Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Forward (+)

16952197 .. 16952589

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0122600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAAAACAGGGAACTACTCTTTCCACGTTCGGTTCAACCTCAACTGCTCTCTTGGCACTTCTGATTATGGATTCTGTCTTCACCCTTGCAAAAGCTTCTCAACTCCCAACTGTCAAGATATTGGGTTCACCTTTTCACAGAAGACCTCCAAAGTTATGTTCATCTCTTATACAGACGGATCGCAATTTGATATCTATACTTCTGGAATCCAATTGGGTCCATCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

76

Amino Acids

8.5

Weight (kDa)

7.67

Isoelectric Point (pI)

12.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
AlwI	GGATC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	74, 121
AvaII	GGWCC	1 cut(s)	218
BbsI	GAAGAC	2 cut(s)	71, 149
BccI	CCATC	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	71, 149
BseGI	GGATG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	187
BssMI	GATC	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstV2I	GAAGAC	2 cut(s)	71, 149
BtsCI	GGATG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	218
CviJI	RGCY	1 cut(s)	96
CviKI_1	RGCY	1 cut(s)	96
DpnI	GATC	1 cut(s)	181
DpnII	GATC	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	193
FaiI	YATR	4 cut(s)	69, 158, 171, 198
FokI	GGATG	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	2 cut(s)	72, 207
HphI	GGTGA	2 cut(s)	74, 121
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	116, 204
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	179
LpnPI	CCDG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	27
MalI	GATC	1 cut(s)	181
MboI	GATC	1 cut(s)	179
MboII	GAAGA	2 cut(s)	71, 154
MfeI	CAATTG	1 cut(s)	212
MluCI	AATT	2 cut(s)	185, 212
MnlI	CCTC	2 cut(s)	50, 157
MunI	CAATTG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	72, 207
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	179
Sau96I	GGNCC	1 cut(s)	218
SetI	ASST	5 cut(s)	30, 42, 98, 134, 149
SgeI	CNNG	6 cut(s)	21, 38, 65, 99, 128, 216
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	2 cut(s)	185, 212
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	30
TasI	AATT	2 cut(s)	185, 212
TfiI	GAWTC	2 cut(s)	72, 207
TspDTI	ATGAA	2 cut(s)	17, 151
TspGWI	ACGGA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.