Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001013

Physical Location & Seq

Genomic Coordinates Forward (+)

28836344 .. 28845239

Gene Structure 8896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGGTCTTTCTGCAACGAGCTTATCCAAAGCTGTGGGCGCGCCGCGCGCCAGAATATGCCACTTCTGTTTCTGCTTTTGGGTATGCGTTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTTATGCATAAAAGGTTGCTGCATTTGGCTCATGATCCTGCTCAAAGACCAGCCATCGAAATCCGGCTCGTACAGGTTCATCCAACTTCAAATGGGAATTCAGCTGATTCTGTCAATTCAGATTCCCCGGGTAGAGATGCTGCCCAAAGTTCAAAGTTATCTAGCAGACAAAGTATACATCCACCTCCGGCATTTGGCTCATCGCCCAACCTTGAAGCCCTTGCACTTGAATCAAATAAATCTCATGATCAAGATGATGAACATTCTGTACATGCCAACACACAGTTGAGTCGGCCCATGCATGAAATCACTTTCTCAACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTGCAGAGCTTGGGCTGAATATCCAAGAAGCACATGCATTTTCCACGCTGGATGGTTACTCCTTGGATGTCTTTGTTGTTGACGGCTGGCCTTACGAGGAAACGGAGCAGCTCAAGACTGCTTTGGAAAAGGAAGTTTTGAAGATTGAGGGACCATGGCCAATACATCGATCATCATCTTCTGGTAGTGAACATGATCAAGTAGTGATCAAATCTGAACCTAATCAACTGATTATACCCAATGATGGGACTGATGTATGGGAAATTGATCCTAGACAGTTGAAATTTGGAAACAAAGTTGCATCTGGGTCCTGTGGTGATCTATACAAAGGTACTTACTGTAGTCAAGAAGTGGCGATTAAAGTCCTCAAACCTGAATGCGTAAATTCAGACATGCAAAAAGATTTTGCCCAGGAAGTCTTTATTATGAGGAAAGTTCGACATAAGAATGTTGTACAATTCATTGGTGCATGTACCAAGCTCCCAAGCCTGTGTATTGTAACAGAATATATGTCTGGTGGAAGTGTGTATGACTACTTACATAAACAAAAGGGTGTTTTTAAGCTCCCATCCTTGCTCAAGGTAGCAATTGATGTTGCCAAGGGAATGACCTACTTGCACCAGAATAACATAATCCACAGGGATTTAAAAGCTGCCAATCTCTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTTGGGGTTGCCAGGGTCAAGTCTCAATCAGGAGTAATGACAGCAGAAACTGGGACATATAGGTGGATGGCTCCAGAGCTTCCATATGAATACTTGACCCCACTACAAGCTGCTGTTGGAGTGGTCCAAAAGGGCTTACGGCCAACCATTCCAAAGCAAACTCATCCAAATCTTACCGAGTTACTTGAGAAATGCTGGCAACAAGATCCAGCATTAAGACCCGACTTCTCAGAAATCATAGAGATGCTGCAGCCATTAGCCAAGGAGATTGGTGATGGAGGAGAAGAACGACGCAAGTCATCTGGAGGATTTCTGTCCGTCCTTAGACGAGCAACATTAGTTGAGTACTCTAGCACAGAAACGAACATTGACTTGAAGCAAAAGCCATCAAGTGCAAGGAATGAGTTGCAGCATGCAGGACCTACTATTCTGATATTCCGAGTGGCAGTGGCATCAGAACCTCTAGTACTTGGACAACTGGGACTACTAGCCAGTGTAGTCAAGCGAAGACCAAGAGCCTGCTACGTCCACCATGTCGCATCGACACCGGTACCAGTCTGGCCCGATATGAAGTATGGGGGTTGCTACCGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko01521 ko01522 ko04010 ko04012 ko04013 ko04015 ko04024 ko04062 ko04068 ko04150 ko04214 ko04270 ko04320 ko04510 ko04650 ko04720 ko04722 ko04726 ko04730 ko04810 ko04910 ko04914 ko04934 ko05034 ko05160 ko05200 ko05205 ko05210 ko05211 ko05212 ko05213 ko05214 ko05215 ko05216 ko05218 ko05219 ko05220 ko05221 ko05223 ko05224 ko05225 ko05226 map01521 