194, 213, 545, 646, 942, 1041, 1318
Mox20I TGGCCA 1 cut(s) 908
Mph1103I ATGCAT 2 cut(s) 243, 498
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 908
MseI TTAA 4 cut(s) 114, 329, 912, 1360
MslI CAYNNNNRTG 2 cut(s) 758, 996
Msp20I TGGCCA 1 cut(s) 908
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 3 cut(s) 53, 109, 147
MspR9I CCNGG 2 cut(s) 147, 1150
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 1150
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 434, 930
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 147
NdeI CATATG 1 cut(s) 838
NdeII GATC 2 cut(s) 775, 860
NgoMIV GCCGGC 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 1303, 1320
NsiI ATGCAT 2 cut(s) 243, 498
NspI RCATGY 3 cut(s) 260, 593, 1078
NspV TTCGAA 1 cut(s) 153
PagI TCATGA 1 cut(s) 975
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 706
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 1 cut(s) 1204
PleI GAGTC 3 cut(s) 30, 113, 390
PpsI GAGTC 3 cut(s) 30, 113, 390
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 1148
PspGI CCWGG 1 cut(s) 1148
PspN4I GGNNCC 2 cut(s) 1303, 1320
PspPI GGNCC 2 cut(s) 106, 136
PstI CTGCAG 2 cut(s) 289, 1294
PstNI CAGNNNCTG 3 cut(s) 76, 679, 1298
RsaI GTAC 3 cut(s) 886, 1079, 1266
RsaNI GTAC 3 cut(s) 885, 1078, 1265
RseI CAYNNNNRTG 2 cut(s) 758, 996
SaqAI TTAA 4 cut(s) 114, 329, 912, 1360
SatI GCNGC 1 cut(s) 1203
Sau3AI GATC 2 cut(s) 775, 860
Sau96I GGNCC 2 cut(s) 106, 136
SchI GAGTC 3 cut(s) 31, 113, 391
ScrFI CCNGG 2 cut(s) 147, 1150
SduI GDGCHC 2 cut(s) 172, 226
SfaNI GCATC 1 cut(s) 483
SfcI CTRYAG 2 cut(s) 285, 1290
SfuI TTCGAA 1 cut(s) 153
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 758, 996
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 8 cut(s) 99, 325, 501, 507, 816, 849, 1007, 1055
SsiI CCGC 3 cut(s) 5, 41, 131
SspMI CTAG 3 cut(s) 192, 279, 1260
StyD4I CCNGG 2 cut(s) 145, 1148
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 472, 1310
TaqI TCGA 3 cut(s) 153, 291, 491
TasI AATT 8 cut(s) 99, 325, 501, 507, 816, 849, 1007, 1055
TatI WGTACW 1 cut(s) 1264
TfiI GAWTC 1 cut(s) 706
Tru1I TTAA 4 cut(s) 114, 329, 912, 1360
Tru9I TTAA 4 cut(s) 114, 329, 912, 1360
TscAI CASTG 7 cut(s) 362, 475, 544, 684, 760, 799, 931
TseI GCWGC 1 cut(s) 1202
TspDTI ATGAA 9 cut(s) 111, 174, 302, 513, 776, 855, 954, 1000, 1172
TspGWI ACGGA 2 cut(s) 32, 287
TspRI CASTG 7 cut(s) 362, 475, 544, 684, 760, 799, 931
Van91I CCANNNNNTGG 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 484
XapI RAATTY 2 cut(s) 99, 1055
XceI RCATGY 3 cut(s) 260, 593, 1078
XspI CTAG 3 cut(s) 192, 279, 1260
Zsp2I ATGCAT 2 cut(s) 243, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.