map01522 map04010 map04012 map04013 map04015 map04024 map04062 map04068 map04150 map04214 map04270 map04320 map04510 map04650 map04720 map04722 map04726 map04730 map04810 map04910 map04914 map04934 map05034 map05160 map05200 map05205 map05210 map05211 map05212 map05213 map05214 map05215 map05216 map05218 map05219 map05220 map05221 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

ACT Pkinase_Tyr

Protein Analysis

591

Amino Acids

65.61

Weight (kDa)

6.48

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ACT	PF01842	142 - 189	1e-06	ACT domain
PK_Tyr_Ser-Thr	PF07714	254 - 420	1.9e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	257 - 420	2.1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	421 - 476	2e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38470 AT4G38470 AT4G38470
fragaria_vesca	FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g15800 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880 FvH4_2g37880
malus_domestica	MD05G1126800.v1.1 MD10G1130000.v1.1 MD10G1130300.v1.1 MD15G1006000.v1.1
prunus_persica	Prupe.1G358800_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1 Prupe.8G170600_v2.0.a1
pyrus_communis	pycom05g12270 pycom15g00460
rosa_chinensis	RchiOBHm_Chr6g0279141 RchiOBHm_Chr6g0303741
rosa_laevigata	RLG00000011050 RLG00000013163
rosa_multiflora	Rmu_co8370501.1_g000001 Rmu_sc0006400.1_g000001 Rmu_sc0009053.1_g000001 Rmu_sc0012878.1_g000007 Rmu_sc0014203.1_g000019
rosa_roxburghii	Rroxscaffold_7G00164440 Rroxscaffold_7G00189090
rosa_rugosa	Rorug06G0122600 Rorug06G0122700 Rorug06G0122800 Rorug06G0122900 Rorug06G0324400
rosa_samantha	Rh6AG231400 Rh6AG438700 Rh6BG236300 Rh6BG464400 Rh6CG238400 Rh6CG451000 Rh6DG229900 Rh6DG437800
rosa_wichuraiana	Rw6G020260 Rw6G037980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1729
AccB1I	GGYRCC	1 cut(s)	1729
AccI	GTMKAC	1 cut(s)	295
AccII	CGCG	3 cut(s)	40, 45, 47
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	149, 743, 1379
AcoI	YGGCCR	2 cut(s)	638, 1319
AcsI	RAATTY	3 cut(s)	217, 764, 865
AfaI	GTAC	8 cut(s)	192, 390, 814, 936, 955, 1526, 1647, 1731
AfiI	CCNNNNNNNGG	3 cut(s)	314, 725, 726
AgeI	ACCGGT	1 cut(s)	1726
AgsI	TTSAA	7 cut(s)	210, 273, 335, 350, 622, 763, 1555
AjnI	CCWGG	2 cut(s)	891, 1190
Alw26I	GTCTC	1 cut(s)	1206
AlwI	GGATC	3 cut(s)	149, 743, 1379
AlwNI	CAGNNNCTG	1 cut(s)	1229
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	5 cut(s)	413, 569, 638, 1319, 1739
ApeKI	GCWGC	8 cut(s)	139, 260, 589, 1133, 1289, 1426, 1429, 1588
ApoI	RAATTY	3 cut(s)	217, 764, 865
AscI	GGCGCGCC	1 cut(s)	38
AsiGI	ACCGGT	1 cut(s)	1726
Asp700I	GAANNNNTTC	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	1729
AspLEI	GCGC	4 cut(s)	40, 42, 47, 49
AspS9I	GGNCC	6 cut(s)	414, 632, 789, 1303, 1598, 1740
AsuC2I	CCSGG	2 cut(s)	248, 249
AsuHPI	GGTGA	2 cut(s)	809, 1463
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	4 cut(s)	632, 789, 1303, 1598
BaeI	ACNNNNGTAYC	2 cut(s)	1713, 1746
BalI	TGGCCA	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	1729
BbsI	GAAGAC	1 cut(s)	1693
BbvI	GCAGC	8 cut(s)	126, 247, 601, 1120, 1276, 1413, 1441, 1600
BccI	CCATC	8 cut(s)	182, 527, 719, 1057, 1141, 1240, 1448, 1573
BceAI	ACGGC	2 cut(s)	580, 1334
BciT130I	CCWGG	2 cut(s)	893, 1192
BclI	TGATCA	3 cut(s)	367, 676, 687
BcnI	CCSGG	2 cut(s)	248, 249
BcoDI	GTCTC	1 cut(s)	1206
BfaI	CTAG	5 cut(s)	282, 753, 1530, 1643, 1667
BfmI	CTRYAG	2 cut(s)	820, 1427
BisI	GCNGC	9 cut(s)	43, 140, 261, 590, 1134, 1290, 1427, 1430, 1589
BlsI	GCNGC	9 cut(s)	44, 141, 262, 591, 1135, 1291, 1428, 1431, 1590
BmcAI	AGTACT	2 cut(s)	1526, 1647
Bme1390I	CCNGG	4 cut(s)	248, 249, 893, 1192
Bme18I	GGWCC	4 cut(s)	632, 789, 1303, 1598
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	6 cut(s)	414, 632, 789, 1303, 1598, 1740
BmiI	GGNNCC	4 cut(s)	633, 790, 1251, 1731
BmrFI	CCNGG	4 cut(s)	248, 249, 893, 1192
BmrI	ACTGGG	2 cut(s)	1239, 1667
BmsI	GCATC	5 cut(s)	247, 791, 1413, 1640, 1727
BmuI	ACTGGG	2 cut(s)	1239, 1667
BoxI	GACNNNNGTC	1 cut(s)	1474
BpiI	GAAGAC	1 cut(s)	1693
BpmI	CTGGAG	2 cut(s)	1236, 1503
BpuEI	CTTGAG	3 cut(s)	578, 1043, 1385
BpuMI	CCSGG	2 cut(s)	248, 249
Bsa29I	ATCGAT	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	655
BsaJI	CCNNGG	8 cut(s)	246, 247, 543, 635, 891, 1080, 1191, 1440
BsaWI	WCCGGW	1 cut(s)	1726
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 725, 726
Bse118I	RCCGGY	1 cut(s)	1726
Bse1I	ACTGG	4 cut(s)	1234, 1662, 1671, 1733
Bse8I	GATNNNNATC	1 cut(s)	655
BseBI	CCWGG	2 cut(s)	893, 1192
BseCI	ATCGAT	1 cut(s)	649
BseDI	CCNNGG	8 cut(s)	246, 247, 543, 635, 891, 1080, 1191, 1440
BseGI	GGATG	9 cut(s)	97, 199, 298, 538, 553, 1049, 1156, 1251, 1342
BseJI	GATNNNNATC	1 cut(s)	655
BseLI	CCNNNNNNNGG	3 cut(s)	314, 725, 726
BseMII	CTCAG	2 cut(s)	475, 1422
BseNI	ACTGG	4 cut(s)	1234, 1662, 1671, 1733
BsePI	GCGCGC	2 cut(s)	38, 45
BseRI	GAGGAG	1 cut(s)	1473
BseXI	GCAGC	8 cut(s)	126, 247, 601, 1120, 1276, 1413, 1441, 1600
Bsh1236I	CGCG	3 cut(s)	40, 45, 47
BshFI	GGCC	5 cut(s)	415, 571, 640, 1321, 1741
BshNI	GGYRCC	1 cut(s)	1729
BshTI	ACCGGT	1 cut(s)	1726
BshVI	ATCGAT	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	4 cut(s)	184, 248, 308, 1727
BslFI	GGGAC	4 cut(s)	645, 742, 1246, 1674
BslI	CCNNNNNNNGG	3 cut(s)	314, 725, 726
BsmAI	GTCTC	1 cut(s)	1206
BsmFI	GGGAC	4 cut(s)	645, 742, 1246, 1674
BsmI	GAATGC	1 cut(s)	863
BsnI	GGCC	5 cut(s)	415, 571, 640, 1321, 1741
BsoBI	CYCGRG	1 cut(s)	247
Bsp1407I	TGTACA	2 cut(s)	388, 934
Bsp143I	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
Bsp19I	CCATGG	1 cut(s)	635
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	5 cut(s)	415, 571, 640, 1321, 1741
BspCNI	CTCAG	2 cut(s)	474, 1421
BspDI	ATCGAT	1 cut(s)	649
BspFNI	CGCG	3 cut(s)	40, 45, 47
BspHI	TCATGA	2 cut(s)	151, 364
BspLI	GGNNCC	4 cut(s)	633, 790, 1251, 1731
BspMAI	CTGCAG	1 cut(s)	1431
BspPI	GGATC	3 cut(s)	149, 743, 1379
BspT107I	GGYRCC	1 cut(s)	1729
BsrFI	RCCGGY	1 cut(s)	1726
BsrGI	TGTACA	2 cut(s)	388, 934
BsrI	ACTGG	4 cut(s)	1234, 1662, 1671, 1733
BssAI	RCCGGY	1 cut(s)	1726
BssECI	CCNNGG	8 cut(s)	246, 247, 543, 635, 891, 1080, 1191, 1440
BssHII	GCGCGC	2 cut(s)	38, 45
BssMI	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
BssNAI	GTATAC	1 cut(s)	296
BssT1I	CCWWGG	4 cut(s)	543, 635, 1080, 1440
Bst1107I	GTATAC	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	893, 1192
Bst4CI	ACNGT	4 cut(s)	405, 759, 821, 1769
BstAUI	TGTACA	2 cut(s)	388, 934
BstC8I	GCNNGC	7 cut(s)	40, 47, 483, 569, 1376, 1593, 1699
BstDEI	CTNAG	3 cut(s)	461, 1408, 1502
BstDSI	CCRYGG	1 cut(s)	635
BstF5I	GGATG	9 cut(s)	97, 199, 298, 538, 553, 1049, 1156, 1251, 1342
BstFNI	CGCG	3 cut(s)	40, 45, 47
BstHHI	GCGC	4 cut(s)	40, 42, 47, 49
BstKTI	GATC	8 cut(s)	157, 370, 653, 679, 690, 751, 802, 1387
BstMAI	GTCTC	1 cut(s)	1206
BstMBI	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 44, 46, 487
BstNI	CCWGG	2 cut(s)	893, 1192
BstNSI	RCATGY	5 cut(s)	395, 518, 877, 954, 1595
BstPAI	GACNNNNGTC	1 cut(s)	1474
BstSCI	CCNGG	4 cut(s)	246, 247, 891, 1190
BstSFI	CTRYAG	2 cut(s)	820, 1427
BstUI	CGCG	3 cut(s)	40, 45, 47
BstV1I	GCAGC	8 cut(s)	126, 247, 601, 1120, 1276, 1413, 1441, 1600
BstV2I	GAAGAC	1 cut(s)	1693
BstX2I	RGATCY	1 cut(s)	1384
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	1384
BstZ17I	GTATAC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	649
BsuRI	GGCC	5 cut(s)	415, 571, 640, 1321, 1741
BsuTUI	ATCGAT	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	635
BtgZI	GCGATG	1 cut(s)	306
BtsCI	GGATG	9 cut(s)	97, 199, 298, 538, 553, 1049, 1156, 1251, 1342
BtsI	GCAGTG	1 cut(s)	1632
BtsIMutI	CAGTG	2 cut(s)	1632, 1678
Cac8I	GCNNGC	7 cut(s)	40, 47, 483, 569, 1376, 1593, 1699
CaiI	CAGNNNCTG	1 cut(s)	1229
CciI	TCATGA	2 cut(s)	151, 364
CfoI	GCGC	4 cut(s)	40, 42, 47, 49
Cfr10I	RCCGGY	1 cut(s)	1726
Cfr13I	GGNCC	6 cut(s)	414, 632, 789, 1303, 1598, 1740
Cfr9I	CCCGGG	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	649
CseI	GACGC	1 cut(s)	1479
Csp6I	GTAC	8 cut(s)	191, 389, 813, 935, 954, 1525, 1646, 1730
CspAI	ACCGGT	1 cut(s)	1726
CviQI	GTAC	8 cut(s)	191, 389, 813, 935, 954, 1525, 1646, 1730
DdeI	CTNAG	3 cut(s)	461, 1408, 1502
DpnI	GATC	8 cut(s)	156, 369, 652, 678, 689, 750, 801, 1386
DpnII	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
DraI	TTTAAA	1 cut(s)	1128
EaeI	YGGCCR	2 cut(s)	638, 1319
Eco130I	CCWWGG	4 cut(s)	543, 635, 1080, 1440
Eco47I	GGWCC	4 cut(s)	632, 789, 1303, 1598
Eco88I	CYCGRG	1 cut(s)	247
EcoO109I	RGGNCCY	2 cut(s)	789, 1598
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	891, 1190
EcoT14I	CCWWGG	4 cut(s)	543, 635, 1080, 1440
EcoT22I	ATGCAT	3 cut(s)	129, 423, 520
ErhI	CCWWGG	4 cut(s)	543, 635, 1080, 1440
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	4 cut(s)	645, 742, 1246, 1674
FauNDI	CATATG	1 cut(s)	1264
FbaI	TGATCA	3 cut(s)	367, 676, 687
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	9 cut(s)	43, 140, 261, 590, 1134, 1290, 1427, 1430, 1589
FokI	GGATG	9 cut(s)	104, 186, 285, 545, 560, 1036, 1163, 1258, 1329
Fsp4HI	GCNGC	9 cut(s)	43, 140, 261, 590, 1134, 1290, 1427, 1430, 1589
FspBI	CTAG	5 cut(s)	282, 753, 1530, 1643, 1667
GlaI	GCGC	4 cut(s)	39, 41, 46, 48
GluI	GCNGC	9 cut(s)	43, 140, 261, 590, 1134, 1290, 1427, 1430, 1589
GsuI	CTGGAG	2 cut(s)	1236, 1503
HaeIII	GGCC	5 cut(s)	415, 571, 640, 1321, 1741
HapII	CCGG	4 cut(s)	184, 248, 308, 1727
HgaI	GACGC	1 cut(s)	1479
HhaI	GCGC	4 cut(s)	40, 42, 47, 49
Hin6I	GCGC	4 cut(s)	38, 40, 45, 47
HinP1I	GCGC	4 cut(s)	38, 40, 45, 47
HincII	GTYRAC	2 cut(s)	471, 562
HindII	GTYRAC	2 cut(s)	471, 562
HinfI	GANTC	4 cut(s)	227, 242, 350, 409
HpaII	CCGG	4 cut(s)	184, 248, 308, 1727
HphI	GGTGA	2 cut(s)	809, 1463
Hpy166II	GTNNAC	5 cut(s)	296, 471, 562, 671, 1708
Hpy188I	TCNGA	7 cut(s)	241, 697, 871, 1411, 1611, 1619, 1636
Hpy188III	TCNNGA	9 cut(s)	152, 365, 371, 595, 827, 1144, 1209, 1253, 1482
Hpy8I	GTNNAC	5 cut(s)	296, 471, 562, 671, 1708
Hpy99I	CGWCG	1 cut(s)	1473
HpyCH4III	ACNGT	4 cut(s)	405, 759, 821, 1769
HpyCH4IV	ACGT	1 cut(s)	1704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 44, 46, 487
HpyF3I	CTNAG	3 cut(s)	461, 1408, 1502
HpySE526I	ACGT	1 cut(s)	1704
HspAI	GCGC	4 cut(s)	38, 40, 45, 47
KpnI	GGTACC	1 cut(s)	1733
Ksp22I	TGATCA	3 cut(s)	367, 676, 687
Kzo9I	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
LmnI	GCTCC	4 cut(s)	586, 966, 1050, 1255
Lsp1109I	GCAGC	8 cut(s)	126, 247, 601, 1120, 1276, 1413, 1441, 1600
LweI	GCATC	5 cut(s)	247, 791, 1413, 1640, 1727
MaeI	CTAG	5 cut(s)	282, 753, 1530, 1643, 1667
MaeII	ACGT	1 cut(s)	1704
MaeIII	GTNAC	3 cut(s)	536, 979, 1359
MalI	GATC	8 cut(s)	156, 369, 652, 678, 689, 750, 801, 1386
MboI	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
MboII	GAAGA	5 cut(s)	125, 634, 651, 1475, 1698
MfeI	CAATTG	1 cut(s)	1068
MflI	RGATCY	1 cut(s)	1384
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	7 cut(s)	217, 235, 744, 764, 865, 938, 1068
MluNI	TGGCCA	1 cut(s)	640
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	3 cut(s)	69, 227, 1276
MnlI	CCTC	9 cut(s)	99, 315, 571, 622, 857, 903, 1451, 1478, 1650
Mox20I	TGGCCA	1 cut(s)	640
Mph1103I	ATGCAT	3 cut(s)	129, 423, 520
MroXI	GAANNNNTTC	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	640
MseI	TTAA	4 cut(s)	840, 1041, 1127, 1394
MslI	CAYNNNNRTG	3 cut(s)	927, 1240, 1421
Msp20I	TGGCCA	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	4 cut(s)	184, 248, 308, 1727
MspR9I	CCNGG	4 cut(s)	248, 249, 893, 1192
MteI	GCGCNGCGC	1 cut(s)	43
MunI	CAATTG	1 cut(s)	1068
Mva1269I	GAATGC	1 cut(s)	863
MvaI	CCWGG	2 cut(s)	893, 1192
MvnI	CGCG	3 cut(s)	40, 45, 47
MwoI	GCNNNNNNNGC	4 cut(s)	37, 44, 46, 487
NciI	CCSGG	2 cut(s)	248, 249
NcoI	CCATGG	1 cut(s)	635
NdeI	CATATG	1 cut(s)	1264
NdeII	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
NlaIV	GGNNCC	4 cut(s)	633, 790, 1251, 1731
NsiI	ATGCAT	3 cut(s)	129, 423, 520
NspI	RCATGY	5 cut(s)	395, 518, 877, 954, 1595
PaeI	GCATGC	1 cut(s)	1595
PagI	TCATGA	2 cut(s)	151, 364
PalAI	GGCGCGCC	1 cut(s)	38
PauI	GCGCGC	2 cut(s)	38, 45
PctI	GAATGC	1 cut(s)	863
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	227, 242, 350
PinAI	ACCGGT	1 cut(s)	1726
PkrI	GCNGC	9 cut(s)	44, 141, 262, 591, 1135, 1291, 1428, 1431, 1590
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PpuMI	RGGWCCY	2 cut(s)	789, 1598
PshAI	GACNNNNGTC	1 cut(s)	1474
Psp5II	RGGWCCY	2 cut(s)	789, 1598
Psp6I	CCWGG	2 cut(s)	891, 1190
PspGI	CCWGG	2 cut(s)	891, 1190
PspN4I	GGNNCC	4 cut(s)	633, 790, 1251, 1731
PspPI	GGNCC	6 cut(s)	414, 632, 789, 1303, 1598, 1740
PspPPI	RGGWCCY	2 cut(s)	789, 1598
PsrI	GAACNNNNNNTAC	4 cut(s)	372, 404, 1629, 1661
PstI	CTGCAG	1 cut(s)	1431
PstNI	CAGNNNCTG	1 cut(s)	1229
PsuI	RGATCY	1 cut(s)	1384
PteI	GCGCGC	2 cut(s)	38, 45
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	8 cut(s)	192, 390, 814, 936, 955, 1526, 1647, 1731
RsaNI	GTAC	8 cut(s)	191, 389, 813, 935, 954, 1525, 1646, 1730
RseI	CAYNNNNRTG	3 cut(s)	927, 1240, 1421
SaqAI	TTAA	4 cut(s)	840, 1041, 1127, 1394
SatI	GCNGC	9 cut(s)	43, 140, 261, 590, 1134, 1290, 1427, 1430, 1589
Sau3AI	GATC	8 cut(s)	154, 367, 650, 676, 687, 748, 799, 1384
Sau96I	GGNCC	6 cut(s)	414, 632, 789, 1303, 1598, 1740
ScaI	AGTACT	2 cut(s)	1526, 1647
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	4 cut(s)	248, 249, 893, 1192
SfaNI	GCATC	5 cut(s)	247, 791, 1413, 1640, 1727
SfcI	CTRYAG	2 cut(s)	820, 1427
SgsI	GGCGCGCC	1 cut(s)	38
SinI	GGWCC	4 cut(s)	632, 789, 1303, 1598
SmaI	CCCGGG	1 cut(s)	249
SmiMI	CAYNNNNRTG	3 cut(s)	927, 1240, 1421
SmlI	CTYRAG	3 cut(s)	593, 1058, 1364
SmoI	CTYRAG	3 cut(s)	593, 1058, 1364
SphI	GCATGC	1 cut(s)	1595
Sse9I	AATT	7 cut(s)	217, 235, 744, 764, 865, 938, 1068
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	5 cut(s)	282, 753, 1530, 1643, 1667
StyD4I	CCNGG	4 cut(s)	246, 247, 891, 1190
StyI	CCWWGG	4 cut(s)	543, 635, 1080, 1440
TaaI	ACNGT	4 cut(s)	405, 759, 821, 1769
TaiI	ACGT	1 cut(s)	1707
TaqI	TCGA	4 cut(s)	177, 649, 919, 1721
TasI	AATT	7 cut(s)	217, 235, 744, 764, 865, 938, 1068
TatI	WGTACW	4 cut(s)	388, 934, 1524, 1645
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	3 cut(s)	227, 242, 350
Tru1I	TTAA	4 cut(s)	840, 1041, 1127, 1394
Tru9I	TTAA	4 cut(s)	840, 1041, 1127, 1394
TscAI	CASTG	2 cut(s)	1632, 1678
TseI	GCWGC	8 cut(s)	139, 260, 589, 1133, 1289, 1426, 1429, 1588
TspDTI	ATGAA	8 cut(s)	188, 393, 438, 931, 1167, 1173, 1281, 1763
TspGWI	ACGGA	2 cut(s)	599, 1486
TspMI	CCCGGG	1 cut(s)	247
TspRI	CASTG	2 cut(s)	1632, 1678
VpaK11BI	GGWCC	4 cut(s)	632, 789, 1303, 1598
XapI	RAATTY	3 cut(s)	217, 764, 865
XceI	RCATGY	5 cut(s)	395, 518, 877, 954, 1595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1144
XmaI	CCCGGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	5 cut(s)	282, 753, 1530, 1643, 1667
ZrmI	AGTACT	2 cut(s)	1526, 1647
Zsp2I	ATGCAT	3 cut(s)	129, 423, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.